data_TSA
#
_chem_comp.id TSA
_chem_comp.name "8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces BAR
_chem_comp.formula_weight 228.199
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TSA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ECM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TSA C1 C1 C 0 1 N N S N N N 27.499 17.712 49.922 0.083 0.140 -1.107 C1 TSA 1
TSA C2 C2 C 0 1 N N N N N N 27.291 18.473 51.273 -0.327 -1.087 -0.332 C2 TSA 2
TSA C3 C3 C 0 1 N N N N N N 26.516 18.006 52.302 0.058 -1.311 0.882 C3 TSA 3
TSA C4 C4 C 0 1 N N R N N N 25.668 16.741 52.215 0.973 -0.423 1.669 C4 TSA 4
TSA O5 O5 O 0 1 N N N N N N 24.332 17.134 52.236 2.218 -1.094 1.867 O5 TSA 5
TSA C5 C5 C 0 1 N N R N N N 25.887 16.000 50.885 1.228 0.894 0.952 C5 TSA 6
TSA C6 C6 C 0 1 N N N N N N 26.161 16.967 49.675 1.421 0.645 -0.541 C6 TSA 7
TSA O7 O7 O 0 1 N N N N N N 26.983 15.121 50.989 0.210 1.841 1.203 O7 TSA 8
TSA C8 C8 C 0 1 N N S N N N 28.366 15.517 50.926 -1.036 1.359 0.718 C8 TSA 9
TSA C9 C9 C 0 1 N N N N N N 28.645 16.655 49.896 -0.966 1.230 -0.808 C9 TSA 10
TSA C10 C10 C 0 1 N N N N N N 27.907 18.692 48.796 0.189 -0.153 -2.581 C10 TSA 11
TSA O1 O1 O 0 1 N N N N N N 27.378 18.557 47.682 1.242 0.001 -3.153 O1 TSA 12
TSA O2 O2 O 0 1 N N N N N N 28.806 19.528 49.004 -0.885 -0.588 -3.258 O2 TSA 13
TSA C11 C11 C 0 1 N N N N N N 28.945 15.838 52.336 -1.339 0.027 1.355 C11 TSA 14
TSA O3 O3 O 0 1 N N N N N N 29.998 16.499 52.405 -0.975 -0.198 2.484 O3 TSA 15
TSA O4 O4 O 0 1 N N N N N N 28.322 15.475 53.352 -2.015 -0.906 0.667 O4 TSA 16
TSA H2 H2 H 0 1 N N N N N N 27.740 19.447 51.528 -0.971 -1.810 -0.811 H2 TSA 17
TSA H3 H3 H 0 1 N N N N N N 26.574 18.646 53.198 -0.305 -2.206 1.364 H3 TSA 18
TSA H4 H4 H 0 1 N N N N N N 25.946 16.069 53.060 0.521 -0.218 2.639 H4 TSA 19
TSA HO5 HO5 H 0 1 N N N N N N 23.803 16.346 52.181 2.021 -1.916 2.338 HO5 TSA 20
TSA H5 H5 H 0 1 N N N N N N 24.939 15.447 50.686 2.161 1.302 1.340 H5 TSA 21
TSA H61 1H6 H 0 1 N N N N N N 25.312 17.666 49.488 2.194 -0.107 -0.693 H61 TSA 22
TSA H62 2H6 H 0 1 N N N N N N 26.143 16.437 48.694 1.706 1.573 -1.037 H62 TSA 23
TSA H8 H8 H 0 1 N N N N N N 28.917 14.628 50.537 -1.823 2.069 0.972 H8 TSA 24
TSA H91 1H9 H 0 1 N N N N N N 28.813 16.252 48.870 -0.691 2.189 -1.248 H91 TSA 25
TSA H92 2H9 H 0 1 N N N N N N 29.643 17.123 50.057 -1.931 0.905 -1.197 H92 TSA 26
TSA HO2 HO2 H 0 1 N N N N N N 29.056 20.129 48.312 -0.816 -0.777 -4.204 HO2 TSA 27
TSA HO4 HO4 H 0 1 N N N N N N 28.675 15.670 54.211 -2.209 -1.761 1.076 HO4 TSA 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TSA C1 C2 SING N N 1
TSA C1 C6 SING N N 2
TSA C1 C9 SING N N 3
TSA C1 C10 SING N N 4
TSA C2 C3 DOUB N N 5
TSA C2 H2 SING N N 6
TSA C3 C4 SING N N 7
TSA C3 H3 SING N N 8
TSA C4 O5 SING N N 9
TSA C4 C5 SING N N 10
TSA C4 H4 SING N N 11
TSA O5 HO5 SING N N 12
TSA C5 C6 SING N N 13
TSA C5 O7 SING N N 14
TSA C5 H5 SING N N 15
TSA C6 H61 SING N N 16
TSA C6 H62 SING N N 17
TSA O7 C8 SING N N 18
TSA C8 C9 SING N N 19
TSA C8 C11 SING N N 20
TSA C8 H8 SING N N 21
TSA C9 H91 SING N N 22
TSA C9 H92 SING N N 23
TSA C10 O1 DOUB N N 24
TSA C10 O2 SING N N 25
TSA O2 HO2 SING N N 26
TSA C11 O3 DOUB N N 27
TSA C11 O4 SING N N 28
TSA O4 HO4 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TSA SMILES ACDLabs 10.04 O=C(O)C1OC2C(O)C=CC(C(=O)O)(C1)C2
TSA SMILES_CANONICAL CACTVS 3.341 O[C@@H]1C=C[C@@]2(C[C@H]1O[C@@H](C2)C(O)=O)C(O)=O
TSA SMILES CACTVS 3.341 O[CH]1C=C[C]2(C[CH]1O[CH](C2)C(O)=O)C(O)=O
TSA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1[C@@H]2[C@@H](C=C[C@]1(C[C@H](O2)C(=O)O)C(=O)O)O
TSA SMILES "OpenEye OEToolkits" 1.5.0 C1C2C(C=CC1(CC(O2)C(=O)O)C(=O)O)O
TSA InChI InChI 1.03 InChI=1S/C10H12O6/c11-5-1-2-10(9(14)15)3-6(5)16-7(4-10)8(12)13/h1-2,5-7,11H,3-4H2,(H,12,13)(H,14,15)/t5-,6-,7+,10+/m1/s1
TSA InChIKey InChI 1.03 KRZHNRULRHECRF-JQCUSGDOSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TSA "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,3S,5S,8R)-8-hydroxy-2-oxabicyclo[3.3.1]non-6-ene-3,5-dicarboxylic acid"
TSA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S,3S,5R,6R)-6-hydroxy-4-oxabicyclo[3.3.1]non-7-ene-1,3-dicarboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TSA 'Create component' 1999-07-08 EBI
TSA 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id TSA
_pdbe_chem_comp_drugbank_details.drugbank_id DB08648
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '8-Hydroxy-2-oxa-bicyclo[3.3.1]non-6-ene-3,5-dicarboxylic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id TSA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08648
_pdbe_chem_comp_drugbank_classification.parent Pyrans
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Pyrans
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrans. These are compounds containing a pyran ring, which is a six-member heterocyclic, non-aromatic ring with five carbon atoms, one oxygen atom and  two ring double bonds.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
TSA DB08648 P-protein 'Escherichia coli (strain K12)' P0A9J8 unknown 1
TSA DB08648 'Chorismate mutase AroH' 'Bacillus subtilis (strain 168)' P19080 unknown 2
TSA DB08648 'Secreted chorismate mutase' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WIB9 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TSA C1 C 1.031 0.378 1
TSA C2 C 2.329 -0.374 2
TSA C3 C 2.328 -1.874 3
TSA C4 C 1.028 -2.622 4
TSA O5 O 1.027 -4.122 5
TSA C5 C -0.270 -1.871 6
TSA C6 C -0.269 -0.371 7
TSA O7 O -1.569 -1.120 8
TSA C8 C -1.567 0.380 9
TSA C9 C -0.268 1.129 10
TSA C10 C 1.782 1.676 11
TSA O1 O 1.033 2.976 12
TSA O2 O 3.282 1.675 13
TSA C11 C -2.866 1.131 14
TSA O3 O -2.865 2.631 15
TSA O4 O -4.165 0.382 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TSA C1 C2 SINGLE NONE 1
TSA C1 C6 SINGLE NONE 2
TSA C1 C9 SINGLE NONE 3
TSA C1 C10 SINGLE BEGINWEDGE 4
TSA C2 C3 DOUBLE NONE 5
TSA C3 C4 SINGLE NONE 6
TSA C4 O5 SINGLE BEGINWEDGE 7
TSA C4 C5 SINGLE NONE 8
TSA C5 C6 SINGLE NONE 9
TSA C5 O7 SINGLE NONE 10
TSA O7 C8 SINGLE NONE 11
TSA C8 C9 SINGLE NONE 12
TSA C8 C11 SINGLE BEGINDASH 13
TSA C10 O1 DOUBLE NONE 14
TSA C10 O2 SINGLE NONE 15
TSA C11 O3 DOUBLE NONE 16
TSA C11 O4 SINGLE NONE 17
#
_pdbe_chem_comp_substructure.comp_id TSA
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles 'C1=CC2CCO[C@@H](C1)C2'
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C8H12O/c1-2-7-4-5-9-8(3-1)6-7/h1-2,7-8H,3-6H2/t7?,8-/m0/s1
_pdbe_chem_comp_substructure.substructure_inchikeys OVBUYJIYZWGLGW-MQWKRIRWSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TSA C1 S1 1
TSA C2 S1 1
TSA C3 S1 1
TSA C4 S1 1
TSA C5 S1 1
TSA C6 S1 1
TSA O7 S1 1
TSA C8 S1 1
TSA C9 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TSA
_pdbe_chem_comp_rdkit_properties.exactmw 228.063
_pdbe_chem_comp_rdkit_properties.amw 228.200
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 108.261
_pdbe_chem_comp_rdkit_properties.tpsa 104.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.380
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.746
_pdbe_chem_comp_rdkit_properties.chi0v 7.449
_pdbe_chem_comp_rdkit_properties.chi1v 3.929
_pdbe_chem_comp_rdkit_properties.chi2v 1.868
_pdbe_chem_comp_rdkit_properties.chi3v 1.868
_pdbe_chem_comp_rdkit_properties.chi4v 1.144
_pdbe_chem_comp_rdkit_properties.chi0n 19.449
_pdbe_chem_comp_rdkit_properties.chi1n 9.654
_pdbe_chem_comp_rdkit_properties.chi2n 1.868
_pdbe_chem_comp_rdkit_properties.chi3n 1.868
_pdbe_chem_comp_rdkit_properties.chi4n 1.144
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.400
_pdbe_chem_comp_rdkit_properties.kappa1 3.545
_pdbe_chem_comp_rdkit_properties.kappa2 3.568
_pdbe_chem_comp_rdkit_properties.kappa3 1.595
_pdbe_chem_comp_rdkit_properties.Phi 0.791
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TSA UniChem ChEMBL CHEMBL197577
TSA UniChem DrugBank DB08648
TSA UniChem PDBe TSA
TSA UniChem ZINC ZINC000005851130
TSA UniChem 'PubChem TPHARMA' 16948791
TSA UniChem PubChem 445314
TSA UniChem Nikkaji J728.844A
TSA UniChem BindingDb 50173884
TSA UniChem BRENDA 135694
TSA UniChem BRENDA 91422
TSA UniChem 'Probes And Drugs' PD004247
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TSA C1 -0.452 0.889 -0.430 ETKDGv3 1
TSA C2 -1.688 0.546 0.401 ETKDGv3 2
TSA C3 -2.050 -0.723 0.679 ETKDGv3 3
TSA C4 -1.350 -1.926 0.073 ETKDGv3 4
TSA O5 -2.135 -2.458 -0.962 ETKDGv3 5
TSA C5 0.039 -1.538 -0.471 ETKDGv3 6
TSA C6 -0.137 -0.288 -1.371 ETKDGv3 7
TSA O7 0.896 -1.351 0.659 ETKDGv3 8
TSA C8 1.665 -0.162 0.614 ETKDGv3 9
TSA C9 0.771 1.101 0.512 ETKDGv3 10
TSA C10 -0.736 2.153 -1.215 ETKDGv3 11
TSA O1 -0.871 3.251 -0.609 ETKDGv3 12
TSA O2 -0.878 2.118 -2.601 ETKDGv3 13
TSA C11 2.526 -0.084 1.838 ETKDGv3 14
TSA O3 2.059 -0.408 2.964 ETKDGv3 15
TSA O4 3.830 0.392 1.739 ETKDGv3 16
TSA H2 -2.247 1.352 0.869 ETKDGv3 17
TSA H3 -2.924 -0.895 1.301 ETKDGv3 18
TSA H4 -1.214 -2.698 0.866 ETKDGv3 19
TSA HO5 -2.902 -2.919 -0.533 ETKDGv3 20
TSA H5 0.439 -2.375 -1.084 ETKDGv3 21
TSA H61 -0.960 -0.449 -2.103 ETKDGv3 22
TSA H62 0.786 -0.095 -1.962 ETKDGv3 23
TSA H8 2.351 -0.207 -0.263 ETKDGv3 24
TSA H91 0.422 1.414 1.522 ETKDGv3 25
TSA H92 1.415 1.927 0.134 ETKDGv3 26
TSA HO2 -1.076 2.962 -3.125 ETKDGv3 27
TSA HO4 4.419 0.468 2.560 ETKDGv3 28
#