data_U5G
#
_chem_comp.id U5G
_chem_comp.name "boceprevir (bound form)"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C27 H47 N5 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
(1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-04-23
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 521.693
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code U5G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7K40
_chem_comp.pdbx_subcomponent_list "TBB TBG 12L 12N NH2"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
U5G C28 C1 C 0 1 N N N N N N 12.205 -21.633 22.992 4.735 0.417 -0.029 C24 TBB 1 1 polymer 1
U5G N29 N1 N 0 1 N N N N N N 12.737 -20.610 22.205 5.749 1.038 -0.663 N30 TBB 2 1 polymer 1
U5G O34 O1 O 0 1 N N N N N N 12.509 -21.851 24.131 4.968 -0.489 0.748 O31 TBB 3 1 polymer 1
U5G C30 C2 C 0 1 N N N N N N 13.958 -19.847 22.538 7.132 0.623 -0.414 C35 TBB 4 1 polymer 1
U5G C31 C3 C 0 1 N N N N N N 15.097 -20.926 22.400 8.081 1.483 -1.252 C40 TBB 5 1 polymer 1
U5G C32 C4 C 0 1 N N N N N N 14.043 -18.783 21.446 7.459 0.800 1.070 C41 TBB 6 1 polymer 1
U5G C33 C5 C 0 1 N N N N N N 13.978 -19.270 23.932 7.300 -0.848 -0.802 C42 TBB 7 1 polymer 1
U5G N27 N2 N 0 1 N N N N N N 11.140 -22.294 22.373 3.463 0.802 -0.253 N TBG 8 2 polymer 1
U5G C22 C6 C 0 1 N N S N N N 10.470 -23.341 23.050 2.361 0.131 0.440 CA TBG 9 2 polymer 1
U5G C23 C7 C 0 1 N N N N N N 8.983 -23.048 23.335 2.158 0.770 1.815 CB TBG 10 2 polymer 1
U5G C24 C8 C 0 1 N N N N N N 8.308 -24.272 23.993 1.760 2.237 1.641 CG1 TBG 11 2 polymer 1
U5G C25 C9 C 0 1 N N N N N N 8.159 -22.694 22.069 1.051 0.026 2.565 CG2 TBG 12 2 polymer 1
U5G C26 C10 C 0 1 N N N N N N 8.937 -21.857 24.333 3.460 0.686 2.614 CG3 TBG 13 2 polymer 1
U5G C21 C11 C 0 1 N N N N N N 10.594 -24.583 22.196 1.098 0.271 -0.371 C TBG 14 2 polymer 1
U5G O35 O2 O 0 1 N N N N N N 10.238 -24.644 21.000 0.951 1.226 -1.103 O TBG 15 2 polymer 1
U5G N20 N3 N 0 1 N N N N N N 11.055 -25.775 22.770 0.133 -0.666 -0.281 N19 12L 16 3 polymer 1
U5G C19 C12 C 0 1 N N N N N N 11.496 -25.903 24.120 0.164 -1.933 0.486 C20 12L 17 3 polymer 1
U5G C13 C13 C 0 1 N N S N N N 11.145 -27.068 22.030 -1.202 -0.658 -0.923 C21 12L 18 3 polymer 1
U5G C14 C14 C 0 1 N N R N N N 12.089 -27.865 22.801 -1.429 -2.119 -1.367 C22 12L 19 3 polymer 1
U5G C15 C15 C 0 1 N N S N N N 12.290 -27.183 24.161 -0.525 -2.963 -0.435 C23 12L 20 3 polymer 1
U5G C16 C16 C 0 1 N N N N N N 13.490 -27.491 23.264 -0.240 -2.891 -1.943 C24 12L 21 3 polymer 1
U5G C17 C17 C 0 1 N N N N N N 14.093 -26.314 22.496 0.977 -2.080 -2.390 C25 12L 22 3 polymer 1
U5G C18 C18 C 0 1 N N N N N N 14.430 -28.636 23.623 -0.545 -4.136 -2.778 C26 12L 23 3 polymer 1
U5G C12 C19 C 0 1 N N N N N N 9.761 -27.588 21.976 -2.259 -0.240 0.067 C27 12L 24 3 polymer 1
U5G O36 O3 O 0 1 N N N N N N 9.058 -27.593 22.989 -2.030 -0.293 1.257 O28 12L 25 3 polymer 1
U5G N11 N4 N 0 1 N N N N N N 9.354 -28.137 20.738 -3.458 0.194 -0.370 N29 12N 26 4 polymer 1
U5G C05 C20 C 0 1 N N S N N N 8.011 -28.643 20.620 -4.485 0.601 0.592 C30 12N 27 4 polymer 1
U5G C06 C21 C 0 1 N N N N N N 7.155 -27.792 19.694 -5.444 1.589 -0.073 C31 12N 28 4 polymer 1
U5G C07 C22 C 0 1 N N N N N N 6.751 -26.577 20.579 -4.689 2.873 -0.427 C32 12N 29 4 polymer 1
U5G C10 C23 C 0 1 N N N N N N 5.904 -26.711 21.866 -5.592 3.982 -0.992 C33 12N 30 4 polymer 1
U5G C08 C24 C 0 1 N N N N N N 5.688 -25.718 19.998 -4.012 2.829 -1.807 C34 12N 31 4 polymer 1
U5G C09 C25 C 0 1 N N N N N N 5.205 -25.428 21.437 -4.458 4.290 -1.985 C35 12N 32 4 polymer 1
U5G O04 O4 O 0 1 N Y N N N N 8.949 -30.834 21.153 -5.886 -1.255 -0.068 O36 12N 33 4 polymer 1
U5G C03 C26 C 0 1 N N R N N N 8.115 -30.132 20.331 -5.264 -0.631 1.058 C37 12N 34 4 polymer 1
U5G O01 O5 O 0 1 N N N N N N 5.979 -30.786 19.464 -4.122 -2.691 1.210 O38 12N 35 4 polymer 1
U5G C02 C27 C 0 1 N N N N N N 6.835 -30.878 20.258 -4.319 -1.605 1.713 C40 12N 36 4 polymer 1
U5G N37 N5 N 0 1 N N N N N N 6.581 -31.698 21.418 -3.693 -1.269 2.859 N NH2 37 5 polymer 1
U5G H1 H1 H 0 1 N N N N N N 12.259 -20.378 21.358 5.564 1.761 -1.283 H27 TBB 38 1 polymer 1
U5G H2 H2 H 0 1 N N N N N N 14.997 -21.670 23.204 7.961 2.530 -0.976 H31 TBB 39 1 polymer 1
U5G H3 H3 H 0 1 N N N N N N 15.011 -21.427 21.425 9.110 1.174 -1.067 H32 TBB 40 1 polymer 1
U5G H4 H4 H 0 1 N N N N N N 16.078 -20.435 22.475 7.848 1.357 -2.309 H33 TBB 41 1 polymer 1
U5G H5 H5 H 0 1 N N N N N N 14.932 -18.157 21.611 6.783 0.187 1.666 H34 TBB 42 1 polymer 1
U5G H6 H6 H 0 1 N N N N N N 14.116 -19.272 20.463 8.488 0.491 1.254 H35 TBB 43 1 polymer 1
U5G H7 H7 H 0 1 N N N N N N 13.141 -18.154 21.476 7.339 1.847 1.346 H36 TBB 44 1 polymer 1
U5G H8 H8 H 0 1 N N N N N N 13.914 -20.085 24.668 7.067 -0.973 -1.860 H37 TBB 45 1 polymer 1
U5G H9 H9 H 0 1 N N N N N N 14.913 -18.711 24.084 8.329 -1.156 -0.618 H38 TBB 46 1 polymer 1
U5G H10 H10 H 0 1 N N N N N N 13.121 -18.592 24.061 6.624 -1.460 -0.206 H39 TBB 47 1 polymer 1
U5G H11 H11 H 0 1 N N N N N N 10.852 -22.028 21.453 3.278 1.525 -0.873 H2 TBG 48 2 polymer 1
U5G H12 H12 H 0 1 N N N N N N 10.967 -23.534 24.012 2.599 -0.926 0.562 HA TBG 49 2 polymer 1
U5G H13 H13 H 0 1 N N N N N N 8.865 -24.556 24.898 0.832 2.297 1.072 HG11 TBG 50 2 polymer 1
U5G H14 H14 H 0 1 N N N N N N 7.273 -24.018 24.264 1.615 2.693 2.621 HG12 TBG 51 2 polymer 1
U5G H15 H15 H 0 1 N N N N N N 8.306 -25.114 23.285 2.548 2.767 1.107 HG13 TBG 52 2 polymer 1
U5G H16 H16 H 0 1 N N N N N N 7.114 -22.499 22.353 1.305 -1.032 2.632 HG21 TBG 53 2 polymer 1
U5G H17 H17 H 0 1 N N N N N N 8.583 -21.797 21.595 0.951 0.440 3.568 HG22 TBG 54 2 polymer 1
U5G H18 H18 H 0 1 N N N N N N 8.196 -23.535 21.361 0.109 0.140 2.029 HG23 TBG 55 2 polymer 1
U5G H19 H19 H 0 1 N N N N N N 9.521 -22.108 25.231 4.249 1.216 2.079 HG31 TBG 56 2 polymer 1
U5G H20 H20 H 0 1 N N N N N N 9.364 -20.962 23.856 3.316 1.142 3.593 HG32 TBG 57 2 polymer 1
U5G H21 H21 H 0 1 N N N N N N 7.893 -21.658 24.618 3.744 -0.359 2.737 HG33 TBG 58 2 polymer 1
U5G H22 H22 H 0 1 N N N N N N 12.129 -25.048 24.401 1.193 -2.231 0.686 H26 12L 59 3 polymer 1
U5G H23 H23 H 0 1 N N N N N N 10.635 -25.962 24.802 -0.390 -1.826 1.418 H27 12L 60 3 polymer 1
U5G H24 H24 H 0 1 N N N N N N 11.526 -26.895 21.013 -1.205 0.006 -1.787 H28 12L 61 3 polymer 1
U5G H25 H25 H 0 1 N N N N N N 11.861 -28.939 22.865 -2.443 -2.413 -1.639 H29 12L 62 3 polymer 1
U5G H26 H26 H 0 1 N N N N N N 12.166 -27.818 25.050 -0.874 -3.891 0.017 H30 12L 63 3 polymer 1
U5G H27 H27 H 0 1 N N N N N N 15.101 -26.101 22.882 1.377 -1.526 -1.541 H31 12L 64 3 polymer 1
U5G H28 H28 H 0 1 N N N N N N 14.156 -26.567 21.427 1.742 -2.754 -2.776 H32 12L 65 3 polymer 1
U5G H29 H29 H 0 1 N N N N N N 13.456 -25.427 22.625 0.681 -1.381 -3.172 H33 12L 66 3 polymer 1
U5G H30 H30 H 0 1 N N N N N N 13.873 -29.411 24.169 -1.152 -3.856 -3.639 H34 12L 67 3 polymer 1
U5G H31 H31 H 0 1 N N N N N N 14.851 -29.067 22.703 0.388 -4.582 -3.121 H35 12L 68 3 polymer 1
U5G H32 H32 H 0 1 N N N N N N 15.246 -28.256 24.256 -1.090 -4.858 -2.169 H36 12L 69 3 polymer 1
U5G H33 H33 H 0 1 N N N N N N 9.984 -28.173 19.962 -3.641 0.236 -1.322 H37 12N 70 4 polymer 1
U5G H34 H34 H 0 1 N N N N N N 7.551 -28.561 21.616 -4.010 1.076 1.450 H38 12N 71 4 polymer 1
U5G H35 H35 H 0 1 N N N N N N 6.266 -28.347 19.361 -5.851 1.145 -0.982 H39 12N 72 4 polymer 1
U5G H36 H36 H 0 1 N N N N N N 7.732 -27.464 18.817 -6.258 1.824 0.613 H40 12N 73 4 polymer 1
U5G H37 H37 H 0 1 N N N N N N 7.646 -25.975 20.795 -4.031 3.211 0.373 H41 12N 74 4 polymer 1
U5G H38 H38 H 0 1 N N N N N N 5.256 -27.599 21.902 -6.499 3.608 -1.467 H42 12N 75 4 polymer 1
U5G H39 H39 H 0 1 N N N N N N 6.474 -26.635 22.804 -5.786 4.789 -0.286 H43 12N 76 4 polymer 1
U5G H40 H40 H 0 1 N N N N N N 6.060 -24.836 19.455 -2.930 2.705 -1.759 H44 12N 77 4 polymer 1
U5G H41 H41 H 0 1 N N N N N N 4.960 -26.254 19.372 -4.487 2.139 -2.505 H45 12N 78 4 polymer 1
U5G H42 H42 H 0 1 N N N N N N 5.618 -24.511 21.882 -4.810 4.520 -2.991 H46 12N 79 4 polymer 1
U5G H43 H43 H 0 1 N N N N N N 4.112 -25.438 21.564 -3.736 5.016 -1.612 H47 12N 80 4 polymer 1
U5G H44 H44 H 0 1 N Y N N N N 9.781 -30.381 21.222 -5.264 -1.550 -0.747 H48 12N 81 4 polymer 1
U5G H45 H45 H 0 1 N N N N N N 8.544 -30.194 19.320 -6.028 -0.328 1.774 H49 12N 82 4 polymer 1
U5G H46 H46 H 0 1 N N N N N N 5.701 -32.161 21.520 -3.085 -1.896 3.280 HN2 NH2 83 5 polymer 1
U5G H47 H47 H 0 1 N N N N N N 7.285 -31.803 22.120 -3.850 -0.401 3.261 H47 NH2 84 5 polymer 1
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U5G O01 C02 DOUB N N 1
U5G C06 C07 SING N N 2
U5G C06 C05 SING N N 3
U5G C08 C07 SING N N 4
U5G C08 C09 SING N N 5
U5G C02 C03 SING N N 6
U5G C02 N37 SING N N 7
U5G C03 C05 SING N N 8
U5G C03 O04 SING N N 9
U5G C07 C10 SING N N 10
U5G C05 N11 SING N N 11
U5G N11 C12 SING N N 12
U5G O35 C21 DOUB N N 13
U5G C09 C10 SING N N 14
U5G C32 C30 SING N N 15
U5G C12 C13 SING N N 16
U5G C12 O36 DOUB N N 17
U5G C13 N20 SING N N 18
U5G C13 C14 SING N N 19
U5G C25 C23 SING N N 20
U5G C21 N20 SING N N 21
U5G C21 C22 SING N N 22
U5G N29 C30 SING N N 23
U5G N29 C28 SING N N 24
U5G N27 C28 SING N N 25
U5G N27 C22 SING N N 26
U5G C31 C30 SING N N 27
U5G C17 C16 SING N N 28
U5G C30 C33 SING N N 29
U5G N20 C19 SING N N 30
U5G C14 C16 SING N N 31
U5G C14 C15 SING N N 32
U5G C28 O34 DOUB N N 33
U5G C22 C23 SING N N 34
U5G C16 C18 SING N N 35
U5G C16 C15 SING N N 36
U5G C23 C24 SING N N 37
U5G C23 C26 SING N N 38
U5G C19 C15 SING N N 39
U5G N29 H1 SING N N 40
U5G C31 H2 SING N N 41
U5G C31 H3 SING N N 42
U5G C31 H4 SING N N 43
U5G C32 H5 SING N N 44
U5G C32 H6 SING N N 45
U5G C32 H7 SING N N 46
U5G C33 H8 SING N N 47
U5G C33 H9 SING N N 48
U5G C33 H10 SING N N 49
U5G N27 H11 SING N N 50
U5G C22 H12 SING N N 51
U5G C24 H13 SING N N 52
U5G C24 H14 SING N N 53
U5G C24 H15 SING N N 54
U5G C25 H16 SING N N 55
U5G C25 H17 SING N N 56
U5G C25 H18 SING N N 57
U5G C26 H19 SING N N 58
U5G C26 H20 SING N N 59
U5G C26 H21 SING N N 60
U5G C19 H22 SING N N 61
U5G C19 H23 SING N N 62
U5G C13 H24 SING N N 63
U5G C14 H25 SING N N 64
U5G C15 H26 SING N N 65
U5G C17 H27 SING N N 66
U5G C17 H28 SING N N 67
U5G C17 H29 SING N N 68
U5G C18 H30 SING N N 69
U5G C18 H31 SING N N 70
U5G C18 H32 SING N N 71
U5G N11 H33 SING N N 72
U5G C05 H34 SING N N 73
U5G C06 H35 SING N N 74
U5G C06 H36 SING N N 75
U5G C07 H37 SING N N 76
U5G C10 H38 SING N N 77
U5G C10 H39 SING N N 78
U5G C08 H40 SING N N 79
U5G C08 H41 SING N N 80
U5G C09 H42 SING N N 81
U5G C09 H43 SING N N 82
U5G O04 H44 SING N N 83
U5G C03 H45 SING N N 84
U5G N37 H46 SING N N 85
U5G N37 H47 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U5G SMILES ACDLabs 12.01 C(=O)(NC(C)(C)C)NC(C(C)(C)C)C(N1CC3C(C1C(=O)NC(CC2CCC2)C(O)C(=O)N)C3(C)C)=O
U5G InChI InChI 1.03 InChI=1S/C27H47N5O5/c1-25(2,3)20(30-24(37)31-26(4,5)6)23(36)32-13-15-17(27(15,7)8)18(32)22(35)29-16(19(33)21(28)34)12-14-10-9-11-14/h14-20,33H,9-13H2,1-8H3,(H2,28,34)(H,29,35)(H2,30,31,37)/t15-,16-,17-,18-,19+,20+/m0/s1
U5G InChIKey InChI 1.03 FEBWCINGHXXUCV-GFLQDLJJSA-N
U5G SMILES_CANONICAL CACTVS 3.385 CC(C)(C)NC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](CC3CCC3)[C@@H](O)C(N)=O)C2(C)C)C(C)(C)C
U5G SMILES CACTVS 3.385 CC(C)(C)NC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](CC3CCC3)[CH](O)C(N)=O)C2(C)C)C(C)(C)C
U5G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)N[C@@H](CC3CCC3)[C@H](C(=O)N)O)C
U5G SMILES "OpenEye OEToolkits" 2.0.7 CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)NC(CC3CCC3)C(C(=O)N)O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U5G "SYSTEMATIC NAME" ACDLabs 12.01 (1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
U5G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-azanyl-1-cyclobutyl-3-oxidanyl-4-oxidanylidene-butan-2-yl]-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U5G 'Create component' 2020-04-23 RCSB
U5G 'Initial release' 2020-05-06 RCSB
U5G 'Modify name' 2020-05-06 RCSB
U5G 'Other modification' 2020-10-22 RCSB
U5G 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id U5G
_pdbx_chem_comp_synonyms.name
(1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id U5G
_pdbe_chem_comp_synonyms.name
'(1R,2S,5S)-N-[(2S,3R)-4-amino-1-cyclobutyl-3-hydroxy-4-oxobutan-2-yl]-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
U5G C28 C 6.549 -4.469 1
U5G N29 N 5.049 -4.469 2
U5G O34 O 7.299 -5.768 3
U5G C30 C 4.299 -5.768 4
U5G C31 C 3.000 -5.018 5
U5G C32 C 3.549 -7.067 6
U5G C33 C 5.598 -6.518 7
U5G N27 N 7.299 -3.170 8
U5G C22 C 8.799 -3.170 9
U5G C23 C 9.549 -4.469 10
U5G C24 C 8.250 -5.219 11
U5G C25 C 10.299 -5.768 12
U5G C26 C 10.848 -3.719 13
U5G C21 C 9.549 -1.871 14
U5G O35 O 8.799 -0.572 15
U5G N20 N 11.049 -1.871 16
U5G C19 C 11.931 -3.084 17
U5G C13 C 11.931 -0.657 18
U5G C14 C 13.357 -1.121 19
U5G C15 C 13.357 -2.621 20
U5G C16 C 14.657 -1.871 21
U5G C17 C 15.407 -3.170 22
U5G C18 C 15.407 -0.572 23
U5G C12 C 11.467 0.769 24
U5G O36 O 10.000 1.081 25
U5G N11 N 12.471 1.884 26
U5G C05 C 12.007 3.311 27
U5G C06 C 10.540 3.623 28
U5G C07 C 10.076 5.049 29
U5G C10 C 8.740 5.730 30
U5G C08 C 10.758 6.386 31
U5G C09 C 9.421 7.067 32
U5G O04 O 12.547 5.852 33
U5G C03 C 13.011 4.425 34
U5G O01 O 14.942 2.687 35
U5G C02 C 14.478 4.114 36
U5G N37 N 15.482 5.228 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
U5G O01 C02 DOUBLE NONE 1
U5G C06 C07 SINGLE NONE 2
U5G C05 C06 SINGLE BEGINWEDGE 3
U5G C08 C07 SINGLE NONE 4
U5G C08 C09 SINGLE NONE 5
U5G C02 C03 SINGLE NONE 6
U5G C02 N37 SINGLE NONE 7
U5G C03 C05 SINGLE NONE 8
U5G C03 O04 SINGLE BEGINWEDGE 9
U5G C07 C10 SINGLE NONE 10
U5G C05 N11 SINGLE NONE 11
U5G N11 C12 SINGLE NONE 12
U5G O35 C21 DOUBLE NONE 13
U5G C09 C10 SINGLE NONE 14
U5G C32 C30 SINGLE NONE 15
U5G C13 C12 SINGLE BEGINDASH 16
U5G C12 O36 DOUBLE NONE 17
U5G C13 N20 SINGLE NONE 18
U5G C13 C14 SINGLE NONE 19
U5G C25 C23 SINGLE NONE 20
U5G C21 N20 SINGLE NONE 21
U5G C21 C22 SINGLE NONE 22
U5G N29 C30 SINGLE NONE 23
U5G N29 C28 SINGLE NONE 24
U5G N27 C28 SINGLE NONE 25
U5G C22 N27 SINGLE BEGINDASH 26
U5G C31 C30 SINGLE NONE 27
U5G C17 C16 SINGLE NONE 28
U5G C30 C33 SINGLE NONE 29
U5G N20 C19 SINGLE NONE 30
U5G C14 C16 SINGLE NONE 31
U5G C14 C15 SINGLE NONE 32
U5G C28 O34 DOUBLE NONE 33
U5G C22 C23 SINGLE NONE 34
U5G C16 C18 SINGLE NONE 35
U5G C16 C15 SINGLE NONE 36
U5G C23 C24 SINGLE NONE 37
U5G C23 C26 SINGLE NONE 38
U5G C19 C15 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
U5G MurckoScaffold S1 scaffold 'O=C(NCCC1CCC1)[C@H]1NC[C@@H]2C[C@@H]21' InChI=1S/C12H20N2O/c15-12(11-10-6-9(10)7-14-11)13-5-4-8-2-1-3-8/h8-11,14H,1-7H2,(H,13,15)/t9-,10-,11-/m0/s1 BVDBMSQMESGFFW-DCAQKATOSA-N
U5G amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
U5G cyclobutane F2 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
U5G cyclopropane F3 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
U5G peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
U5G Z1245580425 F5 fragment CC1CCCCN1CCN InChI=1S/C8H18N2/c1-8-4-2-3-6-10(8)7-5-9/h8H,2-7,9H2,1H3 DBSDZVMWEMKFCH-UHFFFAOYSA-N
U5G Z927412236 F6 fragment CC(N)C(=O)N1CCCCC1C InChI=1S/C9H18N2O/c1-7-5-3-4-6-11(7)9(12)8(2)10/h7-8H,3-6,10H2,1-2H3 FZZIMRQDJKXDFD-UHFFFAOYSA-N
U5G Z1741785925 F7 fragment CC1CCNC(C(N)=O)C1 InChI=1S/C7H14N2O/c1-5-2-3-9-6(4-5)7(8)10/h5-6,9H,2-4H2,1H3,(H2,8,10) RIOBEGOHZRAHCD-UHFFFAOYSA-N
U5G Z1245580461 F8 fragment CC1CCN(CCN)CC1 InChI=1S/C8H18N2/c1-8-2-5-10(6-3-8)7-4-9/h8H,2-7,9H2,1H3 BTEYOILJVIONOI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
U5G N20 S1 1
U5G C19 S1 1
U5G C13 S1 1
U5G C14 S1 1
U5G C15 S1 1
U5G C16 S1 1
U5G C12 S1 1
U5G O36 S1 1
U5G N11 S1 1
U5G C05 S1 1
U5G C06 S1 1
U5G C07 S1 1
U5G C10 S1 1
U5G C08 S1 1
U5G C09 S1 1
U5G N20 F1 1
U5G C21 F1 1
U5G O35 F1 1
U5G C22 F1 1
U5G N11 F1 2
U5G C12 F1 2
U5G O36 F1 2
U5G C13 F1 2
U5G N37 F1 3
U5G C02 F1 3
U5G O01 F1 3
U5G C03 F1 3
U5G C07 F2 1
U5G C08 F2 1
U5G C09 F2 1
U5G C10 F2 1
U5G C14 F3 1
U5G C16 F3 1
U5G C15 F3 1
U5G O35 F4 1
U5G C21 F4 1
U5G C22 F4 1
U5G N27 F4 1
U5G O36 F4 2
U5G C12 F4 2
U5G C13 F4 2
U5G N20 F4 2
U5G C12 F5 1
U5G C13 F5 1
U5G C14 F5 1
U5G C16 F5 1
U5G C15 F5 1
U5G C19 F5 1
U5G N20 F5 1
U5G C21 F5 1
U5G C22 F5 1
U5G N27 F5 1
U5G C23 F6 1
U5G C22 F6 1
U5G N27 F6 1
U5G C21 F6 1
U5G O35 F6 1
U5G N20 F6 1
U5G C19 F6 1
U5G C15 F6 1
U5G C16 F6 1
U5G C14 F6 1
U5G C13 F6 1
U5G C12 F6 1
U5G C17 F7 1
U5G C16 F7 1
U5G C15 F7 1
U5G C19 F7 1
U5G N20 F7 1
U5G C13 F7 1
U5G C14 F7 1
U5G C12 F7 1
U5G O36 F7 1
U5G N11 F7 1
U5G C18 F7 2
U5G C16 F7 2
U5G C15 F7 2
U5G C19 F7 2
U5G N20 F7 2
U5G C13 F7 2
U5G C14 F7 2
U5G C12 F7 2
U5G O36 F7 2
U5G N11 F7 2
U5G C17 F8 1
U5G C16 F8 1
U5G C14 F8 1
U5G C13 F8 1
U5G N20 F8 1
U5G C21 F8 1
U5G C22 F8 1
U5G N27 F8 1
U5G C19 F8 1
U5G C15 F8 1
U5G C18 F8 2
U5G C16 F8 2
U5G C14 F8 2
U5G C13 F8 2
U5G N20 F8 2
U5G C21 F8 2
U5G C22 F8 2
U5G N27 F8 2
U5G C19 F8 2
U5G C15 F8 2
#
_pdbe_chem_comp_rdkit_properties.comp_id U5G
_pdbe_chem_comp_rdkit_properties.exactmw 521.358
_pdbe_chem_comp_rdkit_properties.amw 521.703
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 84
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 5
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.852
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 286.810
_pdbe_chem_comp_rdkit_properties.tpsa 153.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.503
_pdbe_chem_comp_rdkit_properties.CrippenMR 140.015
_pdbe_chem_comp_rdkit_properties.chi0v 17.777
_pdbe_chem_comp_rdkit_properties.chi1v 9.257
_pdbe_chem_comp_rdkit_properties.chi2v 4.297
_pdbe_chem_comp_rdkit_properties.chi3v 4.297
_pdbe_chem_comp_rdkit_properties.chi4v 2.711
_pdbe_chem_comp_rdkit_properties.chi0n 64.777
_pdbe_chem_comp_rdkit_properties.chi1n 32.401
_pdbe_chem_comp_rdkit_properties.chi2n 4.297
_pdbe_chem_comp_rdkit_properties.chi3n 4.297
_pdbe_chem_comp_rdkit_properties.chi4n 2.711
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.360
_pdbe_chem_comp_rdkit_properties.kappa1 5.604
_pdbe_chem_comp_rdkit_properties.kappa2 10.076
_pdbe_chem_comp_rdkit_properties.kappa3 6.382
_pdbe_chem_comp_rdkit_properties.Phi 1.526
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
U5G UniChem ChEMBL CHEMBL3542332
U5G UniChem PDBe U5G
U5G UniChem ZINC ZINC000053500066
U5G UniChem PubChem 71316139
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
U5G C28 1.864 1.641 -0.442 ETKDGv3 1
U5G N29 1.732 3.055 -0.669 ETKDGv3 2
U5G O34 2.182 0.868 -1.386 ETKDGv3 3
U5G C30 1.902 3.726 -1.973 ETKDGv3 4
U5G C31 1.673 5.241 -1.790 ETKDGv3 5
U5G C32 3.334 3.509 -2.501 ETKDGv3 6
U5G C33 0.870 3.197 -2.988 ETKDGv3 7
U5G N27 1.639 1.111 0.875 ETKDGv3 8
U5G C22 1.834 -0.304 1.219 ETKDGv3 9
U5G C23 3.207 -0.532 1.947 ETKDGv3 10
U5G C24 3.377 -2.026 2.301 ETKDGv3 11
U5G C25 4.363 -0.134 1.001 ETKDGv3 12
U5G C26 3.334 0.300 3.244 ETKDGv3 13
U5G C21 0.638 -0.795 2.019 ETKDGv3 14
U5G O35 0.283 -0.152 3.045 ETKDGv3 15
U5G N20 -0.099 -1.981 1.651 ETKDGv3 16
U5G C19 -0.957 -2.673 2.599 ETKDGv3 17
U5G C13 -0.120 -2.587 0.324 ETKDGv3 18
U5G C14 -1.021 -3.823 0.425 ETKDGv3 19
U5G C15 -1.554 -3.869 1.863 ETKDGv3 20
U5G C16 -0.637 -4.983 1.350 ETKDGv3 21
U5G C17 -1.340 -6.308 1.045 ETKDGv3 22
U5G C18 0.807 -5.083 1.870 ETKDGv3 23
U5G C12 -0.687 -1.616 -0.677 ETKDGv3 24
U5G O36 0.031 -1.240 -1.641 ETKDGv3 25
U5G N11 -2.030 -1.121 -0.525 ETKDGv3 26
U5G C05 -2.633 -0.055 -1.337 ETKDGv3 27
U5G C06 -1.921 1.292 -1.088 ETKDGv3 28
U5G C07 -2.001 1.723 0.390 ETKDGv3 29
U5G C10 -1.449 3.124 0.648 ETKDGv3 30
U5G C08 -3.386 2.196 0.832 ETKDGv3 31
U5G C09 -2.828 3.586 1.098 ETKDGv3 32
U5G O04 -3.084 -1.763 -3.030 ETKDGv3 33
U5G C03 -2.659 -0.436 -2.843 ETKDGv3 34
U5G O01 -2.996 1.239 -4.524 ETKDGv3 35
U5G C02 -3.526 0.502 -3.649 ETKDGv3 36
U5G N37 -4.936 0.578 -3.429 ETKDGv3 37
U5G H1 1.508 3.641 0.168 ETKDGv3 38
U5G H2 2.404 5.659 -1.065 ETKDGv3 39
U5G H3 1.787 5.780 -2.755 ETKDGv3 40
U5G H4 0.649 5.434 -1.401 ETKDGv3 41
U5G H5 3.517 2.446 -2.759 ETKDGv3 42
U5G H6 4.077 3.817 -1.735 ETKDGv3 43
U5G H7 3.506 4.109 -3.421 ETKDGv3 44
U5G H8 0.957 3.743 -3.952 ETKDGv3 45
U5G H9 -0.161 3.337 -2.600 ETKDGv3 46
U5G H10 1.020 2.119 -3.200 ETKDGv3 47
U5G H11 1.389 1.783 1.635 ETKDGv3 48
U5G H12 1.878 -0.889 0.282 ETKDGv3 49
U5G H13 2.624 -2.343 3.053 ETKDGv3 50
U5G H14 4.382 -2.219 2.733 ETKDGv3 51
U5G H15 3.262 -2.659 1.394 ETKDGv3 52
U5G H16 5.349 -0.352 1.466 ETKDGv3 53
U5G H17 4.334 0.952 0.771 ETKDGv3 54
U5G H18 4.301 -0.698 0.045 ETKDGv3 55
U5G H19 3.224 1.385 3.039 ETKDGv3 56
U5G H20 2.579 -0.002 3.997 ETKDGv3 57
U5G H21 4.334 0.147 3.705 ETKDGv3 58
U5G H22 -0.375 -3.008 3.484 ETKDGv3 59
U5G H23 -1.774 -1.995 2.928 ETKDGv3 60
U5G H24 0.900 -2.910 0.024 ETKDGv3 61
U5G H25 -1.812 -4.005 -0.336 ETKDGv3 62
U5G H26 -2.651 -4.044 1.902 ETKDGv3 63
U5G H27 -0.770 -6.860 0.269 ETKDGv3 64
U5G H28 -2.378 -6.157 0.677 ETKDGv3 65
U5G H29 -1.382 -6.926 1.966 ETKDGv3 66
U5G H30 1.270 -4.109 2.103 ETKDGv3 67
U5G H31 0.819 -5.695 2.797 ETKDGv3 68
U5G H32 1.436 -5.587 1.107 ETKDGv3 69
U5G H33 -2.615 -1.517 0.245 ETKDGv3 70
U5G H34 -3.689 0.058 -1.004 ETKDGv3 71
U5G H35 -0.853 1.208 -1.377 ETKDGv3 72
U5G H36 -2.376 2.080 -1.728 ETKDGv3 73
U5G H37 -1.565 0.975 1.088 ETKDGv3 74
U5G H38 -0.710 3.143 1.477 ETKDGv3 75
U5G H39 -1.108 3.656 -0.267 ETKDGv3 76
U5G H40 -4.150 2.203 0.024 ETKDGv3 77
U5G H41 -3.727 1.691 1.763 ETKDGv3 78
U5G H42 -2.856 3.859 2.175 ETKDGv3 79
U5G H43 -3.260 4.356 0.422 ETKDGv3 80
U5G H44 -3.949 -1.878 -2.557 ETKDGv3 81
U5G H45 -1.627 -0.363 -3.246 ETKDGv3 82
U5G H46 -5.518 1.237 -3.993 ETKDGv3 83
U5G H47 -5.405 -0.011 -2.707 ETKDGv3 84
#