data_U8B
#
_chem_comp.id U8B
_chem_comp.name
"(2~{S})-2-azanyl-5-[[(2~{R})-3-[(2~{R},5~{R})-5-(hydroxymethyl)-3,6-bis(oxidanylidene)-2-(phenylmethyl)-5-sulfanyl-piperazin-2-yl]sulfanyl-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H29 N5 O9 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-01-28
_chem_comp.pdbx_modified_date 2021-05-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 571.624
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code U8B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7NC6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U8B C4 C1 C 0 1 N N N N N N -12.804 1.947 56.551 1.988 -3.446 1.401 C4 U8B 1
U8B C5 C2 C 0 1 N N R N N N -13.751 3.118 56.763 2.096 -2.007 0.892 C5 U8B 2
U8B C7 C3 C 0 1 N N N N N N -16.573 3.793 55.856 0.767 0.443 0.347 C7 U8B 3
U8B C8 C4 C 0 1 N N R N N N -17.407 4.375 56.995 -0.506 1.283 0.468 C8 U8B 4
U8B C10 C5 C 0 1 N N N N N N -17.430 3.123 59.085 -2.884 0.835 0.177 C10 U8B 5
U8B C13 C6 C 0 1 N N N N N N -17.589 2.075 61.315 -5.349 0.579 0.103 C13 U8B 6
U8B C21 C7 C 0 1 N N N N N N -19.337 6.943 54.941 0.898 4.744 -0.371 C21 U8B 7
U8B C22 C8 C 0 1 N N N N N N -18.730 8.161 54.261 2.036 5.456 0.313 C22 U8B 8
U8B O18 O1 O 0 1 N N N N N N -19.045 -0.801 60.783 -8.528 1.046 -0.394 O18 U8B 9
U8B C16 C9 C 0 1 N N N N N N -18.095 -0.437 61.509 -7.801 0.210 0.089 C16 U8B 10
U8B O17 O2 O 0 1 N N N N N N -17.106 -1.135 61.814 -8.149 -0.402 1.232 O17 U8B 11
U8B C14 C10 C 0 1 N N S N N N -18.202 0.966 62.143 -6.504 -0.145 -0.592 C14 U8B 12
U8B N15 N1 N 0 1 N N N N N N -17.567 0.967 63.474 -6.563 0.266 -2.001 N15 U8B 13
U8B C12 C11 C 0 1 N N N N N N -17.934 1.882 59.857 -4.022 0.123 -0.507 C12 U8B 14
U8B O11 O3 O 0 1 N N N N N N -16.529 3.833 59.534 -3.112 1.629 1.065 O11 U8B 15
U8B N9 N2 N 0 1 N N N N N N -17.911 3.284 57.851 -1.612 0.590 -0.198 N9 U8B 16
U8B C19 C12 C 0 1 N N N N N N -18.589 5.174 56.428 -0.287 2.623 -0.185 C19 U8B 17
U8B O25 O4 O 0 1 N N N N N N -19.747 4.938 56.768 -0.987 2.966 -1.115 O25 U8B 18
U8B N20 N3 N 0 1 N N N N N N -18.278 6.137 55.556 0.686 3.441 0.264 N20 U8B 19
U8B O23 O5 O 0 1 N N N N N N -19.040 8.351 53.066 2.611 4.929 1.236 O23 U8B 20
U8B O24 O6 O 0 1 N N N N N N -17.974 8.881 54.950 2.412 6.676 -0.103 O24 U8B 21
U8B S6 S1 S 0 1 N N N N N N -15.436 2.429 56.396 0.504 -1.171 1.133 S6 U8B 22
U8B C3 C13 C 0 1 Y N N N N N -11.413 2.177 56.739 1.017 -4.211 0.539 C3 U8B 23
U8B C55 C14 C 0 1 Y N N N N N -10.858 2.702 57.910 1.468 -4.886 -0.580 C55 U8B 24
U8B C56 C15 C 0 1 Y N N N N N -9.479 2.860 58.042 0.578 -5.588 -1.370 C56 U8B 25
U8B C57 C16 C 0 1 Y N N N N N -8.619 2.473 57.020 -0.765 -5.616 -1.041 C57 U8B 26
U8B C1 C17 C 0 1 Y N N N N N -9.151 1.927 55.859 -1.216 -4.942 0.078 C1 U8B 27
U8B C2 C18 C 0 1 Y N N N N N -10.530 1.774 55.733 -0.325 -4.244 0.871 C2 U8B 28
U8B C53 C19 C 0 1 N N N N N N -13.729 3.592 58.090 3.152 -1.287 1.676 C53 U8B 29
U8B O54 O7 O 0 1 N N N N N N -13.794 2.808 59.044 3.230 -1.490 2.869 O54 U8B 30
U8B N52 N4 N 0 1 N N N N N N -13.653 4.972 58.401 4.011 -0.431 1.113 N52 U8B 31
U8B N26 N5 N 0 1 N N N N N N -13.380 4.207 55.805 2.412 -2.026 -0.530 N26 U8B 32
U8B C27 C20 C 0 1 N N N N N N -13.271 5.577 56.126 3.274 -1.173 -1.092 C27 U8B 33
U8B O28 O8 O 0 1 N N N N N N -12.955 6.342 55.213 3.480 -1.256 -2.284 O28 U8B 34
U8B C29 C21 C 0 1 N N R N N N -13.556 6.079 57.407 3.998 -0.119 -0.309 C29 U8B 35
U8B C50 C22 C 0 1 N N N N N N -12.448 7.034 57.882 5.439 -0.020 -0.814 C50 U8B 36
U8B O51 O9 O 0 1 N N N N N N -12.708 7.483 59.219 5.435 0.328 -2.200 O51 U8B 37
U8B S30 S2 S 0 1 N N N N N N -15.136 7.009 57.269 3.172 1.477 -0.557 S30 U8B 38
U8B H1 H1 H 0 1 N N N N N N -12.942 1.596 55.518 2.967 -3.922 1.355 H1 U8B 39
U8B H2 H2 H 0 1 N N N N N N -13.103 1.153 57.251 1.633 -3.441 2.431 H2 U8B 40
U8B H3 H3 H 0 1 N N N N N N -15.966 4.601 55.420 1.009 0.299 -0.706 H3 U8B 41
U8B H4 H4 H 0 1 N N N N N N -17.257 3.395 55.092 1.590 0.958 0.842 H4 U8B 42
U8B H5 H5 H 0 1 N N N N N N -16.775 5.050 57.591 -0.748 1.427 1.521 H5 U8B 43
U8B H6 H6 H 0 1 N N N N N N -16.496 2.058 61.436 -5.460 1.655 -0.032 H6 U8B 44
U8B H7 H7 H 0 1 N N N N N N -17.981 3.044 61.657 -5.360 0.343 1.167 H7 U8B 45
U8B H8 H8 H 0 1 N N N N N N -20.043 7.273 55.718 -0.009 5.342 -0.285 H8 U8B 46
U8B H9 H9 H 0 1 N N N N N N -19.871 6.336 54.195 1.140 4.600 -1.424 H9 U8B 47
U8B H10 H10 H 0 1 N N N N N N -17.184 -1.991 61.409 -8.990 -0.141 1.631 H10 U8B 48
U8B H11 H11 H 0 1 N N N N N N -19.271 1.191 62.269 -6.346 -1.222 -0.534 H11 U8B 49
U8B H12 H12 H 0 1 N N N N N N -17.963 0.238 64.033 -7.277 -0.245 -2.498 H12 U8B 50
U8B H13 H13 H 0 1 N N N N N N -16.584 0.814 63.374 -6.709 1.261 -2.082 H13 U8B 51
U8B H15 H15 H 0 1 N N N N N N -19.023 1.785 59.740 -4.011 0.359 -1.571 H15 U8B 52
U8B H16 H16 H 0 1 N N N N N N -17.442 0.977 59.472 -3.910 -0.953 -0.372 H16 U8B 53
U8B H17 H17 H 0 1 N N N N N N -18.615 2.664 57.505 -1.430 -0.045 -0.908 H17 U8B 54
U8B H18 H18 H 0 1 N N N N N N -17.321 6.308 55.322 1.245 3.166 1.007 H18 U8B 55
U8B H19 H19 H 0 1 N N N N N N -17.663 9.608 54.424 3.147 7.093 0.367 H19 U8B 56
U8B H20 H20 H 0 1 N N N N N N -11.507 2.989 58.724 2.517 -4.864 -0.837 H20 U8B 57
U8B H21 H21 H 0 1 N N N N N N -9.074 3.287 58.948 0.930 -6.114 -2.245 H21 U8B 58
U8B H22 H22 H 0 1 N N N N N N -7.551 2.595 57.128 -1.461 -6.164 -1.659 H22 U8B 59
U8B H23 H23 H 0 1 N N N N N N -8.497 1.622 55.056 -2.265 -4.963 0.334 H23 U8B 60
U8B H24 H24 H 0 1 N N N N N N -10.928 1.331 54.832 -0.678 -3.717 1.745 H24 U8B 61
U8B H25 H25 H 0 1 N N N N N N -13.665 5.225 59.368 4.671 0.001 1.677 H25 U8B 62
U8B H26 H26 H 0 1 N N N N N N -13.194 3.942 54.859 1.978 -2.685 -1.093 H26 U8B 63
U8B H27 H27 H 0 1 N N N N N N -11.482 6.508 57.859 5.970 0.745 -0.249 H27 U8B 64
U8B H28 H28 H 0 1 N N N N N N -12.408 7.904 57.210 5.937 -0.981 -0.683 H28 U8B 65
U8B H29 H29 H 0 1 N N N N N N -12.015 8.071 59.496 6.317 0.408 -2.588 H29 U8B 66
U8B H30 H30 H 0 1 N N N N N N -15.311 7.428 58.487 3.910 2.319 0.188 H30 U8B 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U8B O23 C22 DOUB N N 1
U8B C22 C21 SING N N 2
U8B C22 O24 SING N N 3
U8B C21 N20 SING N N 4
U8B O28 C27 DOUB N N 5
U8B N20 C19 SING N N 6
U8B C2 C1 DOUB Y N 7
U8B C2 C3 SING Y N 8
U8B N26 C27 SING N N 9
U8B N26 C5 SING N N 10
U8B C7 S6 SING N N 11
U8B C7 C8 SING N N 12
U8B C1 C57 SING Y N 13
U8B C27 C29 SING N N 14
U8B S6 C5 SING N N 15
U8B C19 O25 DOUB N N 16
U8B C19 C8 SING N N 17
U8B C4 C3 SING N N 18
U8B C4 C5 SING N N 19
U8B C3 C55 DOUB Y N 20
U8B C5 C53 SING N N 21
U8B C8 N9 SING N N 22
U8B C57 C56 DOUB Y N 23
U8B S30 C29 SING N N 24
U8B C29 C50 SING N N 25
U8B C29 N52 SING N N 26
U8B N9 C10 SING N N 27
U8B C50 O51 SING N N 28
U8B C55 C56 SING Y N 29
U8B C53 N52 SING N N 30
U8B C53 O54 DOUB N N 31
U8B C10 O11 DOUB N N 32
U8B C10 C12 SING N N 33
U8B C12 C13 SING N N 34
U8B O18 C16 DOUB N N 35
U8B C13 C14 SING N N 36
U8B C16 O17 SING N N 37
U8B C16 C14 SING N N 38
U8B C14 N15 SING N N 39
U8B C4 H1 SING N N 40
U8B C4 H2 SING N N 41
U8B C7 H3 SING N N 42
U8B C7 H4 SING N N 43
U8B C8 H5 SING N N 44
U8B C13 H6 SING N N 45
U8B C13 H7 SING N N 46
U8B C21 H8 SING N N 47
U8B C21 H9 SING N N 48
U8B O17 H10 SING N N 49
U8B C14 H11 SING N N 50
U8B N15 H12 SING N N 51
U8B N15 H13 SING N N 52
U8B C12 H15 SING N N 53
U8B C12 H16 SING N N 54
U8B N9 H17 SING N N 55
U8B N20 H18 SING N N 56
U8B O24 H19 SING N N 57
U8B C55 H20 SING N N 58
U8B C56 H21 SING N N 59
U8B C57 H22 SING N N 60
U8B C1 H23 SING N N 61
U8B C2 H24 SING N N 62
U8B N52 H25 SING N N 63
U8B N26 H26 SING N N 64
U8B C50 H27 SING N N 65
U8B C50 H28 SING N N 66
U8B O51 H29 SING N N 67
U8B S30 H30 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U8B InChI InChI 1.03 InChI=1S/C22H29N5O9S2/c23-13(18(33)34)6-7-15(29)25-14(17(32)24-9-16(30)31)10-38-22(8-12-4-2-1-3-5-12)20(36)26-21(37,11-28)19(35)27-22/h1-5,13-14,28,37H,6-11,23H2,(H,24,32)(H,25,29)(H,26,36)(H,27,35)(H,30,31)(H,33,34)/t13-,14-,21+,22+/m0/s1
U8B InChIKey InChI 1.03 BVLPJUGYSWKCGB-HCIHMXRSSA-N
U8B SMILES_CANONICAL CACTVS 3.385 N[C@@H](CCC(=O)N[C@@H](CS[C@@]1(Cc2ccccc2)NC(=O)[C@](S)(CO)NC1=O)C(=O)NCC(O)=O)C(O)=O
U8B SMILES CACTVS 3.385 N[CH](CCC(=O)N[CH](CS[C]1(Cc2ccccc2)NC(=O)[C](S)(CO)NC1=O)C(=O)NCC(O)=O)C(O)=O
U8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)C[C@]2(C(=O)N[C@](C(=O)N2)(CO)S)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N
U8B SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)CC2(C(=O)NC(C(=O)N2)(CO)S)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N
#
_pdbx_chem_comp_identifier.comp_id U8B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{S})-2-azanyl-5-[[(2~{R})-3-[(2~{R},5~{R})-5-(hydroxymethyl)-3,6-bis(oxidanylidene)-2-(phenylmethyl)-5-sulfanyl-piperazin-2-yl]sulfanyl-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U8B 'Create component' 2021-01-28 PDBE
U8B 'Initial release' 2021-05-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
U8B C4 C 13.215 -1.748 1
U8B C5 C 12.465 -3.047 2
U8B C7 C 10.215 -1.748 3
U8B C8 C 9.465 -0.449 4
U8B C10 C 9.465 2.150 5
U8B C13 C 9.465 4.748 6
U8B C21 C 5.715 -1.748 7
U8B C22 C 4.965 -3.047 8
U8B O18 O 10.215 8.645 9
U8B C16 C 9.465 7.346 10
U8B O17 O 7.965 7.346 11
U8B C14 C 10.215 6.047 12
U8B N15 N 11.715 6.047 13
U8B C12 C 10.215 3.449 14
U8B O11 O 7.965 2.150 15
U8B N9 N 10.215 0.851 16
U8B C19 C 7.965 -0.449 17
U8B O25 O 7.215 0.851 18
U8B N20 N 7.215 -1.748 19
U8B O23 O 3.465 -3.047 20
U8B O24 O 5.715 -4.346 21
U8B S6 S 11.715 -1.748 22
U8B C3 C 14.715 -1.748 23
U8B C55 C 15.465 -0.449 24
U8B C56 C 16.965 -0.449 25
U8B C57 C 17.715 -1.748 26
U8B C1 C 16.965 -3.047 27
U8B C2 C 15.465 -3.047 28
U8B C53 C 11.166 -3.797 29
U8B O54 O 9.867 -3.047 30
U8B N52 N 11.166 -5.297 31
U8B N26 N 13.764 -3.797 32
U8B C27 C 13.764 -5.297 33
U8B O28 O 15.063 -6.047 34
U8B C29 C 12.465 -6.047 35
U8B C50 C 11.715 -7.346 36
U8B O51 O 12.465 -8.645 37
U8B S30 S 13.215 -7.346 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
U8B O23 C22 DOUBLE NONE 1
U8B C22 C21 SINGLE NONE 2
U8B C22 O24 SINGLE NONE 3
U8B C21 N20 SINGLE NONE 4
U8B O28 C27 DOUBLE NONE 5
U8B N20 C19 SINGLE NONE 6
U8B C2 C1 DOUBLE NONE 7
U8B C2 C3 SINGLE NONE 8
U8B N26 C27 SINGLE NONE 9
U8B N26 C5 SINGLE NONE 10
U8B C7 S6 SINGLE NONE 11
U8B C8 C7 SINGLE BEGINWEDGE 12
U8B C1 C57 SINGLE NONE 13
U8B C27 C29 SINGLE NONE 14
U8B S6 C5 SINGLE NONE 15
U8B C19 O25 DOUBLE NONE 16
U8B C19 C8 SINGLE NONE 17
U8B C4 C3 SINGLE NONE 18
U8B C5 C4 SINGLE BEGINDASH 19
U8B C3 C55 DOUBLE NONE 20
U8B C5 C53 SINGLE NONE 21
U8B C8 N9 SINGLE NONE 22
U8B C57 C56 DOUBLE NONE 23
U8B C29 S30 SINGLE BEGINWEDGE 24
U8B C29 C50 SINGLE NONE 25
U8B C29 N52 SINGLE NONE 26
U8B N9 C10 SINGLE NONE 27
U8B C50 O51 SINGLE NONE 28
U8B C55 C56 SINGLE NONE 29
U8B C53 N52 SINGLE NONE 30
U8B C53 O54 DOUBLE NONE 31
U8B C10 O11 DOUBLE NONE 32
U8B C10 C12 SINGLE NONE 33
U8B C12 C13 SINGLE NONE 34
U8B O18 C16 DOUBLE NONE 35
U8B C13 C14 SINGLE NONE 36
U8B C16 O17 SINGLE NONE 37
U8B C16 C14 SINGLE NONE 38
U8B C14 N15 SINGLE BEGINWEDGE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
U8B MurckoScaffold S1 scaffold O=C1CNC(=O)C(Cc2ccccc2)N1 InChI=1S/C11H12N2O2/c14-10-7-12-11(15)9(13-10)6-8-4-2-1-3-5-8/h1-5,9H,6-7H2,(H,12,15)(H,13,14) UZOJHXFWJFSFAI-UHFFFAOYSA-N
U8B amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
U8B peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
U8B phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
U8B piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
U8B C4 S1 1
U8B C5 S1 1
U8B C3 S1 1
U8B C55 S1 1
U8B C56 S1 1
U8B C57 S1 1
U8B C1 S1 1
U8B C2 S1 1
U8B C53 S1 1
U8B O54 S1 1
U8B N52 S1 1
U8B N26 S1 1
U8B C27 S1 1
U8B O28 S1 1
U8B C29 S1 1
U8B N9 F1 1
U8B C10 F1 1
U8B O11 F1 1
U8B C12 F1 1
U8B N20 F1 2
U8B C19 F1 2
U8B O25 F1 2
U8B C8 F1 2
U8B N52 F1 3
U8B C53 F1 3
U8B O54 F1 3
U8B C5 F1 3
U8B N26 F1 4
U8B C27 F1 4
U8B O28 F1 4
U8B C29 F1 4
U8B O18 F2 1
U8B C16 F2 1
U8B C14 F2 1
U8B N15 F2 1
U8B O25 F2 2
U8B C19 F2 2
U8B C8 F2 2
U8B N9 F2 2
U8B O23 F2 3
U8B C22 F2 3
U8B C21 F2 3
U8B N20 F2 3
U8B O54 F2 4
U8B C53 F2 4
U8B C5 F2 4
U8B N26 F2 4
U8B O28 F2 5
U8B C27 F2 5
U8B C29 F2 5
U8B N52 F2 5
U8B C3 F3 1
U8B C2 F3 1
U8B C1 F3 1
U8B C57 F3 1
U8B C56 F3 1
U8B C55 F3 1
U8B N52 F4 1
U8B C29 F4 1
U8B C27 F4 1
U8B N26 F4 1
U8B C5 F4 1
U8B C53 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id U8B
_pdbe_chem_comp_rdkit_properties.exactmw 571.141
_pdbe_chem_comp_rdkit_properties.amw 571.634
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.455
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 267.467
_pdbe_chem_comp_rdkit_properties.tpsa 237.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.654
_pdbe_chem_comp_rdkit_properties.CrippenMR 137.579
_pdbe_chem_comp_rdkit_properties.chi0v 19.360
_pdbe_chem_comp_rdkit_properties.chi1v 10.187
_pdbe_chem_comp_rdkit_properties.chi2v 4.780
_pdbe_chem_comp_rdkit_properties.chi3v 4.780
_pdbe_chem_comp_rdkit_properties.chi4v 2.855
_pdbe_chem_comp_rdkit_properties.chi0n 46.727
_pdbe_chem_comp_rdkit_properties.chi1n 22.778
_pdbe_chem_comp_rdkit_properties.chi2n 3.472
_pdbe_chem_comp_rdkit_properties.chi3n 3.472
_pdbe_chem_comp_rdkit_properties.chi4n 1.934
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.340
_pdbe_chem_comp_rdkit_properties.kappa1 9.393
_pdbe_chem_comp_rdkit_properties.kappa2 13.454
_pdbe_chem_comp_rdkit_properties.kappa3 8.338
_pdbe_chem_comp_rdkit_properties.Phi 3.325
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
U8B UniChem PDBe U8B
U8B UniChem PubChem 155907526
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
U8B C4 -3.462 -1.396 0.221 ETKDGv3 1
U8B C5 -2.251 -1.002 -0.682 ETKDGv3 2
U8B C7 -1.299 0.846 1.273 ETKDGv3 3
U8B C8 0.066 1.536 1.417 ETKDGv3 4
U8B C10 2.459 1.175 0.664 ETKDGv3 5
U8B C13 3.639 -0.421 -0.849 ETKDGv3 6
U8B C21 0.558 3.674 4.650 ETKDGv3 7
U8B C22 2.027 3.560 4.906 ETKDGv3 8
U8B O18 6.551 0.062 -2.071 ETKDGv3 9
U8B C16 6.154 -0.572 -1.056 ETKDGv3 10
U8B O17 6.894 -0.522 0.122 ETKDGv3 11
U8B C14 4.858 -1.335 -1.113 ETKDGv3 12
U8B N15 4.894 -2.494 -0.216 ETKDGv3 13
U8B C12 3.623 0.236 0.539 ETKDGv3 14
U8B O11 2.641 2.413 0.507 ETKDGv3 15
U8B N9 1.148 0.666 0.945 ETKDGv3 16
U8B C19 0.309 1.896 2.859 ETKDGv3 17
U8B O25 0.545 0.982 3.697 ETKDGv3 18
U8B N20 0.252 3.266 3.282 ETKDGv3 19
U8B O23 2.817 4.417 4.427 ETKDGv3 20
U8B O24 2.523 2.490 5.642 ETKDGv3 21
U8B S6 -1.799 0.779 -0.492 ETKDGv3 22
U8B C3 -4.751 -0.666 -0.092 ETKDGv3 23
U8B C55 -5.677 -1.220 -0.899 ETKDGv3 24
U8B C56 -6.932 -0.502 -1.202 ETKDGv3 25
U8B C57 -7.164 0.701 -0.663 ETKDGv3 26
U8B C1 -6.168 1.307 0.242 ETKDGv3 27
U8B C2 -5.028 0.660 0.517 ETKDGv3 28
U8B C53 -1.050 -1.869 -0.358 ETKDGv3 29
U8B O54 -0.914 -2.384 0.785 ETKDGv3 30
U8B N52 -0.045 -2.111 -1.350 ETKDGv3 31
U8B N26 -2.599 -1.214 -2.095 ETKDGv3 32
U8B C27 -1.612 -1.462 -3.105 ETKDGv3 33
U8B O28 -1.967 -1.470 -4.316 ETKDGv3 34
U8B C29 -0.153 -1.634 -2.734 ETKDGv3 35
U8B C50 0.549 -2.659 -3.657 ETKDGv3 36
U8B O51 0.546 -2.246 -5.000 ETKDGv3 37
U8B S30 0.687 -0.013 -2.851 ETKDGv3 38
U8B H1 -3.222 -1.225 1.290 ETKDGv3 39
U8B H2 -3.634 -2.492 0.127 ETKDGv3 40
U8B H3 -2.065 1.448 1.806 ETKDGv3 41
U8B H4 -1.269 -0.147 1.758 ETKDGv3 42
U8B H5 0.051 2.465 0.804 ETKDGv3 43
U8B H6 2.715 -1.025 -0.970 ETKDGv3 44
U8B H7 3.619 0.373 -1.628 ETKDGv3 45
U8B H8 0.246 4.730 4.800 ETKDGv3 46
U8B H9 -0.011 3.046 5.370 ETKDGv3 47
U8B H10 7.758 0.006 0.171 ETKDGv3 48
U8B H11 4.752 -1.725 -2.151 ETKDGv3 49
U8B H12 3.986 -3.009 -0.291 ETKDGv3 50
U8B H13 4.999 -2.183 0.776 ETKDGv3 51
U8B H15 4.564 0.801 0.709 ETKDGv3 52
U8B H16 3.535 -0.536 1.331 ETKDGv3 53
U8B H17 1.025 -0.371 0.992 ETKDGv3 54
U8B H18 -0.018 4.003 2.593 ETKDGv3 55
U8B H19 3.517 2.392 5.810 ETKDGv3 56
U8B H20 -5.511 -2.192 -1.346 ETKDGv3 57
U8B H21 -7.663 -0.951 -1.862 ETKDGv3 58
U8B H22 -8.083 1.228 -0.883 ETKDGv3 59
U8B H23 -6.366 2.273 0.690 ETKDGv3 60
U8B H24 -4.318 1.107 1.198 ETKDGv3 61
U8B H25 0.828 -2.598 -1.045 ETKDGv3 62
U8B H26 -3.547 -0.942 -2.437 ETKDGv3 63
U8B H27 0.018 -3.634 -3.589 ETKDGv3 64
U8B H28 1.594 -2.835 -3.308 ETKDGv3 65
U8B H29 1.392 -1.750 -5.154 ETKDGv3 66
U8B H30 0.238 0.268 -4.155 ETKDGv3 67
#