data_U9W
#
_chem_comp.id U9W
_chem_comp.name ~{N}-(4-chlorophenyl)-4-methyl-piperidine-1-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H17 Cl N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-09
_chem_comp.pdbx_modified_date 2022-02-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 252.740
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code U9W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7NGG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U9W C4 C1 C 0 1 N N N N N N -11.574 -28.087 4.125 -2.768 1.292 0.312 C4 U9W 1
U9W C5 C2 C 0 1 N N N N N N -12.530 -28.015 1.830 -0.906 -0.297 0.324 C5 U9W 2
U9W C6 C3 C 0 1 Y N N N N N -14.797 -28.999 1.686 1.319 0.487 0.010 C6 U9W 3
U9W C11 C4 C 0 1 Y N N N N N -14.754 -29.363 0.341 1.795 -0.716 -0.495 C11 U9W 4
U9W C7 C5 C 0 1 Y N N N N N -15.921 -29.320 2.427 2.213 1.458 0.442 C7 U9W 5
U9W C8 C6 C 0 1 Y N N N N N -16.991 -29.974 1.847 3.572 1.223 0.373 C8 U9W 6
U9W C9 C7 C 0 1 Y N N N N N -16.923 -30.334 0.523 4.044 0.021 -0.126 C9 U9W 7
U9W C10 C8 C 0 1 Y N N N N N -15.820 -30.032 -0.231 3.155 -0.946 -0.562 C10 U9W 8
U9W C12 C9 C 0 1 N N N N N N -10.307 -27.151 2.167 -3.113 -1.119 0.992 C12 U9W 9
U9W C13 C10 C 0 1 N N N N N N -9.044 -27.566 2.865 -4.305 -1.204 0.034 C13 U9W 10
U9W N1 N1 N 0 1 N N N N N N -11.490 -27.861 2.671 -2.214 -0.050 0.535 N1 U9W 11
U9W N2 N2 N 0 1 N N N N N N -13.730 -28.374 2.369 -0.059 0.723 0.079 N2 U9W 12
U9W C3 C11 C 0 1 N N N N N N -10.241 -28.448 4.739 -3.964 1.180 -0.639 C3 U9W 13
U9W C1 C12 C 0 1 N N N N N N -7.937 -27.356 5.129 -6.180 0.082 -1.003 C1 U9W 14
U9W C2 C13 C 0 1 N N N N N N -9.234 -27.396 4.345 -4.967 0.171 -0.073 C2 U9W 15
U9W O1 O1 O 0 1 N N N N N N -12.417 -27.813 0.609 -0.489 -1.439 0.356 O1 U9W 16
U9W CL1 CL1 CL 0 0 N N N N N N -18.222 -31.204 -0.236 5.753 -0.271 -0.212 CL1 U9W 17
U9W H1 H1 H 0 1 N N N N N N -11.944 -27.168 4.603 -3.095 1.715 1.262 H1 U9W 18
U9W H2 H2 H 0 1 N N N N N N -12.281 -28.908 4.313 -2.008 1.934 -0.132 H2 U9W 19
U9W H3 H3 H 0 1 N N N N N N -13.886 -29.122 -0.255 1.102 -1.471 -0.834 H3 U9W 20
U9W H4 H4 H 0 1 N N N N N N -15.962 -29.056 3.473 1.846 2.396 0.831 H4 U9W 21
U9W H5 H5 H 0 1 N N N N N N -17.872 -30.200 2.429 4.268 1.978 0.708 H5 U9W 22
U9W H6 H6 H 0 1 N N N N N N -15.783 -30.316 -1.272 3.525 -1.881 -0.954 H6 U9W 23
U9W H7 H7 H 0 1 N N N N N N -10.201 -27.361 1.092 -3.467 -0.893 1.997 H7 U9W 24
U9W H8 H8 H 0 1 N N N N N N -10.454 -26.071 2.317 -2.579 -2.069 0.996 H8 U9W 25
U9W H9 H9 H 0 1 N N N N N N -8.825 -28.620 2.639 -3.959 -1.519 -0.951 H9 U9W 26
U9W H10 H10 H 0 1 N N N N N N -8.209 -26.937 2.524 -5.027 -1.927 0.414 H10 U9W 27
U9W H11 H11 H 0 1 N N N N N N -13.868 -28.176 3.340 -0.405 1.620 -0.051 H11 U9W 28
U9W H12 H12 H 0 1 N N N N N N -10.334 -28.482 5.835 -4.444 2.154 -0.737 H12 U9W 29
U9W H13 H13 H 0 1 N N N N N N -9.915 -29.431 4.368 -3.621 0.843 -1.617 H13 U9W 30
U9W H14 H14 H 0 1 N N N N N N -8.159 -27.230 6.199 -6.894 -0.635 -0.600 H14 U9W 31
U9W H15 H15 H 0 1 N N N N N N -7.387 -28.297 4.977 -6.651 1.062 -1.079 H15 U9W 32
U9W H16 H16 H 0 1 N N N N N N -7.324 -26.512 4.780 -5.856 -0.244 -1.992 H16 U9W 33
U9W H17 H17 H 0 1 N N N N N N -9.721 -26.421 4.493 -5.291 0.497 0.915 H17 U9W 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U9W CL1 C9 SING N N 1
U9W C10 C11 DOUB Y N 2
U9W C10 C9 SING Y N 3
U9W C11 C6 SING Y N 4
U9W C9 C8 DOUB Y N 5
U9W O1 C5 DOUB N N 6
U9W C6 N2 SING N N 7
U9W C6 C7 DOUB Y N 8
U9W C5 N2 SING N N 9
U9W C5 N1 SING N N 10
U9W C8 C7 SING Y N 11
U9W C12 N1 SING N N 12
U9W C12 C13 SING N N 13
U9W N1 C4 SING N N 14
U9W C13 C2 SING N N 15
U9W C4 C3 SING N N 16
U9W C2 C3 SING N N 17
U9W C2 C1 SING N N 18
U9W C4 H1 SING N N 19
U9W C4 H2 SING N N 20
U9W C11 H3 SING N N 21
U9W C7 H4 SING N N 22
U9W C8 H5 SING N N 23
U9W C10 H6 SING N N 24
U9W C12 H7 SING N N 25
U9W C12 H8 SING N N 26
U9W C13 H9 SING N N 27
U9W C13 H10 SING N N 28
U9W N2 H11 SING N N 29
U9W C3 H12 SING N N 30
U9W C3 H13 SING N N 31
U9W C1 H14 SING N N 32
U9W C1 H15 SING N N 33
U9W C1 H16 SING N N 34
U9W C2 H17 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U9W InChI InChI 1.03 InChI=1S/C13H17ClN2O/c1-10-6-8-16(9-7-10)13(17)15-12-4-2-11(14)3-5-12/h2-5,10H,6-9H2,1H3,(H,15,17)
U9W InChIKey InChI 1.03 WMWBLCFXKIUSDK-UHFFFAOYSA-N
U9W SMILES_CANONICAL CACTVS 3.385 CC1CCN(CC1)C(=O)Nc2ccc(Cl)cc2
U9W SMILES CACTVS 3.385 CC1CCN(CC1)C(=O)Nc2ccc(Cl)cc2
U9W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1CCN(CC1)C(=O)Nc2ccc(cc2)Cl
U9W SMILES "OpenEye OEToolkits" 2.0.7 CC1CCN(CC1)C(=O)Nc2ccc(cc2)Cl
#
_pdbx_chem_comp_identifier.comp_id U9W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier ~{N}-(4-chlorophenyl)-4-methyl-piperidine-1-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U9W 'Create component' 2021-02-09 PDBE
U9W 'Initial release' 2022-02-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
U9W C4 C 6.897 2.625 1
U9W C5 C 5.598 0.375 2
U9W C6 C 4.299 -1.875 3
U9W C11 C 3.000 -2.625 4
U9W C7 C 5.598 -2.625 5
U9W C8 C 5.598 -4.125 6
U9W C9 C 4.299 -4.875 7
U9W C10 C 3.000 -4.125 8
U9W C12 C 4.299 2.625 9
U9W C13 C 4.299 4.125 10
U9W N1 N 5.598 1.875 11
U9W N2 N 4.299 -0.375 12
U9W C3 C 6.897 4.125 13
U9W C1 C 5.598 6.375 14
U9W C2 C 5.598 4.875 15
U9W O1 O 6.897 -0.375 16
U9W CL1 Cl 4.299 -6.375 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
U9W CL1 C9 SINGLE NONE 1
U9W C10 C11 DOUBLE NONE 2
U9W C10 C9 SINGLE NONE 3
U9W C11 C6 SINGLE NONE 4
U9W C9 C8 DOUBLE NONE 5
U9W O1 C5 DOUBLE NONE 6
U9W C6 N2 SINGLE NONE 7
U9W C6 C7 DOUBLE NONE 8
U9W C5 N2 SINGLE NONE 9
U9W C5 N1 SINGLE NONE 10
U9W C8 C7 SINGLE NONE 11
U9W C12 N1 SINGLE NONE 12
U9W C12 C13 SINGLE NONE 13
U9W N1 C4 SINGLE NONE 14
U9W C13 C2 SINGLE NONE 15
U9W C4 C3 SINGLE NONE 16
U9W C2 C3 SINGLE NONE 17
U9W C2 C1 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
U9W MurckoScaffold S1 scaffold O=C(Nc1ccccc1)N1CCCCC1 InChI=1S/C12H16N2O/c15-12(14-9-5-2-6-10-14)13-11-7-3-1-4-8-11/h1,3-4,7-8H,2,5-6,9-10H2,(H,13,15) UICIJOHWFFTRLI-UHFFFAOYSA-N
U9W phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
U9W C4 S1 1
U9W C5 S1 1
U9W C6 S1 1
U9W C11 S1 1
U9W C7 S1 1
U9W C8 S1 1
U9W C9 S1 1
U9W C10 S1 1
U9W C12 S1 1
U9W C13 S1 1
U9W N1 S1 1
U9W N2 S1 1
U9W C3 S1 1
U9W C2 S1 1
U9W O1 S1 1
U9W C6 F1 1
U9W C11 F1 1
U9W C10 F1 1
U9W C9 F1 1
U9W C8 F1 1
U9W C7 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id U9W
_pdbe_chem_comp_rdkit_properties.exactmw 252.103
_pdbe_chem_comp_rdkit_properties.amw 252.745
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.462
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.697
_pdbe_chem_comp_rdkit_properties.tpsa 32.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.223
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.618
_pdbe_chem_comp_rdkit_properties.chi0v 8.937
_pdbe_chem_comp_rdkit_properties.chi1v 4.639
_pdbe_chem_comp_rdkit_properties.chi2v 1.754
_pdbe_chem_comp_rdkit_properties.chi3v 1.754
_pdbe_chem_comp_rdkit_properties.chi4v 0.965
_pdbe_chem_comp_rdkit_properties.chi0n 25.181
_pdbe_chem_comp_rdkit_properties.chi1n 12.708
_pdbe_chem_comp_rdkit_properties.chi2n 1.565
_pdbe_chem_comp_rdkit_properties.chi3n 1.565
_pdbe_chem_comp_rdkit_properties.chi4n 0.871
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.220
_pdbe_chem_comp_rdkit_properties.kappa1 3.021
_pdbe_chem_comp_rdkit_properties.kappa2 5.408
_pdbe_chem_comp_rdkit_properties.kappa3 3.366
_pdbe_chem_comp_rdkit_properties.Phi 0.961
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
U9W UniChem PDBe U9W
U9W UniChem ZINC ZINC000000392867
U9W UniChem eMolecules 1067523
U9W UniChem SureChEMBL SCHEMBL11837576
U9W UniChem PubChem 853590
U9W UniChem Mcule MCULE-7000132408
U9W UniChem 'EPA CompTox Dashboard' DTXSID90357454
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
U9W C4 -1.679 1.355 0.537 ETKDGv3 1
U9W C5 0.574 0.255 0.491 ETKDGv3 2
U9W C6 2.997 -0.026 -0.225 ETKDGv3 3
U9W C11 3.890 -1.061 -0.800 ETKDGv3 4
U9W C7 3.539 1.007 0.448 ETKDGv3 5
U9W C8 5.001 1.082 0.651 ETKDGv3 6
U9W C9 5.799 0.132 0.145 ETKDGv3 7
U9W C10 5.215 -0.989 -0.620 ETKDGv3 8
U9W C12 -1.326 -0.711 -0.871 ETKDGv3 9
U9W C13 -2.736 -1.191 -0.511 ETKDGv3 10
U9W N1 -0.823 0.228 0.140 ETKDGv3 11
U9W N2 1.583 -0.110 -0.470 ETKDGv3 12
U9W C3 -3.080 0.863 0.907 ETKDGv3 13
U9W C1 -5.070 -0.496 0.156 ETKDGv3 14
U9W C2 -3.669 -0.002 -0.220 ETKDGv3 15
U9W O1 0.907 0.590 1.660 ETKDGv3 16
U9W CL1 7.535 0.218 0.380 ETKDGv3 17
U9W H1 -1.746 2.076 -0.306 ETKDGv3 18
U9W H2 -1.252 1.893 1.411 ETKDGv3 19
U9W H3 3.469 -1.884 -1.364 ETKDGv3 20
U9W H4 2.923 1.814 0.824 ETKDGv3 21
U9W H5 5.421 1.911 1.205 ETKDGv3 22
U9W H6 5.860 -1.752 -1.039 ETKDGv3 23
U9W H7 -0.672 -1.608 -0.932 ETKDGv3 24
U9W H8 -1.338 -0.212 -1.865 ETKDGv3 25
U9W H9 -2.677 -1.852 0.382 ETKDGv3 26
U9W H10 -3.141 -1.789 -1.356 ETKDGv3 27
U9W H11 1.288 -0.523 -1.382 ETKDGv3 28
U9W H12 -3.023 0.275 1.849 ETKDGv3 29
U9W H13 -3.735 1.744 1.088 ETKDGv3 30
U9W H14 -5.743 0.368 0.338 ETKDGv3 31
U9W H15 -5.034 -1.122 1.073 ETKDGv3 32
U9W H16 -5.497 -1.099 -0.673 ETKDGv3 33
U9W H17 -3.760 0.617 -1.140 ETKDGv3 34
#