data_UA8
#
_chem_comp.id UA8
_chem_comp.name ~{N}-cycloheptyl-4-methyl-piperidine-1-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H26 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-09
_chem_comp.pdbx_modified_date 2022-02-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 238.369
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UA8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7NGN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UA8 C4 C1 C 0 1 N N N N N N -10.557 -26.803 2.183 -2.684 0.995 -1.146 C4 UA8 1
UA8 C14 C2 C 0 1 N N N N N N -10.059 -28.209 4.661 -3.331 -1.172 0.740 C14 UA8 2
UA8 C5 C3 C 0 1 N N N N N N -12.778 -27.943 2.045 -0.407 0.356 -0.515 C5 UA8 3
UA8 C6 C4 C 0 1 N N N N N N -15.039 -28.530 1.973 1.922 -0.243 -0.120 C6 UA8 4
UA8 C11 C5 C 0 1 N N N N N N -16.551 -30.381 2.813 4.116 -1.255 -0.731 C11 UA8 5
UA8 C7 C6 C 0 1 N N N N N N -14.919 -29.484 0.789 2.273 0.381 1.203 C7 UA8 6
UA8 C8 C7 C 0 1 N N N N N N -16.183 -29.572 0.007 3.372 1.453 1.076 C8 UA8 7
UA8 C9 C8 C 0 1 N N N N N N -17.019 -30.734 0.363 4.505 1.036 0.118 C9 UA8 8
UA8 C10 C9 C 0 1 N N N N N N -17.580 -30.626 1.728 4.902 -0.405 0.289 C10 UA8 9
UA8 C12 C10 C 0 1 N N N N N N -16.114 -28.964 2.962 2.756 -1.530 -0.292 C12 UA8 10
UA8 C13 C11 C 0 1 N N N N N N -11.485 -27.990 4.187 -2.176 -1.317 -0.255 C13 UA8 11
UA8 N1 N1 N 0 1 N N N N N N -11.641 -27.625 2.751 -1.707 0.023 -0.634 N1 UA8 12
UA8 N2 N2 N 0 1 N N N N N N -13.760 -28.378 2.657 0.495 -0.575 -0.145 N2 UA8 13
UA8 C3 C12 C 0 1 N N N N N N -9.187 -27.206 2.669 -3.834 1.113 -0.140 C3 UA8 14
UA8 C1 C13 C 0 1 N N N N N N -7.725 -27.127 4.725 -5.585 -0.158 1.109 C1 UA8 15
UA8 C2 C14 C 0 1 N N N N N N -9.139 -27.109 4.174 -4.414 -0.277 0.132 C2 UA8 16
UA8 O1 O1 O 0 1 N N N N N N -12.938 -27.783 0.796 -0.047 1.495 -0.740 O1 UA8 17
UA8 H1 H1 H 0 1 N N N N N N -10.732 -25.753 2.462 -2.204 1.966 -1.268 H1 UA8 18
UA8 H2 H2 H 0 1 N N N N N N -10.582 -26.901 1.088 -3.072 0.653 -2.105 H2 UA8 19
UA8 H3 H3 H 0 1 N N N N N N -9.698 -29.174 4.276 -3.751 -2.155 0.955 H3 UA8 20
UA8 H4 H4 H 0 1 N N N N N N -10.046 -28.225 5.761 -2.963 -0.724 1.662 H4 UA8 21
UA8 H5 H5 H 0 1 N N N N N N -15.335 -27.548 1.575 2.150 0.451 -0.928 H5 UA8 22
UA8 H6 H6 H 0 1 N N N N N N -16.982 -30.707 3.771 4.079 -0.721 -1.681 H6 UA8 23
UA8 H7 H7 H 0 1 N N N N N N -15.663 -30.989 2.584 4.638 -2.200 -0.877 H7 UA8 24
UA8 H8 H8 H 0 1 N N N N N N -14.665 -30.486 1.166 1.379 0.841 1.624 H8 UA8 25
UA8 H9 H9 H 0 1 N N N N N N -14.117 -29.127 0.126 2.620 -0.399 1.880 H9 UA8 26
UA8 H10 H10 H 0 1 N N N N N N -15.927 -29.642 -1.061 2.923 2.375 0.708 H10 UA8 27
UA8 H11 H11 H 0 1 N N N N N N -16.766 -28.657 0.185 3.797 1.640 2.062 H11 UA8 28
UA8 H12 H12 H 0 1 N N N N N N -17.849 -30.806 -0.356 4.174 1.191 -0.909 H12 UA8 29
UA8 H13 H13 H 0 1 N N N N N N -16.403 -31.644 0.305 5.374 1.666 0.305 H13 UA8 30
UA8 H14 H14 H 0 1 N N N N N N -18.297 -29.792 1.740 4.664 -0.734 1.300 H14 UA8 31
UA8 H15 H15 H 0 1 N N N N N N -18.106 -31.564 1.959 5.972 -0.514 0.108 H15 UA8 32
UA8 H16 H16 H 0 1 N N N N N N -15.719 -28.831 3.980 2.793 -2.056 0.662 H16 UA8 33
UA8 H17 H17 H 0 1 N N N N N N -16.992 -28.317 2.822 2.270 -2.170 -1.028 H17 UA8 34
UA8 H18 H18 H 0 1 N N N N N N -11.921 -27.180 4.791 -1.360 -1.871 0.209 H18 UA8 35
UA8 H19 H19 H 0 1 N N N N N N -12.046 -28.920 4.362 -2.521 -1.849 -1.142 H19 UA8 36
UA8 H20 H20 H 0 1 N N N N N N -13.677 -28.626 3.622 0.200 -1.465 0.105 H20 UA8 37
UA8 H21 H21 H 0 1 N N N N N N -8.979 -28.241 2.361 -3.461 1.541 0.790 H21 UA8 38
UA8 H22 H22 H 0 1 N N N N N N -8.432 -26.535 2.234 -4.611 1.758 -0.552 H22 UA8 39
UA8 H23 H23 H 0 1 N N N N N N -7.757 -27.054 5.822 -6.356 0.479 0.676 H23 UA8 40
UA8 H24 H24 H 0 1 N N N N N N -7.230 -28.066 4.435 -5.998 -1.148 1.304 H24 UA8 41
UA8 H25 H25 H 0 1 N N N N N N -7.162 -26.275 4.317 -5.235 0.280 2.044 H25 UA8 42
UA8 H26 H26 H 0 1 N N N N N N -9.592 -26.148 4.459 -4.764 -0.714 -0.803 H26 UA8 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UA8 C8 C9 SING N N 1
UA8 C8 C7 SING N N 2
UA8 C9 C10 SING N N 3
UA8 C7 C6 SING N N 4
UA8 O1 C5 DOUB N N 5
UA8 C10 C11 SING N N 6
UA8 C6 N2 SING N N 7
UA8 C6 C12 SING N N 8
UA8 C5 N2 SING N N 9
UA8 C5 N1 SING N N 10
UA8 C4 C3 SING N N 11
UA8 C4 N1 SING N N 12
UA8 C3 C2 SING N N 13
UA8 N1 C13 SING N N 14
UA8 C11 C12 SING N N 15
UA8 C2 C14 SING N N 16
UA8 C2 C1 SING N N 17
UA8 C13 C14 SING N N 18
UA8 C4 H1 SING N N 19
UA8 C4 H2 SING N N 20
UA8 C14 H3 SING N N 21
UA8 C14 H4 SING N N 22
UA8 C6 H5 SING N N 23
UA8 C11 H6 SING N N 24
UA8 C11 H7 SING N N 25
UA8 C7 H8 SING N N 26
UA8 C7 H9 SING N N 27
UA8 C8 H10 SING N N 28
UA8 C8 H11 SING N N 29
UA8 C9 H12 SING N N 30
UA8 C9 H13 SING N N 31
UA8 C10 H14 SING N N 32
UA8 C10 H15 SING N N 33
UA8 C12 H16 SING N N 34
UA8 C12 H17 SING N N 35
UA8 C13 H18 SING N N 36
UA8 C13 H19 SING N N 37
UA8 N2 H20 SING N N 38
UA8 C3 H21 SING N N 39
UA8 C3 H22 SING N N 40
UA8 C1 H23 SING N N 41
UA8 C1 H24 SING N N 42
UA8 C1 H25 SING N N 43
UA8 C2 H26 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UA8 InChI InChI 1.03 InChI=1S/C14H26N2O/c1-12-8-10-16(11-9-12)14(17)15-13-6-4-2-3-5-7-13/h12-13H,2-11H2,1H3,(H,15,17)
UA8 InChIKey InChI 1.03 RBBIAFZDUSBCMN-UHFFFAOYSA-N
UA8 SMILES_CANONICAL CACTVS 3.385 CC1CCN(CC1)C(=O)NC2CCCCCC2
UA8 SMILES CACTVS 3.385 CC1CCN(CC1)C(=O)NC2CCCCCC2
UA8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1CCN(CC1)C(=O)NC2CCCCCC2
UA8 SMILES "OpenEye OEToolkits" 2.0.7 CC1CCN(CC1)C(=O)NC2CCCCCC2
#
_pdbx_chem_comp_identifier.comp_id UA8
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier ~{N}-cycloheptyl-4-methyl-piperidine-1-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UA8 'Create component' 2021-02-09 PDBE
UA8 'Initial release' 2022-02-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UA8 C4 C 10.786 -2.142 1
UA8 C14 C 12.286 0.457 2
UA8 C5 C 8.536 -0.843 3
UA8 C6 C 6.286 0.457 4
UA8 C11 C 4.173 2.142 5
UA8 C7 C 5.635 -0.895 6
UA8 C8 C 4.173 -1.229 7
UA8 C9 C 3.000 -0.294 8
UA8 C10 C 3.000 1.206 9
UA8 C12 C 5.635 1.808 10
UA8 C13 C 10.786 0.457 11
UA8 N1 N 10.036 -0.843 12
UA8 N2 N 7.786 0.457 13
UA8 C3 C 12.286 -2.142 14
UA8 C1 C 14.536 -0.843 15
UA8 C2 C 13.036 -0.843 16
UA8 O1 O 7.786 -2.142 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UA8 C8 C9 SINGLE NONE 1
UA8 C8 C7 SINGLE NONE 2
UA8 C9 C10 SINGLE NONE 3
UA8 C7 C6 SINGLE NONE 4
UA8 O1 C5 DOUBLE NONE 5
UA8 C10 C11 SINGLE NONE 6
UA8 C6 N2 SINGLE NONE 7
UA8 C6 C12 SINGLE NONE 8
UA8 C5 N2 SINGLE NONE 9
UA8 C5 N1 SINGLE NONE 10
UA8 C4 C3 SINGLE NONE 11
UA8 C4 N1 SINGLE NONE 12
UA8 C3 C2 SINGLE NONE 13
UA8 N1 C13 SINGLE NONE 14
UA8 C11 C12 SINGLE NONE 15
UA8 C2 C14 SINGLE NONE 16
UA8 C2 C1 SINGLE NONE 17
UA8 C13 C14 SINGLE NONE 18
#
_pdbe_chem_comp_substructure.comp_id UA8
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles O=C(NC1CCCCCC1)N1CCCCC1
_pdbe_chem_comp_substructure.substructure_inchis
InChI=1S/C13H24N2O/c16-13(15-10-6-3-7-11-15)14-12-8-4-1-2-5-9-12/h12H,1-11H2,(H,14,16)
_pdbe_chem_comp_substructure.substructure_inchikeys NURWIWGAWNATFK-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UA8 C4 S1 1
UA8 C14 S1 1
UA8 C5 S1 1
UA8 C6 S1 1
UA8 C11 S1 1
UA8 C7 S1 1
UA8 C8 S1 1
UA8 C9 S1 1
UA8 C10 S1 1
UA8 C12 S1 1
UA8 C13 S1 1
UA8 N1 S1 1
UA8 N2 S1 1
UA8 C3 S1 1
UA8 C2 S1 1
UA8 O1 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UA8
_pdbe_chem_comp_rdkit_properties.exactmw 238.205
_pdbe_chem_comp_rdkit_properties.amw 238.375
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 43
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.929
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 141.530
_pdbe_chem_comp_rdkit_properties.tpsa 32.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.151
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.993
_pdbe_chem_comp_rdkit_properties.chi0v 8.303
_pdbe_chem_comp_rdkit_properties.chi1v 4.322
_pdbe_chem_comp_rdkit_properties.chi2v 1.533
_pdbe_chem_comp_rdkit_properties.chi3v 1.533
_pdbe_chem_comp_rdkit_properties.chi4v 0.855
_pdbe_chem_comp_rdkit_properties.chi0n 34.303
_pdbe_chem_comp_rdkit_properties.chi1n 17.269
_pdbe_chem_comp_rdkit_properties.chi2n 1.533
_pdbe_chem_comp_rdkit_properties.chi3n 1.533
_pdbe_chem_comp_rdkit_properties.chi4n 0.855
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.730
_pdbe_chem_comp_rdkit_properties.kappa1 2.026
_pdbe_chem_comp_rdkit_properties.kappa2 6.270
_pdbe_chem_comp_rdkit_properties.kappa3 3.896
_pdbe_chem_comp_rdkit_properties.Phi 0.747
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UA8 UniChem PDBe UA8
UA8 UniChem PubChem 108987971
UA8 UniChem Mcule MCULE-3496112870
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UA8 C4 3.114 0.183 -1.540 ETKDGv3 1
UA8 C14 3.142 1.894 0.678 ETKDGv3 2
UA8 C5 0.640 -0.207 -1.264 ETKDGv3 3
UA8 C6 -1.823 -0.750 -0.893 ETKDGv3 4
UA8 C11 -3.289 0.976 0.376 ETKDGv3 5
UA8 C7 -2.479 -1.875 -0.059 ETKDGv3 6
UA8 C8 -4.006 -1.971 -0.217 ETKDGv3 7
UA8 C9 -4.749 -1.098 0.808 ETKDGv3 8
UA8 C10 -4.711 0.401 0.487 ETKDGv3 9
UA8 C12 -2.607 0.582 -0.945 ETKDGv3 10
UA8 C13 1.925 0.965 0.571 ETKDGv3 11
UA8 N1 1.888 0.284 -0.734 ETKDGv3 12
UA8 N2 -0.466 -0.500 -0.393 ETKDGv3 13
UA8 C3 4.327 0.000 -0.624 ETKDGv3 14
UA8 C1 5.127 0.666 1.687 ETKDGv3 15
UA8 C2 4.477 1.164 0.389 ETKDGv3 16
UA8 O1 0.522 -0.388 -2.507 ETKDGv3 17
UA8 H1 3.232 1.101 -2.156 ETKDGv3 18
UA8 H2 3.059 -0.694 -2.222 ETKDGv3 19
UA8 H3 3.015 2.712 -0.066 ETKDGv3 20
UA8 H4 3.155 2.375 1.680 ETKDGv3 21
UA8 H5 -1.763 -1.128 -1.938 ETKDGv3 22
UA8 H6 -2.672 0.684 1.253 ETKDGv3 23
UA8 H7 -3.376 2.085 0.398 ETKDGv3 24
UA8 H8 -2.217 -1.769 1.016 ETKDGv3 25
UA8 H9 -2.032 -2.839 -0.386 ETKDGv3 26
UA8 H10 -4.321 -1.723 -1.254 ETKDGv3 27
UA8 H11 -4.303 -3.026 -0.033 ETKDGv3 28
UA8 H12 -4.347 -1.274 1.830 ETKDGv3 29
UA8 H13 -5.814 -1.414 0.826 ETKDGv3 30
UA8 H14 -5.239 0.937 1.306 ETKDGv3 31
UA8 H15 -5.283 0.601 -0.446 ETKDGv3 32
UA8 H16 -1.905 1.395 -1.237 ETKDGv3 33
UA8 H17 -3.358 0.536 -1.764 ETKDGv3 34
UA8 H18 1.956 0.208 1.383 ETKDGv3 35
UA8 H19 1.012 1.588 0.699 ETKDGv3 36
UA8 H20 -0.336 -0.401 0.639 ETKDGv3 37
UA8 H21 4.202 -0.968 -0.089 ETKDGv3 38
UA8 H22 5.248 -0.079 -1.241 ETKDGv3 39
UA8 H23 4.456 -0.049 2.211 ETKDGv3 40
UA8 H24 5.338 1.521 2.363 ETKDGv3 41
UA8 H25 6.089 0.158 1.462 ETKDGv3 42
UA8 H26 5.171 1.913 -0.055 ETKDGv3 43
#