data_UHB
#
_chem_comp.id UHB
_chem_comp.name
2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H27 N9 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-04-18
_chem_comp.pdbx_modified_date 2013-12-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 537.528
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UHB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UHB C01 C01 C 0 1 Y N N N N N -39.107 -13.126 16.137 8.359 -1.777 -1.422 C01 UHB 1
UHB C02 C02 C 0 1 Y N N N N N -40.150 -14.174 16.099 7.274 -1.240 -2.083 C02 UHB 2
UHB C03 C03 C 0 1 Y N N N N N -40.796 -14.507 14.825 6.418 -0.370 -1.433 C03 UHB 3
UHB C04 C04 C 0 1 Y N N N N N -40.420 -13.756 13.577 6.647 -0.030 -0.104 C04 UHB 4
UHB C05 C05 C 0 1 Y N N N N N -39.327 -12.712 13.623 7.732 -0.564 0.565 C05 UHB 5
UHB C06 C06 C 0 1 Y N N N N N -38.697 -12.409 14.878 8.598 -1.443 -0.087 C06 UHB 6
UHB C07 C07 C 0 1 N N N N N N -37.691 -11.382 14.642 9.651 -1.845 0.865 C07 UHB 7
UHB C08 C08 C 0 1 N N N N N N -38.723 -11.843 12.598 8.257 -0.411 1.971 C08 UHB 8
UHB N09 N09 N 0 1 N N N N N N -37.719 -11.044 13.243 9.457 -1.251 2.055 N09 UHB 9
UHB O10 O10 O 0 1 N N N N N N -36.966 -10.897 15.466 10.564 -2.607 0.610 O10 UHB 10
UHB N11 N11 N 0 1 N N N N N N -41.094 -14.120 12.363 5.781 0.851 0.554 N11 UHB 11
UHB C12 C12 C 0 1 N N N N N N -41.547 -13.223 11.309 4.540 1.063 0.071 C12 UHB 12
UHB O13 O13 O 0 1 N N N N N N -41.389 -12.005 11.376 4.139 0.416 -0.874 O13 UHB 13
UHB C14 C14 C 0 1 N N N N N N -42.240 -13.936 10.094 3.653 2.103 0.704 C14 UHB 14
UHB N15 N15 N 0 1 N N N N N N -42.743 -12.951 9.132 2.364 2.140 0.001 N15 UHB 15
UHB C16 C16 C 0 1 N N N N N N -41.603 -12.569 8.290 1.563 3.295 0.430 C16 UHB 16
UHB C17 C17 C 0 1 N N N N N N -41.842 -11.447 7.286 0.313 3.401 -0.451 C17 UHB 17
UHB N18 N18 N 0 1 N N N N N N -42.731 -10.405 7.766 -0.391 2.110 -0.421 N18 UHB 18
UHB C19 C19 C 0 1 N N N N N N -43.960 -10.970 8.192 0.380 0.891 -0.706 C19 UHB 19
UHB C20 C20 C 0 1 N N N N N N -43.753 -11.946 9.324 1.627 0.883 0.184 C20 UHB 20
UHB C21 C21 C 0 1 N N N N N N -42.396 -8.975 7.840 -1.707 2.047 -0.138 C21 UHB 21
UHB C22 C22 C 0 1 N N S N N N -41.070 -8.454 7.373 -2.384 0.708 0.001 C22 UHB 22
UHB C23 C23 C 0 1 N N S N N N -40.011 -8.532 8.456 -2.644 0.089 -1.391 C23 UHB 23
UHB C24 C24 C 0 1 N N R N N N -39.714 -7.150 8.759 -4.014 -0.609 -1.242 C24 UHB 24
UHB C25 C25 C 0 1 N N R N N N -39.986 -6.494 7.476 -4.420 -0.330 0.222 C25 UHB 25
UHB O26 O26 O 0 1 N N N N N N -41.210 -7.078 6.996 -3.696 0.865 0.585 O26 UHB 26
UHB O27 O27 O 0 1 N N N N N N -43.205 -8.157 8.288 -2.347 3.067 0.004 O27 UHB 27
UHB O28 O28 O 0 1 N N N N N N -38.914 -9.245 8.007 -1.628 -0.863 -1.713 O28 UHB 28
UHB O29 O29 O 0 1 N N N N N N -38.364 -6.970 9.272 -3.887 -2.014 -1.468 O29 UHB 29
UHB N30 N30 N 0 1 Y N N N N N -40.095 -5.086 7.518 -5.864 -0.100 0.315 N30 UHB 30
UHB C31 C31 C 0 1 Y N N N N N -39.822 -2.968 6.892 -8.058 -0.376 0.489 C31 UHB 31
UHB C32 C32 C 0 1 Y N N N N N -39.559 -4.250 6.547 -6.834 -1.064 0.433 C32 UHB 32
UHB C33 C33 C 0 1 Y N N N N N -40.699 -4.312 8.452 -6.490 1.111 0.308 C33 UHB 33
UHB N34 N34 N 0 1 Y N N N N N -40.531 -3.001 8.084 -7.777 0.947 0.408 N34 UHB 34
UHB N35 N35 N 0 1 Y N N N N N -38.622 -2.114 4.797 -9.139 -2.454 0.668 N35 UHB 35
UHB C36 C36 C 0 1 Y N N N N N -38.347 -3.459 4.444 -7.965 -3.056 0.612 C36 UHB 36
UHB N37 N37 N 0 1 Y N N N N N -38.819 -4.540 5.313 -6.835 -2.391 0.497 N37 UHB 37
UHB C38 C38 C 0 1 Y N N N N N -39.328 -1.829 5.978 -9.237 -1.130 0.612 C38 UHB 38
UHB N39 N39 N 0 1 N N N N N N -39.576 -0.493 6.313 -10.472 -0.509 0.672 N39 UHB 39
UHB H01 H01 H 0 1 N N N N N N -38.636 -12.873 17.075 9.021 -2.459 -1.935 H01 UHB 40
UHB H02 H02 H 0 1 N N N N N N -40.434 -14.691 17.004 7.092 -1.500 -3.116 H02 UHB 41
UHB H03 H03 H 0 1 N N N N N N -41.540 -15.289 14.783 5.572 0.046 -1.959 H03 UHB 42
UHB H081 H081 H 0 0 N N N N N N -38.264 -12.457 11.809 8.515 0.631 2.162 H081 UHB 43
UHB H082 H082 H 0 0 N N N N N N -39.493 -11.193 12.156 7.510 -0.751 2.689 H082 UHB 44
UHB HN09 HN09 H 0 0 N N N N N N -37.136 -10.366 12.795 10.017 -1.359 2.839 HN09 UHB 45
UHB H14 H14 H 0 1 N N N N N N -41.509 -14.588 9.594 3.488 1.851 1.751 H14 UHB 46
UHB H14A H14A H 0 0 N N N N N N -43.081 -14.542 10.463 4.132 3.079 0.636 H14A UHB 47
UHB H16 H16 H 0 1 N N N N N N -40.787 -12.252 8.956 1.265 3.164 1.470 H16 UHB 48
UHB H16A H16A H 0 0 N N N N N N -41.291 -13.460 7.726 2.155 4.205 0.332 H16A UHB 49
UHB H17 H17 H 0 1 N N N N N N -40.872 -10.989 7.042 -0.340 4.184 -0.065 H17 UHB 50
UHB H17A H17A H 0 0 N N N N N N -42.280 -11.884 6.377 0.605 3.635 -1.474 H17A UHB 51
UHB H19 H19 H 0 1 N N N N N N -44.626 -10.163 8.532 -0.230 0.013 -0.490 H19 UHB 52
UHB H19A H19A H 0 0 N N N N N N -44.424 -11.497 7.345 0.678 0.883 -1.754 H19A UHB 53
UHB H20 H20 H 0 1 N N N N N N -44.709 -12.462 9.498 2.265 0.043 -0.091 H20 UHB 54
UHB H20A H20A H 0 0 N N N N N N -43.481 -11.366 10.219 1.328 0.786 1.228 H20A UHB 55
UHB H22 H22 H 0 1 N N N N N N -40.737 -9.047 6.509 -1.776 0.036 0.606 H22 UHB 56
UHB H23 H23 H 0 1 N N N N N N -40.449 -9.017 9.341 -2.693 0.868 -2.152 H23 UHB 57
UHB H24 H24 H 0 1 N N N N N N -40.433 -6.782 9.506 -4.740 -0.175 -1.929 H24 UHB 58
UHB H25 H25 H 0 1 N N N N N N -39.178 -6.764 6.780 -4.125 -1.162 0.862 H25 UHB 59
UHB HO28 HO28 H 0 0 N N N N N N -38.259 -9.286 8.694 -1.742 -1.283 -2.577 HO28 UHB 60
UHB HO29 HO29 H 0 0 N N N N N N -38.215 -6.050 9.456 -3.575 -2.244 -2.354 HO29 UHB 61
UHB H33 H33 H 0 1 N N N N N N -41.220 -4.664 9.330 -5.991 2.066 0.231 H33 UHB 62
UHB H36 H36 H 0 1 N N N N N N -37.795 -3.685 3.544 -7.931 -4.135 0.661 H36 UHB 63
UHB HN39 HN39 H 0 0 N N N N N N -39.186 0.105 5.612 -10.531 0.459 0.629 HN39 UHB 64
UHB HN3A HN3A H 0 0 N N N N N N -40.563 -0.341 6.369 -11.279 -1.040 0.757 HN3A UHB 65
UHB HN11 HN11 H 0 0 N N N N N N -41.272 -15.095 12.226 6.073 1.309 1.357 HN11 UHB 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UHB C01 C02 DOUB Y N 1
UHB C01 C06 SING Y N 2
UHB C02 C03 SING Y N 3
UHB C03 C04 DOUB Y N 4
UHB C04 C05 SING Y N 5
UHB C04 N11 SING N N 6
UHB C05 C06 DOUB Y N 7
UHB C05 C08 SING N N 8
UHB C06 C07 SING N N 9
UHB C07 N09 SING N N 10
UHB C07 O10 DOUB N N 11
UHB C08 N09 SING N N 12
UHB N11 C12 SING N N 13
UHB C12 O13 DOUB N N 14
UHB C12 C14 SING N N 15
UHB C14 N15 SING N N 16
UHB N15 C16 SING N N 17
UHB N15 C20 SING N N 18
UHB C16 C17 SING N N 19
UHB C17 N18 SING N N 20
UHB N18 C19 SING N N 21
UHB N18 C21 SING N N 22
UHB C19 C20 SING N N 23
UHB C21 C22 SING N N 24
UHB C21 O27 DOUB N N 25
UHB C22 C23 SING N N 26
UHB C22 O26 SING N N 27
UHB C23 C24 SING N N 28
UHB C23 O28 SING N N 29
UHB C24 C25 SING N N 30
UHB C24 O29 SING N N 31
UHB C25 O26 SING N N 32
UHB C25 N30 SING N N 33
UHB N30 C32 SING Y N 34
UHB N30 C33 SING Y N 35
UHB C31 C32 DOUB Y N 36
UHB C31 N34 SING Y N 37
UHB C31 C38 SING Y N 38
UHB C32 N37 SING Y N 39
UHB C33 N34 DOUB Y N 40
UHB N35 C36 SING Y N 41
UHB N35 C38 DOUB Y N 42
UHB C36 N37 DOUB Y N 43
UHB C38 N39 SING N N 44
UHB C01 H01 SING N N 45
UHB C02 H02 SING N N 46
UHB C03 H03 SING N N 47
UHB C08 H081 SING N N 48
UHB C08 H082 SING N N 49
UHB N09 HN09 SING N N 50
UHB C14 H14 SING N N 51
UHB C14 H14A SING N N 52
UHB C16 H16 SING N N 53
UHB C16 H16A SING N N 54
UHB C17 H17 SING N N 55
UHB C17 H17A SING N N 56
UHB C19 H19 SING N N 57
UHB C19 H19A SING N N 58
UHB C20 H20 SING N N 59
UHB C20 H20A SING N N 60
UHB C22 H22 SING N N 61
UHB C23 H23 SING N N 62
UHB C24 H24 SING N N 63
UHB C25 H25 SING N N 64
UHB O28 HO28 SING N N 65
UHB O29 HO29 SING N N 66
UHB C33 H33 SING N N 67
UHB C36 H36 SING N N 68
UHB N39 HN39 SING N N 69
UHB N39 HN3A SING N N 70
UHB N11 HN11 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UHB SMILES ACDLabs 12.01 O=C6C5=CC=C/C(=N/C(=O)CN4CCN(C(=O)C3OC(n2cnc1c(ncnc12)N)C(O)C3O)CC4)C5=CN6
UHB InChI InChI 1.03 InChI=1S/C24H25N9O6/c25-20-16-21(28-10-27-20)33(11-29-16)24-18(36)17(35)19(39-24)23(38)32-6-4-31(5-7-32)9-15(34)30-14-3-1-2-12-13(14)8-26-22(12)37/h1-3,8,10-11,17-19,24,35-36H,4-7,9H2,(H,26,37)(H2,25,27,28)/b30-14-/t17-,18+,19-,24+/m0/s1
UHB InChIKey InChI 1.03 QEUOCRGVJJDDTK-VBFAUCSFSA-N
UHB SMILES_CANONICAL CACTVS 3.370 Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)N4CCN(CC4)CC(=O)Nc5cccc6C(=O)NCc56
UHB SMILES CACTVS 3.370 Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)N4CCN(CC4)CC(=O)Nc5cccc6C(=O)NCc56
UHB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc2c(c(c1)NC(=O)CN3CCN(CC3)C(=O)[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)CNC2=O
UHB SMILES "OpenEye OEToolkits" 1.7.6 c1cc2c(c(c1)NC(=O)CN3CCN(CC3)C(=O)C4C(C(C(O4)n5cnc6c5ncnc6N)O)O)CNC2=O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UHB "SYSTEMATIC NAME" ACDLabs 12.01 "2-(4-{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}piperazin-1-yl)-N-[(4Z)-1-oxo-1,2-dihydro-4H-isoindol-4-ylidene]acetamide (non-preferred name)"
UHB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UHB 'Create component' 2013-04-18 EBI
UHB 'Initial release' 2013-12-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UHB C01 C 8.124 -2.085 1
UHB C02 C 6.825 -1.335 2
UHB C03 C 5.524 -2.082 3
UHB C04 C 5.523 -3.582 4
UHB C05 C 6.820 -4.335 5
UHB C06 C 8.119 -3.586 6
UHB C07 C 9.234 -4.592 7
UHB C08 C 7.129 -5.803 8
UHB N09 N 8.621 -5.960 9
UHB O10 O 10.701 -4.282 10
UHB N11 N 4.222 -4.331 11
UHB C12 C 2.924 -3.578 12
UHB O13 O 2.927 -2.078 13
UHB C14 C 1.624 -4.326 14
UHB N15 N 0.327 -3.574 15
UHB C16 C 0.328 -2.074 16
UHB C17 C -0.968 -1.322 17
UHB N18 N -2.270 -2.069 18
UHB C19 C -2.271 -3.570 19
UHB C20 C -0.974 -4.321 20
UHB C21 C -3.566 -1.318 21
UHB C22 C -3.565 0.183 22
UHB C23 C -2.349 1.062 23
UHB C24 C -2.811 2.489 24
UHB C25 C -4.310 2.492 25
UHB O26 O -4.775 1.066 26
UHB O27 O -4.866 -2.066 27
UHB O28 O -0.924 0.597 28
UHB O29 O -1.926 3.702 29
UHB N30 N -5.190 3.706 30
UHB C31 C -5.935 6.014 31
UHB C32 C -4.722 5.132 32
UHB C33 C -6.689 3.708 33
UHB N34 N -7.152 5.136 34
UHB N35 N -4.403 8.114 35
UHB C36 C -3.190 7.231 36
UHB N37 N -3.354 5.738 37
UHB C38 C -5.775 7.509 38
UHB N39 N -6.987 8.392 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UHB C01 C02 DOUBLE NONE 1
UHB C01 C06 SINGLE NONE 2
UHB C02 C03 SINGLE NONE 3
UHB C03 C04 DOUBLE NONE 4
UHB C04 C05 SINGLE NONE 5
UHB C04 N11 SINGLE NONE 6
UHB C05 C06 DOUBLE NONE 7
UHB C05 C08 SINGLE NONE 8
UHB C06 C07 SINGLE NONE 9
UHB C07 N09 SINGLE NONE 10
UHB C07 O10 DOUBLE NONE 11
UHB C08 N09 SINGLE NONE 12
UHB N11 C12 SINGLE NONE 13
UHB C12 O13 DOUBLE NONE 14
UHB C12 C14 SINGLE NONE 15
UHB C14 N15 SINGLE NONE 16
UHB N15 C16 SINGLE NONE 17
UHB N15 C20 SINGLE NONE 18
UHB C16 C17 SINGLE NONE 19
UHB C17 N18 SINGLE NONE 20
UHB N18 C19 SINGLE NONE 21
UHB N18 C21 SINGLE NONE 22
UHB C19 C20 SINGLE NONE 23
UHB C22 C21 SINGLE BEGINWEDGE 24
UHB C21 O27 DOUBLE NONE 25
UHB C22 C23 SINGLE NONE 26
UHB C22 O26 SINGLE NONE 27
UHB C23 C24 SINGLE NONE 28
UHB C23 O28 SINGLE BEGINDASH 29
UHB C24 C25 SINGLE NONE 30
UHB C24 O29 SINGLE BEGINDASH 31
UHB C25 O26 SINGLE NONE 32
UHB C25 N30 SINGLE BEGINWEDGE 33
UHB N30 C32 SINGLE NONE 34
UHB N30 C33 SINGLE NONE 35
UHB C31 C32 DOUBLE NONE 36
UHB C31 N34 SINGLE NONE 37
UHB C31 C38 SINGLE NONE 38
UHB C32 N37 SINGLE NONE 39
UHB C33 N34 DOUBLE NONE 40
UHB N35 C36 SINGLE NONE 41
UHB N35 C38 DOUBLE NONE 42
UHB C36 N37 DOUBLE NONE 43
UHB C38 N39 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UHB MurckoScaffold S1 scaffold 'O=C(CN1CCN(C(=O)[C@@H]2CC[C@H](n3cnc4cncnc43)O2)CC1)Nc1cccc2c1CNC2=O' InChI=1S/C24H26N8O4/c33-20(29-17-3-1-2-15-16(17)10-26-23(15)34)12-30-6-8-31(9-7-30)24(35)19-4-5-21(36-19)32-14-28-18-11-25-13-27-22(18)32/h1-3,11,13-14,19,21H,4-10,12H2,(H,26,34)(H,29,33)/t19-,21+/m0/s1 NPUKQHZXOGZUFX-PZJWPPBQSA-N
UHB adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
UHB amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
UHB imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
UHB peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
UHB phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
UHB piperazine F6 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
UHB purine F7 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
UHB pyrimidine F8 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
UHB Z85934875 F9 fragment CNC(=O)CN1CCNCC1 InChI=1S/C7H15N3O/c1-8-7(11)6-10-4-2-9-3-5-10/h9H,2-6H2,1H3,(H,8,11) SOTHHBNFPDRYCM-UHFFFAOYSA-N
UHB Z31432964 F10 fragment CN1CCN(C(=O)C2CCCO2)CC1 InChI=1S/C10H18N2O2/c1-11-4-6-12(7-5-11)10(13)9-3-2-8-14-9/h9H,2-8H2,1H3 ZSHARPJAQXGCMB-UHFFFAOYSA-N
UHB Z228585842 F11 fragment CN1CCN(C(=O)CO)CC1 InChI=1S/C7H14N2O2/c1-8-2-4-9(5-3-8)7(11)6-10/h10H,2-6H2,1H3 NXJMRIAKANWEQC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UHB C01 S1 1
UHB C02 S1 1
UHB C03 S1 1
UHB C04 S1 1
UHB C05 S1 1
UHB C06 S1 1
UHB C07 S1 1
UHB C08 S1 1
UHB N09 S1 1
UHB O10 S1 1
UHB N11 S1 1
UHB C12 S1 1
UHB O13 S1 1
UHB C14 S1 1
UHB N15 S1 1
UHB C16 S1 1
UHB C17 S1 1
UHB N18 S1 1
UHB C19 S1 1
UHB C20 S1 1
UHB C21 S1 1
UHB C22 S1 1
UHB C23 S1 1
UHB C24 S1 1
UHB C25 S1 1
UHB O26 S1 1
UHB O27 S1 1
UHB N30 S1 1
UHB C31 S1 1
UHB C32 S1 1
UHB C33 S1 1
UHB N34 S1 1
UHB N35 S1 1
UHB C36 S1 1
UHB N37 S1 1
UHB C38 S1 1
UHB N35 F1 1
UHB C38 F1 1
UHB C31 F1 1
UHB C32 F1 1
UHB N37 F1 1
UHB C36 F1 1
UHB N30 F1 1
UHB C33 F1 1
UHB N34 F1 1
UHB N39 F1 1
UHB N09 F2 1
UHB C07 F2 1
UHB O10 F2 1
UHB C06 F2 1
UHB N11 F2 2
UHB C12 F2 2
UHB O13 F2 2
UHB C14 F2 2
UHB N18 F2 3
UHB C21 F2 3
UHB O27 F2 3
UHB C22 F2 3
UHB C31 F3 1
UHB C32 F3 1
UHB N30 F3 1
UHB C33 F3 1
UHB N34 F3 1
UHB O13 F4 1
UHB C12 F4 1
UHB C14 F4 1
UHB N15 F4 1
UHB C01 F5 1
UHB C02 F5 1
UHB C03 F5 1
UHB C04 F5 1
UHB C05 F5 1
UHB C06 F5 1
UHB N15 F6 1
UHB C16 F6 1
UHB C17 F6 1
UHB N18 F6 1
UHB C19 F6 1
UHB C20 F6 1
UHB N34 F7 1
UHB C33 F7 1
UHB N30 F7 1
UHB C32 F7 1
UHB C31 F7 1
UHB C38 F7 1
UHB N35 F7 1
UHB C36 F7 1
UHB N37 F7 1
UHB C31 F8 1
UHB C32 F8 1
UHB N37 F8 1
UHB C36 F8 1
UHB N35 F8 1
UHB C38 F8 1
UHB C04 F9 1
UHB N11 F9 1
UHB C12 F9 1
UHB O13 F9 1
UHB C14 F9 1
UHB N15 F9 1
UHB C16 F9 1
UHB C17 F9 1
UHB N18 F9 1
UHB C19 F9 1
UHB C20 F9 1
UHB C14 F10 1
UHB N15 F10 1
UHB C16 F10 1
UHB C17 F10 1
UHB N18 F10 1
UHB C19 F10 1
UHB C20 F10 1
UHB C21 F10 1
UHB O27 F10 1
UHB C22 F10 1
UHB C23 F10 1
UHB C24 F10 1
UHB C25 F10 1
UHB O26 F10 1
UHB C14 F11 1
UHB N15 F11 1
UHB C16 F11 1
UHB C17 F11 1
UHB N18 F11 1
UHB C19 F11 1
UHB C20 F11 1
UHB C21 F11 1
UHB O27 F11 1
UHB C22 F11 1
UHB O26 F11 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UHB
_pdbe_chem_comp_rdkit_properties.exactmw 537.208
_pdbe_chem_comp_rdkit_properties.amw 537.537
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 259.461
_pdbe_chem_comp_rdkit_properties.tpsa 201.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.245
_pdbe_chem_comp_rdkit_properties.CrippenMR 130.535
_pdbe_chem_comp_rdkit_properties.chi0v 18.474
_pdbe_chem_comp_rdkit_properties.chi1v 10.151
_pdbe_chem_comp_rdkit_properties.chi2v 4.921
_pdbe_chem_comp_rdkit_properties.chi3v 4.921
_pdbe_chem_comp_rdkit_properties.chi4v 3.197
_pdbe_chem_comp_rdkit_properties.chi0n 45.474
_pdbe_chem_comp_rdkit_properties.chi1n 23.256
_pdbe_chem_comp_rdkit_properties.chi2n 4.921
_pdbe_chem_comp_rdkit_properties.chi3n 4.921
_pdbe_chem_comp_rdkit_properties.chi4n 3.197
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.180
_pdbe_chem_comp_rdkit_properties.kappa1 8.920
_pdbe_chem_comp_rdkit_properties.kappa2 9.848
_pdbe_chem_comp_rdkit_properties.kappa3 4.440
_pdbe_chem_comp_rdkit_properties.Phi 2.252
#
_pdbe_chem_comp_external_mappings.comp_id UHB
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id UHB
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UHB C01 8.329 2.493 -1.360 ETKDGv3 1
UHB C02 7.071 2.927 -1.536 ETKDGv3 2
UHB C03 5.931 2.221 -0.887 ETKDGv3 3
UHB C04 6.147 1.145 -0.096 ETKDGv3 4
UHB C05 7.541 0.671 0.069 ETKDGv3 5
UHB C06 8.545 1.308 -0.517 ETKDGv3 6
UHB C07 9.769 0.638 -0.159 ETKDGv3 7
UHB C08 8.032 -0.499 0.882 ETKDGv3 8
UHB N09 9.480 -0.460 0.690 ETKDGv3 9
UHB O10 10.927 0.962 -0.530 ETKDGv3 10
UHB N11 5.066 0.423 0.518 ETKDGv3 11
UHB C12 3.861 1.036 1.003 ETKDGv3 12
UHB O13 3.791 2.286 1.153 ETKDGv3 13
UHB C14 2.688 0.181 1.379 ETKDGv3 14
UHB N15 2.258 -0.641 0.227 ETKDGv3 15
UHB C16 1.430 -1.793 0.631 ETKDGv3 16
UHB C17 0.030 -1.372 1.093 ETKDGv3 17
UHB N18 -0.606 -0.506 0.091 ETKDGv3 18
UHB C19 0.185 0.603 -0.460 ETKDGv3 19
UHB C20 1.598 0.139 -0.842 ETKDGv3 20
UHB C21 -2.041 -0.502 -0.094 ETKDGv3 21
UHB C22 -2.978 -1.182 0.880 ETKDGv3 22
UHB C23 -3.255 -2.627 0.462 ETKDGv3 23
UHB C24 -4.593 -2.509 -0.227 ETKDGv3 24
UHB C25 -5.231 -1.304 0.462 ETKDGv3 25
UHB O26 -4.197 -0.465 0.933 ETKDGv3 26
UHB O27 -2.535 0.055 -1.112 ETKDGv3 27
UHB O28 -3.336 -3.436 1.609 ETKDGv3 28
UHB O29 -5.370 -3.681 -0.146 ETKDGv3 29
UHB N30 -6.091 -0.564 -0.463 ETKDGv3 30
UHB C31 -7.666 0.951 -0.933 ETKDGv3 31
UHB C32 -6.536 0.773 -0.305 ETKDGv3 32
UHB C33 -7.173 -1.118 -1.231 ETKDGv3 33
UHB N34 -8.104 -0.260 -1.534 ETKDGv3 34
UHB N35 -7.841 3.156 -0.053 ETKDGv3 35
UHB C36 -6.586 2.933 0.637 ETKDGv3 36
UHB N37 -5.962 1.789 0.527 ETKDGv3 37
UHB C38 -8.378 2.228 -0.801 ETKDGv3 38
UHB N39 -9.622 2.458 -1.460 ETKDGv3 39
UHB H01 9.162 3.001 -1.829 ETKDGv3 40
UHB H02 6.880 3.792 -2.157 ETKDGv3 41
UHB H03 4.928 2.570 -1.088 ETKDGv3 42
UHB H081 7.782 -0.364 1.955 ETKDGv3 43
UHB H082 7.618 -1.452 0.489 ETKDGv3 44
UHB HN09 10.176 -1.121 1.101 ETKDGv3 45
UHB H14 3.018 -0.472 2.216 ETKDGv3 46
UHB H14A 1.859 0.812 1.763 ETKDGv3 47
UHB H16 1.330 -2.487 -0.233 ETKDGv3 48
UHB H16A 1.933 -2.369 1.439 ETKDGv3 49
UHB H17 -0.558 -2.300 1.246 ETKDGv3 50
UHB H17A 0.089 -0.835 2.064 ETKDGv3 51
UHB H19 0.235 1.425 0.285 ETKDGv3 52
UHB H19A -0.292 1.018 -1.373 ETKDGv3 53
UHB H20 2.214 1.021 -1.120 ETKDGv3 54
UHB H20A 1.530 -0.493 -1.755 ETKDGv3 55
UHB H22 -2.528 -1.151 1.896 ETKDGv3 56
UHB H23 -2.478 -3.021 -0.238 ETKDGv3 57
UHB H24 -4.415 -2.275 -1.301 ETKDGv3 58
UHB H25 -5.838 -1.622 1.338 ETKDGv3 59
UHB HO28 -3.190 -4.372 1.312 ETKDGv3 60
UHB HO29 -5.659 -3.807 0.795 ETKDGv3 61
UHB H33 -7.230 -2.159 -1.517 ETKDGv3 62
UHB H36 -6.169 3.715 1.257 ETKDGv3 63
UHB HN39 -10.052 1.718 -2.058 ETKDGv3 64
UHB HN3A -10.116 3.371 -1.353 ETKDGv3 65
UHB HN11 5.189 -0.601 0.682 ETKDGv3 66
#