data_UJL
#
_chem_comp.id UJL
_chem_comp.name "1-[(7~{S})-5,7-dihydro-4~{H}-thieno[2,3-c]pyran-7-yl]-~{N}-methyl-methanamine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H13 N O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Ulotaront; SEP-363856 ; SEP-856"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-06-07
_chem_comp.pdbx_modified_date 2023-11-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 183.271
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UJL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8JLK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UJL C1 C1 C 0 1 N N N N N N 97.521 65.490 90.407 4.177 -1.011 0.472 C1 UJL 1
UJL C2 C2 C 0 1 N N N N N N 96.574 64.957 92.587 1.809 -0.615 0.155 C2 UJL 2
UJL C3 C3 C 0 1 N N S N N N 96.827 64.220 93.889 0.787 0.310 -0.509 C3 UJL 3
UJL C4 C4 C 0 1 N N N N N N 97.172 62.022 94.697 -0.121 2.525 -0.382 C4 UJL 4
UJL C5 C5 C 0 1 N N N N N N 95.793 61.842 95.294 -1.411 2.143 0.351 C5 UJL 5
UJL C6 C6 C 0 1 Y N N N N N 95.133 63.171 95.440 -1.617 0.642 0.191 C6 UJL 6
UJL C7 C7 C 0 1 Y N N N N N 93.969 63.494 96.196 -2.816 -0.020 0.423 C7 UJL 7
UJL C8 C8 C 0 1 Y N N N N N 93.675 64.816 96.155 -2.793 -1.336 0.227 C8 UJL 8
UJL C9 C9 C 0 1 Y N N N N N 95.637 64.251 94.793 -0.614 -0.171 -0.198 C9 UJL 9
UJL N1 N1 N 0 1 N N N N N N 97.735 64.836 91.705 3.167 -0.145 -0.150 N1 UJL 10
UJL O1 O1 O 0 1 N N N N N N 97.136 62.866 93.550 0.931 1.638 0.007 O1 UJL 11
UJL S1 S1 S 0 1 Y N N N N N 94.756 65.693 95.153 -1.184 -1.829 -0.282 S1 UJL 12
UJL H1 H1 H 0 1 N N N N N N 98.419 65.371 89.783 4.041 -1.008 1.554 H1 UJL 13
UJL H2 H2 H 0 1 N N N N N N 96.660 65.028 89.901 4.066 -2.027 0.095 H2 UJL 14
UJL H3 H3 H 0 1 N N N N N N 97.323 66.561 90.564 5.173 -0.640 0.230 H3 UJL 15
UJL H4 H4 H 0 1 N N N N N N 96.389 66.020 92.801 1.657 -0.610 1.234 H4 UJL 16
UJL H5 H5 H 0 1 N N N N N N 95.693 64.525 92.090 1.682 -1.629 -0.225 H5 UJL 17
UJL H6 H6 H 0 1 N N N N N N 97.682 64.686 94.401 0.943 0.315 -1.588 H6 UJL 18
UJL H7 H7 H 0 1 N N N N N N 97.567 61.038 94.405 -0.279 2.451 -1.458 H7 UJL 19
UJL H8 H8 H 0 1 N N N N N N 97.833 62.473 95.452 0.153 3.549 -0.125 H8 UJL 20
UJL H9 H9 H 0 1 N N N N N N 95.188 61.204 94.633 -1.321 2.392 1.409 H9 UJL 21
UJL H10 H10 H 0 1 N N N N N N 95.881 61.367 96.282 -2.254 2.679 -0.083 H10 UJL 22
UJL H11 H11 H 0 1 N N N N N N 93.386 62.766 96.741 -3.708 0.499 0.740 H11 UJL 23
UJL H12 H12 H 0 1 N N N N N N 92.853 65.266 96.692 -3.634 -2.000 0.360 H12 UJL 24
UJL H13 H13 H 0 1 N N N N N N 97.921 63.866 91.549 3.289 0.816 0.134 H13 UJL 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UJL C1 N1 SING N N 1
UJL N1 C2 SING N N 2
UJL C2 C3 SING N N 3
UJL O1 C3 SING N N 4
UJL O1 C4 SING N N 5
UJL C3 C9 SING N N 6
UJL C4 C5 SING N N 7
UJL C9 S1 SING Y N 8
UJL C9 C6 DOUB Y N 9
UJL S1 C8 SING Y N 10
UJL C5 C6 SING N N 11
UJL C6 C7 SING Y N 12
UJL C8 C7 DOUB Y N 13
UJL C1 H1 SING N N 14
UJL C1 H2 SING N N 15
UJL C1 H3 SING N N 16
UJL C2 H4 SING N N 17
UJL C2 H5 SING N N 18
UJL C3 H6 SING N N 19
UJL C4 H7 SING N N 20
UJL C4 H8 SING N N 21
UJL C5 H9 SING N N 22
UJL C5 H10 SING N N 23
UJL C7 H11 SING N N 24
UJL C8 H12 SING N N 25
UJL N1 H13 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UJL InChI InChI 1.06 "InChI=1S/C9H13NOS/c1-10-6-8-9-7(2-4-11-8)3-5-12-9/h3,5,8,10H,2,4,6H2,1H3/t8-/m0/s1"
UJL InChIKey InChI 1.06 ABDDQTDRAHXHOC-QMMMGPOBSA-N
UJL SMILES_CANONICAL CACTVS 3.385 "CNC[C@@H]1OCCc2ccsc12"
UJL SMILES CACTVS 3.385 "CNC[CH]1OCCc2ccsc12"
UJL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC[C@H]1c2c(ccs2)CCO1"
UJL SMILES "OpenEye OEToolkits" 2.0.7 "CNCC1c2c(ccs2)CCO1"
#
_pdbx_chem_comp_identifier.comp_id UJL
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "1-[(7~{S})-5,7-dihydro-4~{H}-thieno[2,3-c]pyran-7-yl]-~{N}-methyl-methanamine"
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 UJL Ulotaront PUBCHEM ?
2 UJL "SEP-363856 " PUBCHEM ?
3 UJL SEP-856 PUBCHEM ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UJL 'Create component' 2023-06-07 PDBJ
UJL 'Initial release' 2023-11-15 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id UJL
_pdbe_chem_comp_drugbank_details.drugbank_id DB15665
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name SEP-363856
_pdbe_chem_comp_drugbank_details.description
'SEP-363856 is a novel psychotropic drug being investigated for the treatment of schizophrenia.  Unlike other drugs used for this condition, SEP-363856 does not bind to the dopamine D2 receptors, but exerts actions on the trace amine–associated receptor 1 (TAAR1) and 5-hydroxytryptamine type 1A (5-HT1A).[A193506]   SEP-363856 was developed by Sunovion pharmaceuticals.[L12891] An initial clinical study has shown this drug may be effective against both positive and negative symptoms of schizophrenia. Negative symptoms of schizophrenia are more difficult to treat and may include flattened affect, anhedonia,  and social withdrawal. Additional clinical trials of SEP-363856 are required to confirm the safety and efficacy of this drug.[A193506]'
_pdbe_chem_comp_drugbank_details.cas_number 1310426-33-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
UJL Ulotaront wwPDB ?
UJL 'SEP-363856 ' wwPDB ?
UJL SEP-856 wwPDB ?
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
UJL DB15665 'Trace amine-associated receptor 1' Humans Q96RJ0 unknown 1
UJL DB15665 '5-hydroxytryptamine receptor 1A' Humans P08908 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UJL C1 C 3.805 -3.375 1
UJL C2 C 5.104 -1.125 2
UJL C3 C 5.104 0.375 3
UJL C4 C 3.805 2.625 4
UJL C5 C 5.104 3.375 5
UJL C6 C 6.404 2.625 6
UJL C7 C 7.823 3.082 7
UJL C8 C 8.698 1.875 8
UJL C9 C 6.404 1.125 9
UJL N1 N 3.805 -1.875 10
UJL O1 O 3.805 1.125 11
UJL S1 S 7.823 0.668 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UJL C1 N1 SINGLE NONE 1
UJL N1 C2 SINGLE NONE 2
UJL C3 C2 SINGLE BEGINDASH 3
UJL O1 C3 SINGLE NONE 4
UJL O1 C4 SINGLE NONE 5
UJL C3 C9 SINGLE NONE 6
UJL C4 C5 SINGLE NONE 7
UJL C9 S1 SINGLE NONE 8
UJL C9 C6 DOUBLE NONE 9
UJL S1 C8 SINGLE NONE 10
UJL C5 C6 SINGLE NONE 11
UJL C6 C7 SINGLE NONE 12
UJL C8 C7 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UJL MurckoScaffold S1 scaffold c1cc2c(s1)COCC2 InChI=1S/C7H8OS/c1-3-8-5-7-6(1)2-4-9-7/h2,4H,1,3,5H2 BJTCZAFEFCXHNR-UHFFFAOYSA-N
UJL thiophen F1 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UJL C3 S1 1
UJL C4 S1 1
UJL C5 S1 1
UJL C6 S1 1
UJL C7 S1 1
UJL C8 S1 1
UJL C9 S1 1
UJL O1 S1 1
UJL S1 S1 1
UJL C8 F1 1
UJL C7 F1 1
UJL C6 F1 1
UJL C9 F1 1
UJL S1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UJL
_pdbe_chem_comp_rdkit_properties.exactmw 183.072
_pdbe_chem_comp_rdkit_properties.amw 183.276
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 94.877
_pdbe_chem_comp_rdkit_properties.tpsa 21.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.472
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.111
_pdbe_chem_comp_rdkit_properties.chi0v 6.580
_pdbe_chem_comp_rdkit_properties.chi1v 3.830
_pdbe_chem_comp_rdkit_properties.chi2v 2.047
_pdbe_chem_comp_rdkit_properties.chi3v 2.047
_pdbe_chem_comp_rdkit_properties.chi4v 1.421
_pdbe_chem_comp_rdkit_properties.chi0n 18.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.461
_pdbe_chem_comp_rdkit_properties.chi2n 1.249
_pdbe_chem_comp_rdkit_properties.chi3n 1.249
_pdbe_chem_comp_rdkit_properties.chi4n 0.782
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.380
_pdbe_chem_comp_rdkit_properties.kappa1 1.997
_pdbe_chem_comp_rdkit_properties.kappa2 3.558
_pdbe_chem_comp_rdkit_properties.kappa3 1.397
_pdbe_chem_comp_rdkit_properties.Phi 0.592
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UJL UniChem ChEMBL CHEMBL4650337
UJL UniChem DrugBank DB15665
UJL UniChem PDBe UJL
UJL UniChem 'Guide to Pharmacology' 10454
UJL UniChem ZINC ZINC000205013646
UJL UniChem fdasrs 3K6270MG59
UJL UniChem ClinicalTrials SEP-363856
UJL UniChem MedChemExpress HY-136109A
UJL UniChem 'Probes And Drugs' PD055131
UJL UniChem PubChem 89532783
UJL UniChem SureChEMBL SCHEMBL14903737
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UJL C1 3.006 1.766 -1.073 ETKDGv3 1
UJL C2 1.922 -0.084 0.020 ETKDGv3 2
UJL C3 0.629 -0.905 0.128 ETKDGv3 3
UJL C4 -1.026 -1.973 -1.133 ETKDGv3 4
UJL C5 -2.158 -1.020 -0.712 ETKDGv3 5
UJL C6 -1.739 -0.237 0.494 ETKDGv3 6
UJL C7 -2.669 0.500 1.377 ETKDGv3 7
UJL C8 -2.073 1.105 2.404 ETKDGv3 8
UJL C9 -0.459 -0.133 0.838 ETKDGv3 9
UJL N1 1.729 1.090 -0.843 ETKDGv3 10
UJL O1 0.215 -1.287 -1.180 ETKDGv3 11
UJL S1 -0.315 0.811 2.340 ETKDGv3 12
UJL H1 3.466 2.084 -0.111 ETKDGv3 13
UJL H2 2.838 2.668 -1.698 ETKDGv3 14
UJL H3 3.705 1.096 -1.619 ETKDGv3 15
UJL H4 2.707 -0.745 -0.412 ETKDGv3 16
UJL H5 2.262 0.227 1.033 ETKDGv3 17
UJL H6 0.857 -1.815 0.727 ETKDGv3 18
UJL H7 -0.975 -2.846 -0.442 ETKDGv3 19
UJL H8 -1.251 -2.371 -2.145 ETKDGv3 20
UJL H9 -2.376 -0.313 -1.541 ETKDGv3 21
UJL H10 -3.075 -1.604 -0.487 ETKDGv3 22
UJL H11 -3.738 0.538 1.216 ETKDGv3 23
UJL H12 -2.588 1.682 3.160 ETKDGv3 24
UJL H13 1.107 1.768 -0.344 ETKDGv3 25
#