data_UL1
#
_chem_comp.id UL1
_chem_comp.name (5Z)-5-[(3,4-dimethoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H11 N O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-05-20
_chem_comp.pdbx_modified_date 2020-06-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 281.351
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UL1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6X1Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UL1 CAA C1 C 0 1 N N N N N N 4.090 453.721 96.047 4.159 3.024 0.384 CAA UL1 1
UL1 CAB C2 C 0 1 N N N N N N 2.192 457.920 98.824 4.495 -2.459 -0.733 CAB UL1 2
UL1 CAE C3 C 0 1 N N N N N N 0.262 453.720 101.082 -0.298 -1.538 0.270 CAE UL1 3
UL1 CAF C4 C 0 1 Y N N N N N 1.818 453.035 99.417 0.836 0.663 0.495 CAF UL1 4
UL1 CAG C5 C 0 1 Y N N N N N 2.726 453.275 98.377 1.974 1.438 0.451 CAG UL1 5
UL1 CAH C6 C 0 1 Y N N N N N 1.346 455.392 99.567 2.146 -1.283 -0.111 CAH UL1 6
UL1 CAM C7 C 0 1 Y N N N N N 1.107 454.080 100.006 0.912 -0.707 0.217 CAM UL1 7
UL1 CAN C8 C 0 1 Y N N N N N 2.953 454.572 97.943 3.197 0.864 0.132 CAN UL1 8
UL1 CAO C9 C 0 1 Y N N N N N 2.225 455.621 98.496 3.282 -0.500 -0.147 CAO UL1 9
UL1 CAP C10 C 0 1 N N N N N N -1.310 454.064 103.000 -2.836 -1.591 0.329 CAP UL1 10
UL1 CAQ C11 C 0 1 N N N N N N -1.594 456.233 103.363 -3.657 0.498 -0.166 CAQ UL1 11
UL1 CAR C12 C 0 1 N N N N N N -0.491 454.529 101.944 -1.522 -0.962 0.153 CAR UL1 12
UL1 NAI N1 N 0 1 N N N N N N -1.944 455.004 103.749 -3.869 -0.785 0.147 NAI UL1 13
UL1 OAC O1 O 0 1 N N N N N N -1.513 452.873 103.183 -2.966 -2.767 0.614 OAC UL1 14
UL1 OAJ O2 O 0 1 N N N N N N 3.824 454.841 96.917 4.316 1.635 0.089 OAJ UL1 15
UL1 OAK O3 O 0 1 N N N N N N 2.506 456.850 97.977 4.482 -1.057 -0.459 OAK UL1 16
UL1 SAD S1 S 0 1 N N N N N N -2.109 457.684 103.983 -4.853 1.692 -0.439 SAD UL1 17
UL1 SAL S2 S 0 1 N N N N N N -0.514 456.222 102.081 -1.901 0.725 -0.247 SAL UL1 18
UL1 H1 H1 H 0 1 N N N N N N 4.794 454.027 95.259 5.126 3.522 0.315 H1 UL1 19
UL1 H2 H2 H 0 1 N N N N N N 4.529 452.899 96.631 3.468 3.471 -0.330 H2 UL1 20
UL1 H3 H3 H 0 1 N N N N N N 3.150 453.383 95.587 3.762 3.138 1.393 H3 UL1 21
UL1 H4 H4 H 0 1 N N N N N N 2.449 458.868 98.329 3.845 -2.670 -1.582 H4 UL1 22
UL1 H5 H5 H 0 1 N N N N N N 1.116 457.905 99.050 5.512 -2.774 -0.967 H5 UL1 23
UL1 H6 H6 H 0 1 N N N N N N 2.764 457.828 99.759 4.138 -3.003 0.142 H6 UL1 24
UL1 H7 H7 H 0 1 N N N N N N 0.185 452.659 101.268 -0.214 -2.606 0.402 H7 UL1 25
UL1 H8 H8 H 0 1 N N N N N N 1.667 452.025 99.768 -0.113 1.111 0.749 H8 UL1 26
UL1 H9 H9 H 0 1 N N N N N N 3.248 452.451 97.914 1.915 2.495 0.666 H9 UL1 27
UL1 H10 H10 H 0 1 N N N N N N 0.855 456.223 100.052 2.210 -2.340 -0.326 H10 UL1 28
UL1 H11 H11 H 0 1 N N N N N N -2.586 454.802 104.489 -4.774 -1.123 0.240 H11 UL1 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UL1 CAA OAJ SING N N 1
UL1 OAJ CAN SING N N 2
UL1 CAN CAG DOUB Y N 3
UL1 CAN CAO SING Y N 4
UL1 OAK CAO SING N N 5
UL1 OAK CAB SING N N 6
UL1 CAG CAF SING Y N 7
UL1 CAO CAH DOUB Y N 8
UL1 CAF CAM DOUB Y N 9
UL1 CAH CAM SING Y N 10
UL1 CAM CAE SING N N 11
UL1 CAE CAR DOUB N Z 12
UL1 CAR SAL SING N N 13
UL1 CAR CAP SING N N 14
UL1 SAL CAQ SING N N 15
UL1 CAP OAC DOUB N N 16
UL1 CAP NAI SING N N 17
UL1 CAQ NAI SING N N 18
UL1 CAQ SAD DOUB N N 19
UL1 CAA H1 SING N N 20
UL1 CAA H2 SING N N 21
UL1 CAA H3 SING N N 22
UL1 CAB H4 SING N N 23
UL1 CAB H5 SING N N 24
UL1 CAB H6 SING N N 25
UL1 CAE H7 SING N N 26
UL1 CAF H8 SING N N 27
UL1 CAG H9 SING N N 28
UL1 CAH H10 SING N N 29
UL1 NAI H11 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UL1 SMILES ACDLabs 12.01 COc2ccc([C@H]=C1C(=O)NC(=S)S1)cc2OC
UL1 InChI InChI 1.03 InChI=1S/C12H11NO3S2/c1-15-8-4-3-7(5-9(8)16-2)6-10-11(14)13-12(17)18-10/h3-6H,1-2H3,(H,13,14,17)/b10-6-
UL1 InChIKey InChI 1.03 XVAIHVYMCLRIOV-POHAHGRESA-N
UL1 SMILES_CANONICAL CACTVS 3.385 COc1ccc(cc1OC)\C=C\2SC(=S)NC\2=O
UL1 SMILES CACTVS 3.385 COc1ccc(cc1OC)C=C2SC(=S)NC2=O
UL1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1OC)/C=C\2/C(=O)NC(=S)S2
UL1 SMILES "OpenEye OEToolkits" 2.0.7 COc1ccc(cc1OC)C=C2C(=O)NC(=S)S2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UL1 "SYSTEMATIC NAME" ACDLabs 12.01 (5Z)-5-[(3,4-dimethoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one
UL1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (5~{Z})-5-[(3,4-dimethoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UL1 'Create component' 2020-05-20 RCSB
UL1 'Initial release' 2020-06-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UL1 CAA C 8.196 -5.077 1
UL1 CAB C 3.000 -2.077 2
UL1 CAE C 6.897 1.673 3
UL1 CAF C 8.196 -0.577 4
UL1 CAG C 8.196 -2.077 5
UL1 CAH C 5.598 -0.577 6
UL1 CAM C 6.897 0.173 7
UL1 CAN C 6.897 -2.827 8
UL1 CAO C 5.598 -2.077 9
UL1 CAP C 8.353 3.915 10
UL1 CAQ C 10.570 2.928 11
UL1 CAR C 8.196 2.423 12
UL1 NAI N 9.820 4.227 13
UL1 OAC O 7.238 4.919 14
UL1 OAJ O 6.897 -4.327 15
UL1 OAK O 4.299 -2.827 16
UL1 SAD S 12.062 2.771 17
UL1 SAL S 9.566 1.813 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UL1 CAA OAJ SINGLE NONE 1
UL1 OAJ CAN SINGLE NONE 2
UL1 CAN CAG SINGLE NONE 3
UL1 CAN CAO DOUBLE NONE 4
UL1 OAK CAO SINGLE NONE 5
UL1 OAK CAB SINGLE NONE 6
UL1 CAG CAF DOUBLE NONE 7
UL1 CAO CAH SINGLE NONE 8
UL1 CAF CAM SINGLE NONE 9
UL1 CAH CAM DOUBLE NONE 10
UL1 CAM CAE SINGLE ENDUPRIGHT 11
UL1 CAE CAR DOUBLE NONE 12
UL1 CAR SAL SINGLE ENDDOWNRIGHT 13
UL1 CAR CAP SINGLE ENDUPRIGHT 14
UL1 SAL CAQ SINGLE NONE 15
UL1 CAP OAC DOUBLE NONE 16
UL1 CAP NAI SINGLE NONE 17
UL1 CAQ NAI SINGLE NONE 18
UL1 CAQ SAD DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UL1 MurckoScaffold S1 scaffold O=C1NC(=S)S/C1=C\c1ccccc1 InChI=1S/C10H7NOS2/c12-9-8(14-10(13)11-9)6-7-4-2-1-3-5-7/h1-6H,(H,11,12,13)/b8-6- OONWCXLYKDWKOU-VURMDHGXSA-N
UL1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
UL1 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UL1 CAE S1 1
UL1 CAF S1 1
UL1 CAG S1 1
UL1 CAH S1 1
UL1 CAM S1 1
UL1 CAN S1 1
UL1 CAO S1 1
UL1 CAP S1 1
UL1 CAQ S1 1
UL1 CAR S1 1
UL1 NAI S1 1
UL1 OAC S1 1
UL1 SAD S1 1
UL1 SAL S1 1
UL1 NAI F1 1
UL1 CAP F1 1
UL1 OAC F1 1
UL1 CAR F1 1
UL1 CAF F2 1
UL1 CAG F2 1
UL1 CAN F2 1
UL1 CAO F2 1
UL1 CAH F2 1
UL1 CAM F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UL1
_pdbe_chem_comp_rdkit_properties.exactmw 281.018
_pdbe_chem_comp_rdkit_properties.amw 281.358
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.859
_pdbe_chem_comp_rdkit_properties.tpsa 47.560
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.213
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.369
_pdbe_chem_comp_rdkit_properties.chi0v 10.121
_pdbe_chem_comp_rdkit_properties.chi1v 5.555
_pdbe_chem_comp_rdkit_properties.chi2v 2.853
_pdbe_chem_comp_rdkit_properties.chi3v 2.853
_pdbe_chem_comp_rdkit_properties.chi4v 1.986
_pdbe_chem_comp_rdkit_properties.chi0n 19.488
_pdbe_chem_comp_rdkit_properties.chi1n 9.777
_pdbe_chem_comp_rdkit_properties.chi2n 1.765
_pdbe_chem_comp_rdkit_properties.chi3n 1.765
_pdbe_chem_comp_rdkit_properties.chi4n 1.064
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.530
_pdbe_chem_comp_rdkit_properties.kappa1 4.863
_pdbe_chem_comp_rdkit_properties.kappa2 5.410
_pdbe_chem_comp_rdkit_properties.kappa3 2.651
_pdbe_chem_comp_rdkit_properties.Phi 1.461
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UL1 UniChem ChEMBL CHEMBL255130
UL1 UniChem PDBe UL1
UL1 UniChem ZINC ZINC000001236992
UL1 UniChem eMolecules 708006
UL1 UniChem SureChEMBL SCHEMBL8171882
UL1 UniChem 'PubChem TPHARMA' 144109037
UL1 UniChem PubChem 1204288
UL1 UniChem Mcule MCULE-4311319679
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UL1 CAA -3.879 -2.427 -0.860 ETKDGv3 1
UL1 CAB -2.951 2.697 0.989 ETKDGv3 2
UL1 CAE 1.823 0.516 0.855 ETKDGv3 3
UL1 CAF 0.192 -1.307 0.040 ETKDGv3 4
UL1 CAG -1.054 -1.700 -0.241 ETKDGv3 5
UL1 CAH -0.577 0.913 0.690 ETKDGv3 6
UL1 CAM 0.456 0.076 0.504 ETKDGv3 7
UL1 CAN -2.195 -0.759 -0.079 ETKDGv3 8
UL1 CAO -1.968 0.487 0.371 ETKDGv3 9
UL1 CAP 4.241 0.762 0.439 ETKDGv3 10
UL1 CAQ 4.628 -0.131 -1.681 ETKDGv3 11
UL1 CAR 2.900 0.301 0.085 ETKDGv3 12
UL1 NAI 5.213 0.511 -0.556 ETKDGv3 13
UL1 OAC 4.529 1.323 1.530 ETKDGv3 14
UL1 OAJ -3.511 -1.139 -0.378 ETKDGv3 15
UL1 OAK -3.059 1.356 0.525 ETKDGv3 16
UL1 SAD 5.546 -0.892 -2.797 ETKDGv3 17
UL1 SAL 2.860 -0.433 -1.563 ETKDGv3 18
UL1 H1 -3.608 -3.205 -0.116 ETKDGv3 19
UL1 H2 -3.375 -2.631 -1.828 ETKDGv3 20
UL1 H3 -4.977 -2.455 -1.019 ETKDGv3 21
UL1 H4 -3.962 3.154 1.013 ETKDGv3 22
UL1 H5 -2.310 3.289 0.302 ETKDGv3 23
UL1 H6 -2.529 2.713 2.016 ETKDGv3 24
UL1 H7 1.939 1.091 1.767 ETKDGv3 25
UL1 H8 1.004 -2.017 -0.049 ETKDGv3 26
UL1 H9 -1.219 -2.716 -0.573 ETKDGv3 27
UL1 H10 -0.391 1.914 1.060 ETKDGv3 28
UL1 H11 6.234 0.707 -0.447 ETKDGv3 29
#