data_UPB
#
_chem_comp.id UPB
_chem_comp.name
"3-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-[(4~{R})-3-ethyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H36 N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-03-16
_chem_comp.pdbx_modified_date 2021-08-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 584.662
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UPB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7E2U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UPB CHA C1 C 0 1 N N N N N N -8.439 -22.349 -20.850 2.261 -0.157 -0.595 CHA UPB 1
UPB NA N1 N 0 1 Y N N N N N -6.349 -22.206 -19.441 0.142 -1.409 -0.329 NA UPB 2
UPB C1A C2 C 0 1 Y N N N N N -7.482 -21.674 -20.260 1.515 -1.328 -0.409 C1A UPB 3
UPB C2A C3 C 0 1 Y N N N N N -7.294 -20.166 -20.251 2.032 -2.618 -0.271 C2A UPB 4
UPB C3A C4 C 0 1 Y N N N N N -6.087 -19.830 -19.481 0.966 -3.482 -0.108 C3A UPB 5
UPB C4A C5 C 0 1 Y N N N N N -5.501 -21.097 -18.979 -0.204 -2.724 -0.145 C4A UPB 6
UPB CMA C6 C 0 1 N N N N N N -5.524 -18.442 -19.210 1.052 -4.975 0.077 CMA UPB 7
UPB CAA C7 C 0 1 N N N N N N -8.208 -19.180 -20.970 3.490 -2.999 -0.297 CAA UPB 8
UPB CBA C8 C 0 1 N N N N N N -7.469 -18.699 -22.226 4.056 -2.947 1.124 CBA UPB 9
UPB CGA C9 C 0 1 N N N N N N -7.463 -19.794 -23.299 5.514 -3.328 1.098 CGA UPB 10
UPB O1A O1 O 0 1 N N N N N N -8.518 -20.437 -23.533 6.221 -3.352 2.238 O1A UPB 11
UPB O2A O2 O 0 1 N N N N N N -6.410 -20.049 -23.950 6.045 -3.612 0.051 O2A UPB 12
UPB CHB C10 C 0 1 N N N N N N -4.253 -21.216 -18.127 -1.515 -3.222 -0.010 CHB UPB 13
UPB NB N2 N 0 1 N N N N N N -4.685 -23.661 -17.557 -2.483 -1.385 -1.334 NB UPB 14
UPB C1B C11 C 0 1 N N N N N N -3.859 -22.389 -17.685 -2.581 -2.514 -0.532 C1B UPB 15
UPB C2B C12 C 0 1 N N N N N N -2.494 -22.731 -17.206 -3.940 -2.821 -0.337 C2B UPB 16
UPB C3B C13 C 0 1 N N N N N N -2.442 -24.100 -16.811 -4.682 -1.875 -1.023 C3B UPB 17
UPB C4B C14 C 0 1 N N N N N N -3.771 -24.741 -16.986 -3.720 -0.962 -1.656 C4B UPB 18
UPB CMB C15 C 0 1 N N N N N N -1.355 -21.724 -17.166 -4.487 -3.969 0.471 CMB UPB 19
UPB OB O3 O 0 1 N N N N N N -4.069 -25.867 -16.756 -3.993 0.006 -2.343 OB UPB 20
UPB CAB C16 C 0 1 N N N N N N -1.228 -24.840 -16.260 -6.150 -1.799 -1.103 CAB UPB 21
UPB CBB C17 C 0 1 N N N N N N -0.036 -24.659 -16.797 -6.728 -0.856 -1.842 CBB UPB 22
UPB NC N3 N 0 1 N N N N N N -4.982 -26.128 -20.078 -2.015 1.133 1.223 NC UPB 23
UPB C1C C18 C 0 1 N N N N N N -3.666 -26.511 -19.596 -3.147 0.642 1.748 C1C UPB 24
UPB C2C C19 C 0 1 N N R N N N -3.736 -27.921 -19.065 -4.141 1.771 1.897 C2C UPB 25
UPB C3C C20 C 0 1 N N N N N N -5.141 -28.403 -19.275 -3.410 2.993 1.375 C3C UPB 26
UPB C4C C21 C 0 1 N N N N N N -5.927 -27.212 -19.896 -2.085 2.493 0.975 C4C UPB 27
UPB CMC C22 C 0 1 N N N N N N -2.746 -28.791 -19.859 -5.391 1.495 1.058 CMC UPB 28
UPB OC O4 O 0 1 N N N N N N -2.701 -25.820 -19.627 -3.341 -0.515 2.055 OC UPB 29
UPB CAC C23 C 0 1 N N N N N N -5.514 -29.671 -19.136 -3.866 4.242 1.295 CAC UPB 30
UPB CBC C24 C 0 1 N N N N N N -6.974 -30.112 -19.122 -2.985 5.332 0.743 CBC UPB 31
UPB CHD C25 C 0 1 N N N N N N -7.188 -27.208 -20.265 -1.085 3.249 0.446 CHD UPB 32
UPB ND N4 N 0 1 N N N N N N -7.533 -24.811 -20.378 0.405 1.310 0.009 ND UPB 33
UPB C1D C26 C 0 1 N N N N N N -8.018 -26.030 -20.776 0.162 2.616 0.018 C1D UPB 34
UPB C2D C27 C 0 1 N N N N N N -9.145 -25.819 -21.511 1.313 3.294 -0.456 C2D UPB 35
UPB C3D C28 C 0 1 N N N N N N -9.377 -24.507 -21.584 2.241 2.347 -0.745 C3D UPB 36
UPB C4D C29 C 0 1 N N N N N N -8.384 -23.868 -20.893 1.652 1.091 -0.445 C4D UPB 37
UPB CMD C30 C 0 1 N N N N N N -10.046 -26.860 -22.178 1.475 4.785 -0.611 CMD UPB 38
UPB CAD C31 C 0 1 N N N N N N -10.593 -24.012 -22.370 3.630 2.583 -1.282 CAD UPB 39
UPB CBD C32 C 0 1 N N N N N N -10.212 -23.835 -23.835 4.625 2.624 -0.120 CBD UPB 40
UPB CGD C33 C 0 1 N N N N N N -11.430 -23.379 -24.633 6.013 2.860 -0.656 CGD UPB 41
UPB O1D O5 O 0 1 N N N N N N -12.599 -23.566 -24.190 7.055 2.934 0.187 O1D UPB 42
UPB O2D O6 O 0 1 N N N N N N -11.252 -22.811 -25.741 6.189 2.984 -1.845 O2D UPB 43
UPB H1 H1 H 0 1 N N N N N N -9.267 -21.826 -21.306 3.309 -0.219 -0.851 H1 UPB 44
UPB H3 H3 H 0 1 N N N N N N -6.192 -23.172 -19.238 -0.475 -0.663 -0.389 H3 UPB 45
UPB H4 H4 H 0 1 N N N N N N -5.964 -18.041 -18.285 1.124 -5.206 1.140 H4 UPB 46
UPB H5 H5 H 0 1 N N N N N N -4.431 -18.505 -19.099 0.160 -5.445 -0.337 H5 UPB 47
UPB H6 H6 H 0 1 N N N N N N -5.769 -17.776 -20.051 1.935 -5.354 -0.438 H6 UPB 48
UPB H7 H7 H 0 1 N N N N N N -8.429 -18.325 -20.314 3.595 -4.009 -0.693 H7 UPB 49
UPB H8 H8 H 0 1 N N N N N N -9.147 -19.677 -21.254 4.037 -2.301 -0.932 H8 UPB 50
UPB H9 H9 H 0 1 N N N N N N -6.432 -18.446 -21.961 3.951 -1.937 1.520 H9 UPB 51
UPB H10 H10 H 0 1 N N N N N N -7.974 -17.806 -22.623 3.509 -3.644 1.758 H10 UPB 52
UPB H11 H11 H 0 1 N N N N N N -8.356 -21.072 -24.221 7.153 -3.602 2.172 H11 UPB 53
UPB H12 H12 H 0 1 N N N N N N -3.684 -20.331 -17.882 -1.688 -4.158 0.501 H12 UPB 54
UPB H14 H14 H 0 1 N N N N N N -0.449 -22.210 -16.776 -4.634 -3.650 1.503 H14 UPB 55
UPB H15 H15 H 0 1 N N N N N N -1.161 -21.349 -18.182 -5.441 -4.287 0.050 H15 UPB 56
UPB H16 H16 H 0 1 N N N N N N -1.631 -20.884 -16.512 -3.783 -4.800 0.444 H16 UPB 57
UPB H17 H17 H 0 1 N N N N N N -1.344 -25.516 -15.426 -6.758 -2.509 -0.562 H17 UPB 58
UPB H18 H18 H 0 1 N N N N N N 0.820 -25.186 -16.402 -7.802 -0.742 -1.828 H18 UPB 59
UPB H19 H19 H 0 1 N N N N N N 0.084 -23.984 -17.631 -6.123 -0.204 -2.454 H19 UPB 60
UPB H20 H20 H 0 1 N N N N N N -5.205 -25.240 -20.480 -1.230 0.593 1.039 H20 UPB 61
UPB H21 H21 H 0 1 N N N N N N -3.478 -27.940 -17.996 -4.409 1.907 2.944 H21 UPB 62
UPB H23 H23 H 0 1 N N N N N N -2.784 -29.825 -19.485 -5.903 0.615 1.448 H23 UPB 63
UPB H24 H24 H 0 1 N N N N N N -3.019 -28.777 -20.925 -6.059 2.355 1.107 H24 UPB 64
UPB H25 H25 H 0 1 N N N N N N -1.728 -28.393 -19.736 -5.102 1.319 0.022 H25 UPB 65
UPB H26 H26 H 0 1 N N N N N N -4.748 -30.424 -19.028 -4.868 4.473 1.626 H26 UPB 66
UPB H28 H28 H 0 1 N N N N N N -7.027 -31.203 -18.995 -3.526 6.279 0.756 H28 UPB 67
UPB H29 H29 H 0 1 N N N N N N -7.497 -29.621 -18.289 -2.087 5.419 1.355 H29 UPB 68
UPB H30 H30 H 0 1 N N N N N N -7.451 -29.830 -20.072 -2.704 5.089 -0.282 H30 UPB 69
UPB H31 H31 H 0 1 N N N N N N -7.703 -28.155 -20.199 -1.213 4.316 0.342 H31 UPB 70
UPB H33 H33 H 0 1 N N N N N N -9.653 -27.868 -21.978 0.558 5.284 -0.298 H33 UPB 71
UPB H34 H34 H 0 1 N N N N N N -11.065 -26.777 -21.772 2.305 5.126 0.008 H34 UPB 72
UPB H35 H35 H 0 1 N N N N N N -10.068 -26.684 -23.264 1.679 5.021 -1.655 H35 UPB 73
UPB H36 H36 H 0 1 N N N N N N -10.928 -23.048 -21.959 3.898 1.776 -1.962 H36 UPB 74
UPB H37 H37 H 0 1 N N N N N N -11.407 -24.748 -22.289 3.656 3.533 -1.816 H37 UPB 75
UPB H38 H38 H 0 1 N N N N N N -9.850 -24.793 -24.237 4.356 3.432 0.561 H38 UPB 76
UPB H39 H39 H 0 1 N N N N N N -9.417 -23.079 -23.917 4.598 1.674 0.414 H39 UPB 77
UPB H40 H40 H 0 1 N N N N N N -13.232 -23.222 -24.809 7.926 3.087 -0.204 H40 UPB 78
UPB H2 H2 H 0 1 N N N N N N -5.649 -23.769 -17.802 -1.654 -0.965 -1.614 H2 UPB 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UPB O2D CGD DOUB N N 1
UPB CGD O1D SING N N 2
UPB CGD CBD SING N N 3
UPB O2A CGA DOUB N N 4
UPB CBD CAD SING N N 5
UPB O1A CGA SING N N 6
UPB CGA CBA SING N N 7
UPB CAD C3D SING N N 8
UPB CBA CAA SING N N 9
UPB CMD C2D SING N N 10
UPB C3D C2D DOUB N N 11
UPB C3D C4D SING N N 12
UPB C2D C1D SING N N 13
UPB CAA C2A SING N N 14
UPB C4D CHA DOUB N Z 15
UPB C4D ND SING N N 16
UPB CHA C1A SING N N 17
UPB C1D ND DOUB N N 18
UPB C1D CHD SING N N 19
UPB CHD C4C DOUB N Z 20
UPB C1A C2A DOUB Y N 21
UPB C1A NA SING Y N 22
UPB C2A C3A SING Y N 23
UPB NC C4C SING N N 24
UPB NC C1C SING N N 25
UPB C4C C3C SING N N 26
UPB CMC C2C SING N N 27
UPB OC C1C DOUB N N 28
UPB C1C C2C SING N N 29
UPB C3A CMA SING N N 30
UPB C3A C4A DOUB Y N 31
UPB NA C4A SING Y N 32
UPB C3C CAC DOUB N Z 33
UPB C3C C2C SING N N 34
UPB CAC CBC SING N N 35
UPB C4A CHB SING N N 36
UPB CHB C1B DOUB N Z 37
UPB C1B NB SING N N 38
UPB C1B C2B SING N N 39
UPB NB C4B SING N N 40
UPB C2B CMB SING N N 41
UPB C2B C3B DOUB N N 42
UPB C4B C3B SING N N 43
UPB C4B OB DOUB N N 44
UPB C3B CAB SING N N 45
UPB CBB CAB DOUB N N 46
UPB CHA H1 SING N N 47
UPB NA H3 SING N N 48
UPB CMA H4 SING N N 49
UPB CMA H5 SING N N 50
UPB CMA H6 SING N N 51
UPB CAA H7 SING N N 52
UPB CAA H8 SING N N 53
UPB CBA H9 SING N N 54
UPB CBA H10 SING N N 55
UPB O1A H11 SING N N 56
UPB CHB H12 SING N N 57
UPB CMB H14 SING N N 58
UPB CMB H15 SING N N 59
UPB CMB H16 SING N N 60
UPB CAB H17 SING N N 61
UPB CBB H18 SING N N 62
UPB CBB H19 SING N N 63
UPB NC H20 SING N N 64
UPB C2C H21 SING N N 65
UPB CMC H23 SING N N 66
UPB CMC H24 SING N N 67
UPB CMC H25 SING N N 68
UPB CAC H26 SING N N 69
UPB CBC H28 SING N N 70
UPB CBC H29 SING N N 71
UPB CBC H30 SING N N 72
UPB CHD H31 SING N N 73
UPB CMD H33 SING N N 74
UPB CMD H34 SING N N 75
UPB CMD H35 SING N N 76
UPB CAD H36 SING N N 77
UPB CAD H37 SING N N 78
UPB CBD H38 SING N N 79
UPB CBD H39 SING N N 80
UPB O1D H40 SING N N 81
UPB NB H2 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UPB InChI InChI 1.03 InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,19,34H,2,9-12H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b20-7-,26-13-,27-14-,29-15-/t19-/m1/s1
UPB InChIKey InChI 1.03 SNHIGJASYQUMKZ-NSNBCYBJSA-N
UPB SMILES_CANONICAL CACTVS 3.385 C\C=C/1[C@@H](C)C(=O)NC/1=C/C2=N\C(=C/c3[nH]c(\C=C4/NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
UPB SMILES CACTVS 3.385 CC=C1[CH](C)C(=O)NC1=CC2=NC(=Cc3[nH]c(C=C4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
UPB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C/C=C\1/[C@H](C(=O)N/C1=C\C2=N/C(=C\c3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)/C(=C2C)CCC(=O)O)C
UPB SMILES "OpenEye OEToolkits" 2.0.7 CC=C1C(C(=O)NC1=CC2=NC(=Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)C(=C2C)CCC(=O)O)C
#
_pdbx_chem_comp_identifier.comp_id UPB
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"3-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-[(3~{Z},4~{R})-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UPB 'Create component' 2021-03-16 PDBJ
UPB 'Initial release' 2021-08-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UPB CHA C 1.111 1.512 1
UPB NA N 0.421 -1.070 2
UPB C1A C 1.424 0.044 3
UPB C2A C 2.794 -0.565 4
UPB C3A C 2.637 -2.057 5
UPB C4A C 1.172 -2.369 6
UPB CMA C 3.754 -3.059 7
UPB CAA C 4.092 0.185 8
UPB CBA C 5.392 -0.564 9
UPB CGA C 6.691 0.187 10
UPB O1A O 7.990 -0.563 11
UPB O2A O 6.690 1.687 12
UPB CHB C 0.562 -3.740 13
UPB NB N 2.942 -4.954 14
UPB C1B C 1.445 -4.952 15
UPB C2B C 0.982 -6.383 16
UPB C3B C 2.197 -7.259 17
UPB C4B C 3.412 -6.379 18
UPB CMB C -0.443 -6.847 19
UPB OB O 4.838 -6.840 20
UPB CAB C 2.198 -8.760 21
UPB CBB C 3.498 -9.509 22
UPB NC N -5.128 4.003 23
UPB C1C C -6.499 4.612 24
UPB C2C C -7.502 3.498 25
UPB C3C C -6.750 2.199 26
UPB C4C C -5.286 2.511 27
UPB CMC C -8.993 3.653 28
UPB OC O -6.812 6.080 29
UPB CAC C -7.362 0.828 30
UPB CBC C -6.479 -0.385 31
UPB CHD C -4.168 1.507 32
UPB ND N -1.528 1.090 33
UPB C1D C -2.741 1.972 34
UPB C2D C -2.281 3.399 35
UPB C3D C -0.780 3.399 36
UPB C4D C -0.316 1.975 37
UPB CMD C -3.163 4.611 38
UPB CAD C 0.100 4.615 39
UPB CBD C 1.592 4.459 40
UPB CGD C 2.473 5.673 41
UPB O1D O 3.965 5.516 42
UPB O2D O 1.863 7.043 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UPB O2D CGD DOUBLE NONE 1
UPB CGD O1D SINGLE NONE 2
UPB CGD CBD SINGLE NONE 3
UPB O2A CGA DOUBLE NONE 4
UPB CBD CAD SINGLE NONE 5
UPB O1A CGA SINGLE NONE 6
UPB CGA CBA SINGLE NONE 7
UPB CAD C3D SINGLE NONE 8
UPB CBA CAA SINGLE NONE 9
UPB CMD C2D SINGLE NONE 10
UPB C3D C2D DOUBLE NONE 11
UPB C3D C4D SINGLE ENDUPRIGHT 12
UPB C2D C1D SINGLE NONE 13
UPB CAA C2A SINGLE NONE 14
UPB C4D CHA DOUBLE NONE 15
UPB C4D ND SINGLE ENDUPRIGHT 16
UPB CHA C1A SINGLE ENDUPRIGHT 17
UPB C1D ND DOUBLE NONE 18
UPB C1D CHD SINGLE ENDUPRIGHT 19
UPB CHD C4C DOUBLE NONE 20
UPB C1A C2A DOUBLE NONE 21
UPB C1A NA SINGLE NONE 22
UPB C2A C3A SINGLE NONE 23
UPB NC C4C SINGLE ENDUPRIGHT 24
UPB NC C1C SINGLE NONE 25
UPB C4C C3C SINGLE ENDUPRIGHT 26
UPB C2C CMC SINGLE BEGINWEDGE 27
UPB OC C1C DOUBLE NONE 28
UPB C1C C2C SINGLE NONE 29
UPB C3A CMA SINGLE NONE 30
UPB C3A C4A DOUBLE NONE 31
UPB NA C4A SINGLE NONE 32
UPB C3C CAC DOUBLE NONE 33
UPB C3C C2C SINGLE ENDUPRIGHT 34
UPB CAC CBC SINGLE ENDDOWNRIGHT 35
UPB C4A CHB SINGLE ENDUPRIGHT 36
UPB CHB C1B DOUBLE NONE 37
UPB C1B NB SINGLE ENDDOWNRIGHT 38
UPB C1B C2B SINGLE ENDUPRIGHT 39
UPB NB C4B SINGLE NONE 40
UPB C2B CMB SINGLE NONE 41
UPB C2B C3B DOUBLE NONE 42
UPB C4B C3B SINGLE NONE 43
UPB C4B OB DOUBLE NONE 44
UPB C3B CAB SINGLE NONE 45
UPB CBB CAB DOUBLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UPB MurckoScaffold S1 scaffold 'C=C1CC(=O)N/C1=C\C1=N/C(=C\c2ccc(/C=C3/C=CC(=O)N3)[nH]2)C=C1' InChI=1S/C20H16N4O2/c1-12-8-20(26)24-18(12)11-17-5-4-14(22-17)9-13-2-3-15(21-13)10-16-6-7-19(25)23-16/h2-7,9-11,21H,1,8H2,(H,23,25)(H,24,26)/b14-9-,16-10-,18-11- WBGQZGABDDQORG-MOOHUHQUSA-N
UPB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
UPB 3-pyrroline F2 fragment C1=CCNC1 InChI=1S/C4H7N/c1-2-4-5-3-1/h1-2,5H,3-4H2 JVQIKJMSUIMUDI-UHFFFAOYSA-N
UPB pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UPB CHA S1 1
UPB NA S1 1
UPB C1A S1 1
UPB C2A S1 1
UPB C3A S1 1
UPB C4A S1 1
UPB CHB S1 1
UPB NB S1 1
UPB C1B S1 1
UPB C2B S1 1
UPB C3B S1 1
UPB C4B S1 1
UPB OB S1 1
UPB NC S1 1
UPB C1C S1 1
UPB C2C S1 1
UPB C3C S1 1
UPB C4C S1 1
UPB OC S1 1
UPB CAC S1 1
UPB CHD S1 1
UPB ND S1 1
UPB C1D S1 1
UPB C2D S1 1
UPB C3D S1 1
UPB C4D S1 1
UPB NB F1 1
UPB C4B F1 1
UPB OB F1 1
UPB C3B F1 1
UPB NC F1 2
UPB C1C F1 2
UPB OC F1 2
UPB C2C F1 2
UPB C1B F2 1
UPB NB F2 1
UPB C4B F2 1
UPB C3B F2 1
UPB C2B F2 1
UPB C1A F3 1
UPB C2A F3 1
UPB C3A F3 1
UPB C4A F3 1
UPB NA F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UPB
_pdbe_chem_comp_rdkit_properties.exactmw 584.263
_pdbe_chem_comp_rdkit_properties.amw 584.673
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.303
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 300.535
_pdbe_chem_comp_rdkit_properties.tpsa 160.950
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.668
_pdbe_chem_comp_rdkit_properties.CrippenMR 163.568
_pdbe_chem_comp_rdkit_properties.chi0v 20.738
_pdbe_chem_comp_rdkit_properties.chi1v 11.014
_pdbe_chem_comp_rdkit_properties.chi2v 5.262
_pdbe_chem_comp_rdkit_properties.chi3v 5.262
_pdbe_chem_comp_rdkit_properties.chi4v 3.385
_pdbe_chem_comp_rdkit_properties.chi0n 56.738
_pdbe_chem_comp_rdkit_properties.chi1n 28.672
_pdbe_chem_comp_rdkit_properties.chi2n 5.262
_pdbe_chem_comp_rdkit_properties.chi3n 5.262
_pdbe_chem_comp_rdkit_properties.chi4n 3.385
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.990
_pdbe_chem_comp_rdkit_properties.kappa1 8.779
_pdbe_chem_comp_rdkit_properties.kappa2 12.481
_pdbe_chem_comp_rdkit_properties.kappa3 6.277
_pdbe_chem_comp_rdkit_properties.Phi 2.548
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UPB UniChem PDBe UPB
UPB UniChem ZINC ZINC000004096951
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UPB CHA -0.631 2.725 -0.207 ETKDGv3 1
UPB NA 0.986 0.954 -1.117 ETKDGv3 2
UPB C1A 0.713 2.129 -0.358 ETKDGv3 3
UPB C2A 1.827 2.562 0.236 ETKDGv3 4
UPB C3A 2.902 1.622 -0.117 ETKDGv3 5
UPB C4A 2.359 0.682 -0.890 ETKDGv3 6
UPB CMA 4.305 1.637 0.412 ETKDGv3 7
UPB CAA 1.957 3.770 1.128 ETKDGv3 8
UPB CBA 2.099 5.065 0.318 ETKDGv3 9
UPB CGA 3.398 5.113 -0.425 ETKDGv3 10
UPB O1A 4.552 5.542 0.224 ETKDGv3 11
UPB O2A 3.455 4.731 -1.625 ETKDGv3 12
UPB CHB 3.023 -0.524 -1.403 ETKDGv3 13
UPB NB 3.147 -1.561 0.805 ETKDGv3 14
UPB C1B 3.369 -1.540 -0.602 ETKDGv3 15
UPB C2B 4.000 -2.807 -1.019 ETKDGv3 16
UPB C3B 4.190 -3.563 0.073 ETKDGv3 17
UPB C4B 3.667 -2.811 1.219 ETKDGv3 18
UPB CMB 4.440 -3.159 -2.413 ETKDGv3 19
UPB OB 3.698 -3.179 2.423 ETKDGv3 20
UPB CAB 4.871 -4.878 0.097 ETKDGv3 21
UPB CBB 4.735 -5.750 1.093 ETKDGv3 22
UPB NC -1.254 -2.202 0.196 ETKDGv3 23
UPB C1C -0.712 -3.505 0.079 ETKDGv3 24
UPB C2C -1.706 -4.520 -0.378 ETKDGv3 25
UPB C3C -2.978 -3.708 -0.419 ETKDGv3 26
UPB C4C -2.633 -2.283 -0.157 ETKDGv3 27
UPB CMC -1.337 -5.061 -1.762 ETKDGv3 28
UPB OC 0.486 -3.769 0.360 ETKDGv3 29
UPB CAC -4.180 -4.306 -0.543 ETKDGv3 30
UPB CBC -5.513 -3.635 -0.447 ETKDGv3 31
UPB CHD -3.434 -1.206 -0.298 ETKDGv3 32
UPB ND -1.759 0.568 -0.338 ETKDGv3 33
UPB C1D -2.985 0.197 -0.169 ETKDGv3 34
UPB C2D -3.868 1.354 0.052 ETKDGv3 35
UPB C3D -3.112 2.452 -0.006 ETKDGv3 36
UPB C4D -1.745 1.984 -0.222 ETKDGv3 37
UPB CMD -5.354 1.310 0.255 ETKDGv3 38
UPB CAD -3.560 3.874 0.201 ETKDGv3 39
UPB CBD -3.416 4.272 1.672 ETKDGv3 40
UPB CGD -3.831 5.695 1.870 ETKDGv3 41
UPB O1D -2.900 6.716 1.710 ETKDGv3 42
UPB O2D -5.030 5.971 2.143 ETKDGv3 43
UPB H1 -0.707 3.784 0.000 ETKDGv3 44
UPB H3 0.344 0.429 -1.751 ETKDGv3 45
UPB H4 4.986 1.075 -0.261 ETKDGv3 46
UPB H5 4.675 2.679 0.483 ETKDGv3 47
UPB H6 4.326 1.175 1.421 ETKDGv3 48
UPB H7 2.829 3.652 1.806 ETKDGv3 49
UPB H8 1.058 3.846 1.777 ETKDGv3 50
UPB H9 1.253 5.170 -0.395 ETKDGv3 51
UPB H10 2.057 5.930 1.014 ETKDGv3 52
UPB H11 5.442 5.563 -0.259 ETKDGv3 53
UPB H12 3.155 -0.601 -2.473 ETKDGv3 54
UPB H14 3.803 -2.657 -3.167 ETKDGv3 55
UPB H15 4.350 -4.251 -2.589 ETKDGv3 56
UPB H16 5.495 -2.847 -2.558 ETKDGv3 57
UPB H17 5.493 -5.162 -0.742 ETKDGv3 58
UPB H18 5.254 -6.699 1.050 ETKDGv3 59
UPB H19 4.095 -5.559 1.942 ETKDGv3 60
UPB H20 -0.751 -1.402 0.637 ETKDGv3 61
UPB H21 -1.781 -5.344 0.365 ETKDGv3 62
UPB H23 -0.360 -5.588 -1.715 ETKDGv3 63
UPB H24 -2.106 -5.785 -2.105 ETKDGv3 64
UPB H25 -1.265 -4.235 -2.503 ETKDGv3 65
UPB H26 -4.199 -5.382 -0.670 ETKDGv3 66
UPB H28 -6.310 -4.407 -0.422 ETKDGv3 67
UPB H29 -5.689 -3.005 -1.343 ETKDGv3 68
UPB H30 -5.584 -3.043 0.489 ETKDGv3 69
UPB H31 -4.462 -1.327 -0.576 ETKDGv3 70
UPB H33 -5.657 0.329 0.675 ETKDGv3 71
UPB H34 -5.865 1.464 -0.718 ETKDGv3 72
UPB H35 -5.675 2.096 0.969 ETKDGv3 73
UPB H36 -2.944 4.546 -0.434 ETKDGv3 74
UPB H37 -4.616 3.992 -0.123 ETKDGv3 75
UPB H38 -4.044 3.610 2.307 ETKDGv3 76
UPB H39 -2.358 4.157 1.994 ETKDGv3 77
UPB H40 -3.169 7.686 1.825 ETKDGv3 78
UPB H2 2.684 -0.842 1.404 ETKDGv3 79
#