data_URQ
#
_chem_comp.id URQ
_chem_comp.name "(2S)-3-(carbamoylamino)-2-methylpropanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H10 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-07-02
_chem_comp.pdbx_modified_date 2013-09-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 146.144
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code URQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LCQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
URQ O41 O41 O 0 1 N N N N N N -0.579 18.525 23.826 2.243 -1.472 -0.168 O41 URQ 1
URQ C4 C4 C 0 1 N N N N N N -0.104 19.505 24.048 2.328 -0.305 0.129 C4 URQ 2
URQ O42 O42 O 0 1 N N N N N N 0.568 19.493 25.075 3.533 0.250 0.332 O42 URQ 3
URQ C5 C5 C 0 1 N N S N N N -0.479 20.629 23.115 1.081 0.530 0.267 C5 URQ 4
URQ C7 C7 C 0 1 N N N N N N -0.247 20.640 21.808 1.132 1.691 -0.729 C7 URQ 5
URQ C6 C6 C 0 1 N N N N N N -1.472 21.570 23.312 -0.147 -0.336 -0.020 C6 URQ 6
URQ N1 N1 N 0 1 N N N N N N -2.689 21.484 23.964 -1.362 0.443 0.230 N1 URQ 7
URQ C2 C2 C 0 1 N N N N N N -3.117 20.547 24.703 -2.573 -0.119 0.042 C2 URQ 8
URQ O2 O2 O 0 1 N N N N N N -4.165 20.515 25.209 -2.656 -1.272 -0.335 O2 URQ 9
URQ N3 N3 N 0 1 N N N N N N -2.358 19.574 24.840 -3.691 0.597 0.272 N3 URQ 10
URQ H1 H1 H 0 1 N N N N N N 0.535 18.628 25.466 4.304 -0.324 0.228 H1 URQ 11
URQ H2 H2 H 0 1 N N N N N N 0.540 19.910 21.569 0.230 2.295 -0.629 H2 URQ 12
URQ H3 H3 H 0 1 N N N N N N -1.169 20.375 21.270 2.007 2.308 -0.524 H3 URQ 13
URQ H4 H4 H 0 1 N N N N N N -0.956 22.394 23.827 -0.129 -0.657 -1.061 H4 URQ 14
URQ H5 H5 H 0 1 N N N N N N -2.651 18.783 25.377 -3.625 1.517 0.573 H5 URQ 15
URQ H6 H6 H 0 1 N N N N N N -1.454 19.581 24.413 -4.563 0.193 0.137 H6 URQ 16
URQ H7 H7 H 0 1 N N N N N N 0.360 21.284 23.393 1.019 0.925 1.282 H7 URQ 17
URQ H8 H8 H 0 1 N N N N N N 0.080 21.645 21.502 1.194 1.296 -1.743 H8 URQ 18
URQ H9 H9 H 0 1 N N N N N N -1.741 21.886 22.293 -0.135 -1.210 0.631 H9 URQ 19
URQ H10 H10 H 0 1 N N N N N N -3.309 22.258 23.836 -1.296 1.363 0.531 H10 URQ 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
URQ C7 C5 SING N N 1
URQ C5 C6 SING N N 2
URQ C5 C4 SING N N 3
URQ C6 N1 SING N N 4
URQ O41 C4 DOUB N N 5
URQ N1 C2 SING N N 6
URQ C4 O42 SING N N 7
URQ C2 N3 SING N N 8
URQ C2 O2 DOUB N N 9
URQ O42 H1 SING N N 10
URQ C7 H2 SING N N 11
URQ C7 H3 SING N N 12
URQ C6 H4 SING N N 13
URQ N3 H5 SING N N 14
URQ N3 H6 SING N N 15
URQ C5 H7 SING N N 16
URQ C7 H8 SING N N 17
URQ C6 H9 SING N N 18
URQ N1 H10 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
URQ SMILES ACDLabs 12.01 O=C(NCC(C(=O)O)C)N
URQ InChI InChI 1.03 InChI=1S/C5H10N2O3/c1-3(4(8)9)2-7-5(6)10/h3H,2H2,1H3,(H,8,9)(H3,6,7,10)/t3-/m0/s1
URQ InChIKey InChI 1.03 PHENTZNALBMCQD-VKHMYHEASA-N
URQ SMILES_CANONICAL CACTVS 3.385 C[C@@H](CNC(N)=O)C(O)=O
URQ SMILES CACTVS 3.385 C[CH](CNC(N)=O)C(O)=O
URQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@@H](CNC(=O)N)C(=O)O
URQ SMILES "OpenEye OEToolkits" 1.7.6 CC(CNC(=O)N)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
URQ "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-3-(carbamoylamino)-2-methylpropanoic acid"
URQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-3-(aminocarbonylamino)-2-methyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
URQ 'Create component' 2013-07-02 PDBJ
URQ 'Initial release' 2013-09-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
URQ O41 O 11.600 -0.375 1
URQ C4 C 10.301 0.375 2
URQ O42 O 10.301 1.875 3
URQ C5 C 9.002 -0.375 4
URQ C7 C 9.002 -1.875 5
URQ C6 C 7.702 0.375 6
URQ N1 N 6.404 -0.375 7
URQ C2 C 5.104 0.375 8
URQ O2 O 3.805 -0.375 9
URQ N3 N 5.104 1.875 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
URQ C5 C7 SINGLE BEGINWEDGE 1
URQ C5 C6 SINGLE NONE 2
URQ C5 C4 SINGLE NONE 3
URQ C6 N1 SINGLE NONE 4
URQ O41 C4 DOUBLE NONE 5
URQ N1 C2 SINGLE NONE 6
URQ C4 O42 SINGLE NONE 7
URQ C2 N3 SINGLE NONE 8
URQ C2 O2 DOUBLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id URQ
_pdbe_chem_comp_rdkit_properties.exactmw 146.069
_pdbe_chem_comp_rdkit_properties.amw 146.146
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 72.517
_pdbe_chem_comp_rdkit_properties.tpsa 92.420
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.625
_pdbe_chem_comp_rdkit_properties.CrippenMR 34.386
_pdbe_chem_comp_rdkit_properties.chi0v 4.619
_pdbe_chem_comp_rdkit_properties.chi1v 2.033
_pdbe_chem_comp_rdkit_properties.chi2v 0.467
_pdbe_chem_comp_rdkit_properties.chi3v 0.467
_pdbe_chem_comp_rdkit_properties.chi4v 0.149
_pdbe_chem_comp_rdkit_properties.chi0n 14.619
_pdbe_chem_comp_rdkit_properties.chi1n 6.783
_pdbe_chem_comp_rdkit_properties.chi2n 0.467
_pdbe_chem_comp_rdkit_properties.chi3n 0.467
_pdbe_chem_comp_rdkit_properties.chi4n 0.149
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.260
_pdbe_chem_comp_rdkit_properties.kappa1 1.664
_pdbe_chem_comp_rdkit_properties.kappa2 3.706
_pdbe_chem_comp_rdkit_properties.kappa3 3.707
_pdbe_chem_comp_rdkit_properties.Phi 0.617
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
URQ UniChem PDBe URQ
URQ UniChem ZINC ZINC000094437770
URQ UniChem SureChEMBL SCHEMBL10055164
URQ UniChem HMDB HMDB0002031
URQ UniChem PubChem 88558720
URQ UniChem Nikkaji J52.797A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
URQ O41 -0.768 1.135 -1.826 ETKDGv3 1
URQ C4 -0.872 1.156 -0.569 ETKDGv3 2
URQ O42 -0.607 2.332 0.127 ETKDGv3 3
URQ C5 -1.260 -0.086 0.186 ETKDGv3 4
URQ C7 -2.602 -0.623 -0.325 ETKDGv3 5
URQ C6 -0.165 -1.161 0.081 ETKDGv3 6
URQ N1 1.070 -0.703 0.718 ETKDGv3 7
URQ C2 2.180 -0.173 -0.019 ETKDGv3 8
URQ O2 2.161 -0.151 -1.279 ETKDGv3 9
URQ N3 3.319 0.335 0.674 ETKDGv3 10
URQ H1 -0.335 3.175 -0.363 ETKDGv3 11
URQ H2 -3.385 0.160 -0.239 ETKDGv3 12
URQ H3 -2.522 -0.939 -1.387 ETKDGv3 13
URQ H4 0.014 -1.434 -0.983 ETKDGv3 14
URQ H5 3.353 0.326 1.718 ETKDGv3 15
URQ H6 4.130 0.724 0.144 ETKDGv3 16
URQ H7 -1.390 0.177 1.259 ETKDGv3 17
URQ H8 -2.920 -1.497 0.284 ETKDGv3 18
URQ H9 -0.503 -2.083 0.601 ETKDGv3 19
URQ H10 1.101 -0.669 1.762 ETKDGv3 20
#