data_UVD
#
_chem_comp.id UVD
_chem_comp.name "methyl {4-[(pyridin-4-yl)methyl]phenyl}carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-06-02
_chem_comp.pdbx_modified_date 2020-06-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 242.273
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UVD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RJV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UVD N1 N1 N 0 1 Y N N N N N -24.006 12.194 25.906 4.603 1.754 0.773 N1 UVD 1
UVD C4 C1 C 0 1 Y N N N N N -18.681 14.070 24.957 0.079 -0.539 -1.401 C4 UVD 2
UVD C5 C2 C 0 1 Y N N N N N -19.116 13.653 26.208 0.920 -1.266 -0.579 C5 UVD 3
UVD C6 C3 C 0 1 N N N N N N -19.687 12.286 26.347 2.375 -1.421 -0.940 C6 UVD 4
UVD C7 C4 C 0 1 Y N N N N N -21.184 12.274 26.224 3.167 -0.293 -0.331 C7 UVD 5
UVD C8 C5 C 0 1 Y N N N N N -21.749 11.814 25.016 3.366 0.891 -1.026 C8 UVD 6
UVD C10 C6 C 0 1 Y N N N N N -23.435 12.624 27.088 4.434 0.643 1.463 C10 UVD 7
UVD C13 C7 C 0 1 Y N N N N N -18.310 15.708 27.201 -0.903 -1.710 0.908 C13 UVD 8
UVD N N2 N 0 1 N N N N N N -16.990 17.247 25.857 -3.099 -0.826 0.426 N UVD 9
UVD C C8 C 0 1 N N N N N N -14.389 19.428 27.055 -5.642 1.768 0.232 C UVD 10
UVD O O1 O 0 1 N N N N N N -15.399 18.815 26.270 -5.013 0.501 0.560 O UVD 11
UVD C1 C9 C 0 1 N N N N N N -16.031 17.698 26.786 -3.741 0.327 0.154 C1 UVD 12
UVD C11 C10 C 0 1 Y N N N N N -22.022 12.688 27.286 3.714 -0.413 0.937 C11 UVD 13
UVD C12 C11 C 0 1 Y N N N N N -18.954 14.474 27.325 0.430 -1.850 0.574 C12 UVD 14
UVD C2 C12 C 0 1 Y N N N N N -17.822 16.098 25.951 -1.748 -0.971 0.090 C2 UVD 15
UVD C3 C13 C 0 1 Y N N N N N -18.039 15.287 24.814 -1.253 -0.390 -1.070 C3 UVD 16
UVD C9 C14 C 0 1 Y N N N N N -23.142 11.802 24.902 4.097 1.904 -0.436 C9 UVD 17
UVD O1 O2 O 0 1 N N N N N N -15.758 17.274 27.916 -3.173 1.209 -0.458 O1 UVD 18
UVD H1 H1 H 0 1 N N N N N N -18.844 13.443 24.093 0.465 -0.084 -2.301 H1 UVD 19
UVD H2 H2 H 0 1 N N N N N N -19.263 11.645 25.560 2.745 -2.372 -0.558 H2 UVD 20
UVD H3 H3 H 0 1 N N N N N N -19.411 11.887 27.334 2.485 -1.398 -2.024 H3 UVD 21
UVD H4 H4 H 0 1 N N N N N N -21.123 11.480 24.202 2.954 1.019 -2.016 H4 UVD 22
UVD H5 H5 H 0 1 N N N N N N -24.085 12.925 27.897 4.864 0.557 2.450 H5 UVD 23
UVD H6 H6 H 0 1 N N N N N N -18.191 16.352 28.060 -1.286 -2.167 1.809 H6 UVD 24
UVD H7 H7 H 0 1 N N N N N N -17.098 17.802 25.032 -3.573 -1.556 0.855 H7 UVD 25
UVD H8 H8 H 0 1 N N N N N N -13.982 20.297 26.517 -6.662 1.777 0.616 H8 UVD 26
UVD H9 H9 H 0 1 N N N N N N -14.819 19.758 28.012 -5.076 2.583 0.683 H9 UVD 27
UVD H10 H10 H 0 1 N N N N N N -13.583 18.704 27.245 -5.661 1.895 -0.851 H10 UVD 28
UVD H11 H11 H 0 1 N N N N N N -21.606 13.042 28.218 3.579 -1.321 1.507 H11 UVD 29
UVD H12 H12 H 0 1 N N N N N N -19.327 14.155 28.287 1.089 -2.417 1.214 H12 UVD 30
UVD H13 H13 H 0 1 N N N N N N -17.706 15.615 23.840 -1.910 0.178 -1.712 H13 UVD 31
UVD H14 H14 H 0 1 N N N N N N -23.570 11.465 23.970 4.256 2.829 -0.970 H14 UVD 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UVD C3 C4 DOUB Y N 1
UVD C3 C2 SING Y N 2
UVD C9 C8 DOUB Y N 3
UVD C9 N1 SING Y N 4
UVD C4 C5 SING Y N 5
UVD C8 C7 SING Y N 6
UVD N C2 SING N N 7
UVD N C1 SING N N 8
UVD N1 C10 DOUB Y N 9
UVD C2 C13 DOUB Y N 10
UVD C5 C6 SING N N 11
UVD C5 C12 DOUB Y N 12
UVD C7 C6 SING N N 13
UVD C7 C11 DOUB Y N 14
UVD O C1 SING N N 15
UVD O C SING N N 16
UVD C1 O1 DOUB N N 17
UVD C10 C11 SING Y N 18
UVD C13 C12 SING Y N 19
UVD C4 H1 SING N N 20
UVD C6 H2 SING N N 21
UVD C6 H3 SING N N 22
UVD C8 H4 SING N N 23
UVD C10 H5 SING N N 24
UVD C13 H6 SING N N 25
UVD N H7 SING N N 26
UVD C H8 SING N N 27
UVD C H9 SING N N 28
UVD C H10 SING N N 29
UVD C11 H11 SING N N 30
UVD C12 H12 SING N N 31
UVD C3 H13 SING N N 32
UVD C9 H14 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UVD SMILES ACDLabs 12.01 n2ccc(Cc1ccc(cc1)NC(OC)=O)cc2
UVD InChI InChI 1.03 InChI=1S/C14H14N2O2/c1-18-14(17)16-13-4-2-11(3-5-13)10-12-6-8-15-9-7-12/h2-9H,10H2,1H3,(H,16,17)
UVD InChIKey InChI 1.03 ZWUBZIQOXMHHOZ-UHFFFAOYSA-N
UVD SMILES_CANONICAL CACTVS 3.385 COC(=O)Nc1ccc(Cc2ccncc2)cc1
UVD SMILES CACTVS 3.385 COC(=O)Nc1ccc(Cc2ccncc2)cc1
UVD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COC(=O)Nc1ccc(cc1)Cc2ccncc2
UVD SMILES "OpenEye OEToolkits" 2.0.7 COC(=O)Nc1ccc(cc1)Cc2ccncc2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UVD "SYSTEMATIC NAME" ACDLabs 12.01 "methyl {4-[(pyridin-4-yl)methyl]phenyl}carbamate"
UVD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl ~{N}-[4-(pyridin-4-ylmethyl)phenyl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UVD 'Create component' 2020-06-02 RCSB
UVD 'Initial release' 2020-06-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UVD N1 N 3.000 -5.250 1
UVD C4 C 5.598 -0.750 2
UVD C5 C 6.897 -1.500 3
UVD C6 C 6.897 -3.000 4
UVD C7 C 5.598 -3.750 5
UVD C8 C 5.598 -5.250 6
UVD C10 C 3.000 -3.750 7
UVD C13 C 8.196 0.750 8
UVD N N 6.897 3.000 9
UVD C C 9.495 6.000 10
UVD O O 8.196 5.250 11
UVD C1 C 8.196 3.750 12
UVD C11 C 4.299 -3.000 13
UVD C12 C 8.196 -0.750 14
UVD C2 C 6.897 1.500 15
UVD C3 C 5.598 0.750 16
UVD C9 C 4.299 -6.000 17
UVD O1 O 9.495 3.000 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UVD C3 C4 DOUBLE NONE 1
UVD C3 C2 SINGLE NONE 2
UVD C9 C8 SINGLE NONE 3
UVD C9 N1 DOUBLE NONE 4
UVD C4 C5 SINGLE NONE 5
UVD C8 C7 DOUBLE NONE 6
UVD N C2 SINGLE NONE 7
UVD N C1 SINGLE NONE 8
UVD N1 C10 SINGLE NONE 9
UVD C2 C13 DOUBLE NONE 10
UVD C5 C6 SINGLE NONE 11
UVD C5 C12 DOUBLE NONE 12
UVD C7 C6 SINGLE NONE 13
UVD C7 C11 SINGLE NONE 14
UVD O C1 SINGLE NONE 15
UVD O C SINGLE NONE 16
UVD C1 O1 DOUBLE NONE 17
UVD C10 C11 DOUBLE NONE 18
UVD C13 C12 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UVD MurckoScaffold S1 scaffold c1ccc(Cc2ccncc2)cc1 InChI=1S/C12H11N/c1-2-4-11(5-3-1)10-12-6-8-13-9-7-12/h1-9H,10H2 DBOLXXRVIFGDTI-UHFFFAOYSA-N
UVD phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
UVD pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
UVD Z57190020 F3 fragment COC(=O)Nc1ccc(Cc2ccncc2)cc1 InChI=1S/C14H14N2O2/c1-18-14(17)16-13-4-2-11(3-5-13)10-12-6-8-15-9-7-12/h2-9H,10H2,1H3,(H,16,17) ZWUBZIQOXMHHOZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UVD N1 S1 1
UVD C4 S1 1
UVD C5 S1 1
UVD C6 S1 1
UVD C7 S1 1
UVD C8 S1 1
UVD C10 S1 1
UVD C13 S1 1
UVD C11 S1 1
UVD C12 S1 1
UVD C2 S1 1
UVD C3 S1 1
UVD C9 S1 1
UVD C4 F1 1
UVD C3 F1 1
UVD C2 F1 1
UVD C13 F1 1
UVD C12 F1 1
UVD C5 F1 1
UVD C10 F2 1
UVD C11 F2 1
UVD C7 F2 1
UVD C8 F2 1
UVD C9 F2 1
UVD N1 F2 1
UVD C F3 1
UVD O F3 1
UVD C1 F3 1
UVD O1 F3 1
UVD N F3 1
UVD C2 F3 1
UVD C3 F3 1
UVD C4 F3 1
UVD C5 F3 1
UVD C6 F3 1
UVD C7 F3 1
UVD C8 F3 1
UVD C9 F3 1
UVD N1 F3 1
UVD C10 F3 1
UVD C11 F3 1
UVD C12 F3 1
UVD C13 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UVD
_pdbe_chem_comp_rdkit_properties.exactmw 242.106
_pdbe_chem_comp_rdkit_properties.amw 242.278
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 125.356
_pdbe_chem_comp_rdkit_properties.tpsa 51.220
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.361
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.157
_pdbe_chem_comp_rdkit_properties.chi0v 8.711
_pdbe_chem_comp_rdkit_properties.chi1v 4.507
_pdbe_chem_comp_rdkit_properties.chi2v 1.626
_pdbe_chem_comp_rdkit_properties.chi3v 1.626
_pdbe_chem_comp_rdkit_properties.chi4v 0.953
_pdbe_chem_comp_rdkit_properties.chi0n 22.711
_pdbe_chem_comp_rdkit_properties.chi1n 11.454
_pdbe_chem_comp_rdkit_properties.chi2n 1.626
_pdbe_chem_comp_rdkit_properties.chi3n 1.626
_pdbe_chem_comp_rdkit_properties.chi4n 0.953
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.360
_pdbe_chem_comp_rdkit_properties.kappa1 3.571
_pdbe_chem_comp_rdkit_properties.kappa2 5.816
_pdbe_chem_comp_rdkit_properties.kappa3 3.315
_pdbe_chem_comp_rdkit_properties.Phi 1.154
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UVD UniChem ChEMBL CHEMBL1904189
UVD UniChem PDBe UVD
UVD UniChem ZINC ZINC000000036068
UVD UniChem eMolecules 1680204
UVD UniChem PubChem 673870
UVD UniChem Mcule MCULE-3651621120
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UVD N1 -4.990 -1.947 -0.061 ETKDGv3 1
UVD C4 -0.583 1.316 -1.139 ETKDGv3 2
UVD C5 -1.000 1.037 0.256 ETKDGv3 3
UVD C6 -2.392 1.386 0.705 ETKDGv3 4
UVD C7 -3.328 0.238 0.441 ETKDGv3 5
UVD C8 -3.959 0.121 -0.739 ETKDGv3 6
UVD C10 -4.314 -1.856 1.205 ETKDGv3 7
UVD C13 1.205 0.035 0.621 ETKDGv3 8
UVD N 2.893 -0.064 -1.128 ETKDGv3 9
UVD C 6.496 -0.635 -0.182 ETKDGv3 10
UVD O 5.260 -0.612 -0.886 ETKDGv3 11
UVD C1 4.095 -0.060 -0.345 ETKDGv3 12
UVD C11 -3.511 -0.818 1.465 ETKDGv3 13
UVD C12 -0.146 0.412 1.085 ETKDGv3 14
UVD C2 1.598 0.320 -0.636 ETKDGv3 15
UVD C3 0.641 0.975 -1.559 ETKDGv3 16
UVD C9 -4.839 -1.039 -0.980 ETKDGv3 17
UVD O1 4.113 0.467 0.801 ETKDGv3 18
UVD H1 -1.270 1.795 -1.825 ETKDGv3 19
UVD H2 -2.742 2.299 0.175 ETKDGv3 20
UVD H3 -2.397 1.635 1.789 ETKDGv3 21
UVD H4 -3.829 0.863 -1.518 ETKDGv3 22
UVD H5 -4.456 -2.632 1.946 ETKDGv3 23
UVD H6 1.853 -0.501 1.300 ETKDGv3 24
UVD H7 2.989 -0.266 -2.149 ETKDGv3 25
UVD H8 6.386 -1.210 0.761 ETKDGv3 26
UVD H9 6.822 0.402 0.046 ETKDGv3 27
UVD H10 7.266 -1.123 -0.814 ETKDGv3 28
UVD H11 -3.000 -0.754 2.417 ETKDGv3 29
UVD H12 -0.439 0.169 2.099 ETKDGv3 30
UVD H13 0.935 1.183 -2.580 ETKDGv3 31
UVD H14 -5.359 -1.136 -1.924 ETKDGv3 32
#