data_V3W
#
_chem_comp.id V3W
_chem_comp.name 4-(4-methoxypiperidin-1-yl)carbonylbenzaldehyde
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H17 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-04-09
_chem_comp.pdbx_modified_date 2021-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 247.290
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V3W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7O5X
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V3W C01 C1 C 0 1 N N N N N N 21.687 20.984 -4.493 5.101 -0.984 0.402 C01 V3W 1
V3W C02 C2 C 0 1 Y N N N N N 22.627 21.098 -3.300 3.783 -0.343 0.249 C02 V3W 2
V3W C03 C3 C 0 1 Y N N N N N 23.696 21.981 -3.329 3.387 0.663 1.135 C03 V3W 3
V3W C04 C4 C 0 1 Y N N N N N 24.545 22.060 -2.235 2.154 1.261 0.991 C04 V3W 4
V3W C05 C5 C 0 1 Y N N N N N 24.318 21.266 -1.122 1.301 0.864 -0.040 C05 V3W 5
V3W C06 C6 C 0 1 N N N N N N 25.261 21.372 0.087 -0.023 1.509 -0.194 C06 V3W 6
V3W C08 C7 C 0 1 N N N N N N 25.724 22.022 2.563 -1.013 -0.703 -0.543 C08 V3W 7
V3W C09 C8 C 0 1 N N N N N N 25.119 22.211 3.961 -2.091 -1.296 0.370 C09 V3W 8
V3W C10 C9 C 0 1 N N N N N N 23.640 22.214 3.993 -3.458 -0.738 -0.033 C10 V3W 9
V3W C12 C10 C 0 1 N N N N N N 23.589 21.919 6.342 -5.743 -1.437 0.158 C12 V3W 10
V3W C13 C11 C 0 1 N N N N N N 23.134 23.088 2.921 -3.461 0.783 0.141 C13 V3W 11
V3W C14 C12 C 0 1 N N N N N N 23.396 22.414 1.582 -2.398 1.400 -0.774 C14 V3W 12
V3W C16 C13 C 0 1 Y N N N N N 23.248 20.379 -1.100 1.696 -0.139 -0.926 C16 V3W 13
V3W C17 C14 C 0 1 Y N N N N N 22.400 20.301 -2.191 2.930 -0.736 -0.787 C17 V3W 14
V3W N07 N1 N 0 1 N N N N N N 24.804 21.922 1.366 -1.105 0.763 -0.493 N07 V3W 15
V3W O11 O1 O 0 1 N N N N N N 23.158 22.661 5.233 -4.470 -1.313 0.796 O11 V3W 16
V3W O15 O2 O 0 1 N N N N N N 26.373 21.006 -0.032 -0.134 2.711 -0.051 O15 V3W 17
V3W H1 H1 H 0 1 N N N N N N 20.851 20.301 -4.468 5.760 -0.680 1.202 H1 V3W 18
V3W H4 H4 H 0 1 N N N N N N 23.866 22.602 -4.196 4.046 0.969 1.934 H4 V3W 19
V3W H5 H5 H 0 1 N N N N N N 25.383 22.741 -2.251 1.848 2.038 1.676 H5 V3W 20
V3W H6 H6 H 0 1 N N N N N N 26.315 21.095 2.592 -0.028 -1.019 -0.198 H6 V3W 21
V3W H7 H7 H 0 1 N N N N N N 26.392 22.877 2.384 -1.170 -1.046 -1.565 H7 V3W 22
V3W H8 H8 H 0 1 N N N N N N 25.475 21.392 4.603 -2.097 -2.381 0.269 H8 V3W 23
V3W H9 H9 H 0 1 N N N N N N 25.473 23.172 4.362 -1.879 -1.028 1.405 H9 V3W 24
V3W H10 H10 H 0 1 N N N N N N 23.285 21.190 3.808 -3.658 -0.984 -1.075 H10 V3W 25
V3W H11 H11 H 0 1 N N N N N N 23.159 22.347 7.260 -5.648 -2.072 -0.723 H11 V3W 26
V3W H12 H12 H 0 1 N N N N N N 23.259 20.875 6.235 -6.456 -1.882 0.852 H12 V3W 27
V3W H13 H13 H 0 1 N N N N N N 24.687 21.953 6.401 -6.096 -0.450 -0.143 H13 V3W 28
V3W H14 H14 H 0 1 N N N N N N 23.654 24.057 2.956 -4.442 1.177 -0.124 H14 V3W 29
V3W H15 H15 H 0 1 N N N N N N 22.053 23.247 3.051 -3.237 1.031 1.178 H15 V3W 30
V3W H16 H16 H 0 1 N N N N N N 23.165 23.139 0.787 -2.670 1.230 -1.816 H16 V3W 31
V3W H17 H17 H 0 1 N N N N N N 22.719 21.551 1.499 -2.330 2.471 -0.585 H17 V3W 32
V3W H18 H18 H 0 1 N N N N N N 23.079 19.754 -0.236 1.035 -0.445 -1.723 H18 V3W 33
V3W H19 H19 H 0 1 N N N N N N 21.562 19.619 -2.177 3.236 -1.510 -1.475 H19 V3W 34
V3W O1 O3 O 0 1 N Y N N N N 21.927 21.792 -5.644 5.444 -1.856 -0.368 O1 V3W 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V3W C01 C02 SING N N 1
V3W C03 C02 DOUB Y N 2
V3W C03 C04 SING Y N 3
V3W C02 C17 SING Y N 4
V3W C04 C05 DOUB Y N 5
V3W C17 C16 DOUB Y N 6
V3W C05 C16 SING Y N 7
V3W C05 C06 SING N N 8
V3W O15 C06 DOUB N N 9
V3W C06 N07 SING N N 10
V3W N07 C14 SING N N 11
V3W N07 C08 SING N N 12
V3W C14 C13 SING N N 13
V3W C08 C09 SING N N 14
V3W C13 C10 SING N N 15
V3W C09 C10 SING N N 16
V3W C10 O11 SING N N 17
V3W O11 C12 SING N N 18
V3W C01 H1 SING N N 19
V3W C03 H4 SING N N 20
V3W C04 H5 SING N N 21
V3W C08 H6 SING N N 22
V3W C08 H7 SING N N 23
V3W C09 H8 SING N N 24
V3W C09 H9 SING N N 25
V3W C10 H10 SING N N 26
V3W C12 H11 SING N N 27
V3W C12 H12 SING N N 28
V3W C12 H13 SING N N 29
V3W C13 H14 SING N N 30
V3W C13 H15 SING N N 31
V3W C14 H16 SING N N 32
V3W C14 H17 SING N N 33
V3W C16 H18 SING N N 34
V3W C17 H19 SING N N 35
V3W C01 O1 DOUB N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V3W InChI InChI 1.03 InChI=1S/C14H17NO3/c1-18-13-6-8-15(9-7-13)14(17)12-4-2-11(10-16)3-5-12/h2-5,10,13H,6-9H2,1H3
V3W InChIKey InChI 1.03 ZOMLYGRJHVNCLW-UHFFFAOYSA-N
V3W SMILES_CANONICAL CACTVS 3.385 COC1CCN(CC1)C(=O)c2ccc(C=O)cc2
V3W SMILES CACTVS 3.385 COC1CCN(CC1)C(=O)c2ccc(C=O)cc2
V3W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COC1CCN(CC1)C(=O)c2ccc(cc2)C=O
V3W SMILES "OpenEye OEToolkits" 2.0.7 COC1CCN(CC1)C(=O)c2ccc(cc2)C=O
#
_pdbx_chem_comp_identifier.comp_id V3W
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 4-(4-methoxypiperidin-1-yl)carbonylbenzaldehyde
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V3W 'Create component' 2021-04-09 PDBE
V3W 'Initial release' 2021-06-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
V3W C01 C 9.495 4.125 1
V3W C02 C 8.196 3.375 2
V3W C03 C 8.196 1.875 3
V3W C04 C 6.897 1.125 4
V3W C05 C 5.598 1.875 5
V3W C06 C 4.299 1.125 6
V3W C08 C 5.598 -1.125 7
V3W C09 C 5.598 -2.625 8
V3W C10 C 4.299 -3.375 9
V3W C12 C 3.000 -5.625 10
V3W C13 C 3.000 -2.625 11
V3W C14 C 3.000 -1.125 12
V3W C16 C 5.598 3.375 13
V3W C17 C 6.897 4.125 14
V3W N07 N 4.299 -0.375 15
V3W O11 O 4.299 -4.875 16
V3W O15 O 3.000 1.875 17
V3W O1 O 9.495 5.625 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
V3W C01 C02 SINGLE NONE 1
V3W C03 C02 DOUBLE NONE 2
V3W C03 C04 SINGLE NONE 3
V3W C02 C17 SINGLE NONE 4
V3W C04 C05 DOUBLE NONE 5
V3W C17 C16 DOUBLE NONE 6
V3W C05 C16 SINGLE NONE 7
V3W C05 C06 SINGLE NONE 8
V3W O15 C06 DOUBLE NONE 9
V3W C06 N07 SINGLE NONE 10
V3W N07 C14 SINGLE NONE 11
V3W N07 C08 SINGLE NONE 12
V3W C14 C13 SINGLE NONE 13
V3W C08 C09 SINGLE NONE 14
V3W C13 C10 SINGLE NONE 15
V3W C09 C10 SINGLE NONE 16
V3W C10 O11 SINGLE NONE 17
V3W O11 C12 SINGLE NONE 18
V3W C01 O1 DOUBLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
V3W MurckoScaffold S1 scaffold O=C(c1ccccc1)N1CCCCC1 InChI=1S/C12H15NO/c14-12(11-7-3-1-4-8-11)13-9-5-2-6-10-13/h1,3-4,7-8H,2,5-6,9-10H2 YXTROGRGRSPWKL-UHFFFAOYSA-N
V3W amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
V3W phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
V3W C02 S1 1
V3W C03 S1 1
V3W C04 S1 1
V3W C05 S1 1
V3W C06 S1 1
V3W C08 S1 1
V3W C09 S1 1
V3W C10 S1 1
V3W C13 S1 1
V3W C14 S1 1
V3W C16 S1 1
V3W C17 S1 1
V3W N07 S1 1
V3W O15 S1 1
V3W N07 F1 1
V3W C06 F1 1
V3W O15 F1 1
V3W C05 F1 1
V3W C02 F2 1
V3W C03 F2 1
V3W C04 F2 1
V3W C05 F2 1
V3W C16 F2 1
V3W C17 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id V3W
_pdbe_chem_comp_rdkit_properties.exactmw 247.121
_pdbe_chem_comp_rdkit_properties.amw 247.294
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 35
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.429
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.426
_pdbe_chem_comp_rdkit_properties.tpsa 46.610
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.641
_pdbe_chem_comp_rdkit_properties.CrippenMR 67.232
_pdbe_chem_comp_rdkit_properties.chi0v 8.672
_pdbe_chem_comp_rdkit_properties.chi1v 4.487
_pdbe_chem_comp_rdkit_properties.chi2v 1.809
_pdbe_chem_comp_rdkit_properties.chi3v 1.809
_pdbe_chem_comp_rdkit_properties.chi4v 1.007
_pdbe_chem_comp_rdkit_properties.chi0n 25.672
_pdbe_chem_comp_rdkit_properties.chi1n 12.987
_pdbe_chem_comp_rdkit_properties.chi2n 1.809
_pdbe_chem_comp_rdkit_properties.chi3n 1.809
_pdbe_chem_comp_rdkit_properties.chi4n 1.007
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.680
_pdbe_chem_comp_rdkit_properties.kappa1 3.252
_pdbe_chem_comp_rdkit_properties.kappa2 5.777
_pdbe_chem_comp_rdkit_properties.kappa3 2.764
_pdbe_chem_comp_rdkit_properties.Phi 1.044
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
V3W UniChem PDBe V3W
V3W UniChem SureChEMBL SCHEMBL20645608
V3W UniChem PubChem 66545606
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
V3W C01 5.386 2.270 -0.126 ETKDGv3 1
V3W C02 4.260 1.334 0.051 ETKDGv3 2
V3W C03 3.096 1.501 -0.602 ETKDGv3 3
V3W C04 1.985 0.546 -0.405 ETKDGv3 4
V3W C05 2.119 -0.494 0.439 ETKDGv3 5
V3W C06 1.020 -1.468 0.635 ETKDGv3 6
V3W C08 -1.240 -2.130 -0.223 ETKDGv3 7
V3W C09 -2.281 -1.462 -1.128 ETKDGv3 8
V3W C10 -3.015 -0.333 -0.389 ETKDGv3 9
V3W C12 -5.093 0.680 -0.658 ETKDGv3 10
V3W C13 -1.997 0.695 0.136 ETKDGv3 11
V3W C14 -0.958 0.025 1.041 ETKDGv3 12
V3W C16 3.409 -0.682 1.150 ETKDGv3 13
V3W C17 4.416 0.182 0.969 ETKDGv3 14
V3W N07 -0.347 -1.120 0.354 ETKDGv3 15
V3W O11 -3.897 0.298 -1.303 ETKDGv3 16
V3W O15 1.290 -2.630 1.045 ETKDGv3 17
V3W H1 6.310 2.106 0.414 ETKDGv3 18
V3W H4 2.951 2.331 -1.283 ETKDGv3 19
V3W H5 1.071 0.696 -0.965 ETKDGv3 20
V3W H6 -0.660 -2.859 -0.831 ETKDGv3 21
V3W H7 -1.749 -2.685 0.595 ETKDGv3 22
V3W H8 -1.772 -1.053 -2.029 ETKDGv3 23
V3W H9 -3.016 -2.225 -1.464 ETKDGv3 24
V3W H10 -3.547 -0.796 0.479 ETKDGv3 25
V3W H11 -4.894 1.342 0.213 ETKDGv3 26
V3W H12 -5.672 -0.215 -0.342 ETKDGv3 27
V3W H13 -5.717 1.248 -1.378 ETKDGv3 28
V3W H14 -2.521 1.486 0.714 ETKDGv3 29
V3W H15 -1.479 1.182 -0.720 ETKDGv3 30
V3W H16 -1.449 -0.329 1.974 ETKDGv3 31
V3W H17 -0.192 0.777 1.328 ETKDGv3 32
V3W H18 3.541 -1.516 1.828 ETKDGv3 33
V3W H19 5.348 0.032 1.499 ETKDGv3 34
V3W O1 5.297 3.263 -0.896 ETKDGv3 35
#