data_V6Y
#
_chem_comp.id V6Y
_chem_comp.name "3-(3-{[3-(4-carboxyphenoxy)phenyl]methoxy}phenyl)-1H-indole-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H21 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-07-09
_chem_comp.pdbx_modified_date 2021-07-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 479.480
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V6Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6XQ3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V6Y C01 C1 C 0 1 Y N N N N N -49.982 -6.629 28.112 8.025 3.009 1.502 C01 V6Y 1
V6Y C02 C2 C 0 1 Y N N N N N -50.495 -5.550 28.802 7.950 2.710 0.161 C02 V6Y 2
V6Y C03 C3 C 0 1 Y N N N N N -49.763 -4.373 28.789 7.039 1.756 -0.288 C03 V6Y 3
V6Y C04 C4 C 0 1 Y N N N N N -48.561 -4.276 28.105 6.206 1.111 0.645 C04 V6Y 4
V6Y C05 C5 C 0 1 Y N N N N N -48.064 -5.389 27.421 6.299 1.431 2.002 C05 V6Y 5
V6Y C06 C6 C 0 1 Y N N N N N -48.782 -6.570 27.419 7.203 2.365 2.419 C06 V6Y 6
V6Y C08 C7 C 0 1 Y N N N N N -48.984 -2.348 29.057 5.744 0.312 -1.445 C08 V6Y 7
V6Y C09 C8 C 0 1 Y N N N N N -48.053 -3.037 28.271 5.371 0.177 -0.119 C09 V6Y 8
V6Y C10 C9 C 0 1 Y N N N N N -46.706 -2.564 27.658 4.335 -0.730 0.421 C10 V6Y 9
V6Y C11 C10 C 0 1 Y N N N N N -46.601 -1.246 27.233 2.996 -0.550 0.074 C11 V6Y 10
V6Y C12 C11 C 0 1 Y N N N N N -45.430 -0.745 26.669 2.032 -1.403 0.583 C12 V6Y 11
V6Y C13 C12 C 0 1 Y N N N N N -44.325 -1.584 26.499 2.398 -2.434 1.437 C13 V6Y 12
V6Y C14 C13 C 0 1 Y N N N N N -44.393 -2.931 26.925 3.725 -2.615 1.783 C14 V6Y 13
V6Y C15 C14 C 0 1 Y N N N N N -45.565 -3.426 27.528 4.694 -1.774 1.275 C15 V6Y 14
V6Y C16 C15 C 0 1 N N N N N N -48.995 -0.905 29.585 5.171 -0.430 -2.570 C16 V6Y 15
V6Y C20 C16 C 0 1 Y N N N N N -43.115 1.373 26.622 -1.601 -1.802 0.328 C20 V6Y 16
V6Y C21 C17 C 0 1 Y N N N N N -43.381 1.783 27.920 -2.090 -2.371 -0.833 C21 V6Y 17
V6Y C22 C18 C 0 1 Y N N N N N -42.328 2.045 28.802 -3.363 -2.061 -1.275 C22 V6Y 18
V6Y C23 C19 C 0 1 Y N N N N N -41.008 1.902 28.380 -4.150 -1.182 -0.555 C23 V6Y 19
V6Y C24 C20 C 0 1 Y N N N N N -40.741 1.489 27.078 -3.662 -0.610 0.610 C24 V6Y 20
V6Y C25 C21 C 0 1 Y N N N N N -41.791 1.228 26.202 -2.383 -0.923 1.051 C25 V6Y 21
V6Y C27 C22 C 0 1 Y N N N N N -38.961 0.043 26.557 -5.680 0.523 0.857 C27 V6Y 22
V6Y C28 C23 C 0 1 Y N N N N N -39.546 -0.948 27.331 -6.754 -0.260 1.266 C28 V6Y 23
V6Y C29 C24 C 0 1 Y N N N N N -39.050 -2.211 27.225 -8.021 0.009 0.798 C29 V6Y 24
V6Y C30 C25 C 0 1 Y N N N N N -37.989 -2.492 26.322 -8.227 1.069 -0.089 C30 V6Y 25
V6Y C31 C26 C 0 1 Y N N N N N -37.420 -1.501 25.537 -7.144 1.854 -0.497 C31 V6Y 26
V6Y C32 C27 C 0 1 Y N N N N N -37.907 -0.229 25.691 -5.881 1.582 -0.021 C32 V6Y 27
V6Y C33 C28 C 0 1 N N N N N N -44.261 1.080 25.634 -0.215 -2.147 0.810 C33 V6Y 28
V6Y C34 C29 C 0 1 N N N N N N -37.450 -3.897 26.207 -9.582 1.360 -0.592 C34 V6Y 29
V6Y N07 N1 N 0 1 Y N N N N N -50.009 -3.185 29.362 6.743 1.260 -1.535 N07 V6Y 30
V6Y O17 O1 O 0 1 N N N N N N -50.095 -0.349 29.856 5.621 -0.210 -3.823 O17 V6Y 31
V6Y O18 O2 O 0 1 N N N N N N -47.941 -0.258 29.760 4.290 -1.246 -2.375 O18 V6Y 32
V6Y O19 O3 O 0 1 N N N N N N -45.420 0.612 26.281 0.726 -1.230 0.248 O19 V6Y 33
V6Y O26 O4 O 0 1 N N N N N N -39.418 1.357 26.628 -4.433 0.255 1.319 O26 V6Y 34
V6Y O35 O5 O 0 1 N N N N N N -38.254 -4.776 26.267 -9.778 2.383 -1.447 O35 V6Y 35
V6Y O36 O6 O 0 1 N N N N N N -36.230 -4.246 26.082 -10.522 0.677 -0.236 O36 V6Y 36
V6Y H1 H1 H 0 1 N N N N N N -50.536 -7.556 28.111 8.732 3.749 1.846 H1 V6Y 37
V6Y H2 H2 H 0 1 N N N N N N -51.433 -5.620 29.333 8.596 3.214 -0.543 H2 V6Y 38
V6Y H3 H3 H 0 1 N N N N N N -47.122 -5.326 26.896 5.660 0.938 2.720 H3 V6Y 39
V6Y H4 H4 H 0 1 N N N N N N -48.414 -7.434 26.886 7.275 2.612 3.468 H4 V6Y 40
V6Y H5 H5 H 0 1 N N N N N N -47.452 -0.590 27.343 2.712 0.254 -0.590 H5 V6Y 41
V6Y H6 H6 H 0 1 N N N N N N -43.422 -1.205 26.044 1.644 -3.098 1.834 H6 V6Y 42
V6Y H7 H7 H 0 1 N N N N N N -43.543 -3.582 26.787 4.004 -3.419 2.448 H7 V6Y 43
V6Y H8 H8 H 0 1 N N N N N N -45.605 -4.443 27.889 5.730 -1.918 1.547 H8 V6Y 44
V6Y H9 H9 H 0 1 N N N N N N -44.403 1.900 28.250 -1.477 -3.058 -1.397 H9 V6Y 45
V6Y H10 H10 H 0 1 N N N N N N -42.539 2.359 29.814 -3.743 -2.506 -2.182 H10 V6Y 46
V6Y H11 H11 H 0 1 N N N N N N -40.195 2.111 29.060 -5.144 -0.940 -0.901 H11 V6Y 47
V6Y H12 H12 H 0 1 N N N N N N -41.580 0.911 25.191 -2.001 -0.479 1.958 H12 V6Y 48
V6Y H13 H13 H 0 1 N N N N N N -40.368 -0.725 27.996 -6.595 -1.079 1.951 H13 V6Y 49
V6Y H14 H14 H 0 1 N N N N N N -39.465 -3.004 27.830 -8.855 -0.600 1.116 H14 V6Y 50
V6Y H15 H15 H 0 1 N N N N N N -36.629 -1.721 24.836 -7.299 2.677 -1.179 H15 V6Y 51
V6Y H16 H16 H 0 1 N N N N N N -37.463 0.579 25.128 -5.044 2.188 -0.336 H16 V6Y 52
V6Y H17 H17 H 0 1 N N N N N N -43.923 0.316 24.918 -0.181 -2.081 1.897 H17 V6Y 53
V6Y H18 H18 H 0 1 N N N N N N -44.507 2.006 25.094 0.036 -3.161 0.499 H18 V6Y 54
V6Y H19 H19 H 0 1 N N N N N N -50.808 -2.956 29.917 7.174 1.536 -2.359 H19 V6Y 55
V6Y H20 H20 H 0 1 N N N N N N -49.935 0.533 30.171 5.183 -0.746 -4.498 H20 V6Y 56
V6Y H21 H21 H 0 1 N N N N N N -37.812 -5.615 26.207 -10.684 2.535 -1.750 H21 V6Y 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V6Y C31 C32 DOUB Y N 1
V6Y C31 C30 SING Y N 2
V6Y C33 O19 SING N N 3
V6Y C33 C20 SING N N 4
V6Y C32 C27 SING Y N 5
V6Y O36 C34 DOUB N N 6
V6Y C25 C20 DOUB Y N 7
V6Y C25 C24 SING Y N 8
V6Y C34 O35 SING N N 9
V6Y C34 C30 SING N N 10
V6Y O19 C12 SING N N 11
V6Y C30 C29 DOUB Y N 12
V6Y C13 C12 DOUB Y N 13
V6Y C13 C14 SING Y N 14
V6Y C27 O26 SING N N 15
V6Y C27 C28 DOUB Y N 16
V6Y C20 C21 SING Y N 17
V6Y O26 C24 SING N N 18
V6Y C12 C11 SING Y N 19
V6Y C14 C15 DOUB Y N 20
V6Y C24 C23 DOUB Y N 21
V6Y C29 C28 SING Y N 22
V6Y C11 C10 DOUB Y N 23
V6Y C06 C05 DOUB Y N 24
V6Y C06 C01 SING Y N 25
V6Y C05 C04 SING Y N 26
V6Y C15 C10 SING Y N 27
V6Y C10 C09 SING N N 28
V6Y C21 C22 DOUB Y N 29
V6Y C04 C09 SING Y N 30
V6Y C04 C03 DOUB Y N 31
V6Y C01 C02 DOUB Y N 32
V6Y C09 C08 DOUB Y N 33
V6Y C23 C22 SING Y N 34
V6Y C03 C02 SING Y N 35
V6Y C03 N07 SING Y N 36
V6Y C08 N07 SING Y N 37
V6Y C08 C16 SING N N 38
V6Y C16 O18 DOUB N N 39
V6Y C16 O17 SING N N 40
V6Y C01 H1 SING N N 41
V6Y C02 H2 SING N N 42
V6Y C05 H3 SING N N 43
V6Y C06 H4 SING N N 44
V6Y C11 H5 SING N N 45
V6Y C13 H6 SING N N 46
V6Y C14 H7 SING N N 47
V6Y C15 H8 SING N N 48
V6Y C21 H9 SING N N 49
V6Y C22 H10 SING N N 50
V6Y C23 H11 SING N N 51
V6Y C25 H12 SING N N 52
V6Y C28 H13 SING N N 53
V6Y C29 H14 SING N N 54
V6Y C31 H15 SING N N 55
V6Y C32 H16 SING N N 56
V6Y C33 H17 SING N N 57
V6Y C33 H18 SING N N 58
V6Y N07 H19 SING N N 59
V6Y O17 H20 SING N N 60
V6Y O35 H21 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V6Y SMILES ACDLabs 12.01 c2cc1nc(C(=O)O)c(c1cc2)c3cc(ccc3)OCc4cccc(c4)Oc5ccc(cc5)C(O)=O
V6Y InChI InChI 1.03 InChI=1S/C29H21NO6/c31-28(32)19-11-13-21(14-12-19)36-23-8-3-5-18(15-23)17-35-22-7-4-6-20(16-22)26-24-9-1-2-10-25(24)30-27(26)29(33)34/h1-16,30H,17H2,(H,31,32)(H,33,34)
V6Y InChIKey InChI 1.03 PSBGQCWQSZIAEZ-UHFFFAOYSA-N
V6Y SMILES_CANONICAL CACTVS 3.385 OC(=O)c1[nH]c2ccccc2c1c3cccc(OCc4cccc(Oc5ccc(cc5)C(O)=O)c4)c3
V6Y SMILES CACTVS 3.385 OC(=O)c1[nH]c2ccccc2c1c3cccc(OCc4cccc(Oc5ccc(cc5)C(O)=O)c4)c3
V6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)c(c([nH]2)C(=O)O)c3cccc(c3)OCc4cccc(c4)Oc5ccc(cc5)C(=O)O
V6Y SMILES "OpenEye OEToolkits" 2.0.7 c1ccc2c(c1)c(c([nH]2)C(=O)O)c3cccc(c3)OCc4cccc(c4)Oc5ccc(cc5)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V6Y "SYSTEMATIC NAME" ACDLabs 12.01 "3-(3-{[3-(4-carboxyphenoxy)phenyl]methoxy}phenyl)-1H-indole-2-carboxylic acid"
V6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[3-[[3-(4-carboxyphenoxy)phenyl]methoxy]phenyl]-1~{H}-indole-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V6Y 'Create component' 2020-07-09 RCSB
V6Y 'Initial release' 2021-07-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
V6Y C01 C 3.000 -5.918 1
V6Y C02 C 4.299 -6.669 2
V6Y C03 C 5.598 -5.918 3
V6Y C04 C 5.598 -4.418 4
V6Y C05 C 4.299 -3.668 5
V6Y C06 C 3.000 -4.418 6
V6Y C08 C 7.893 -5.168 7
V6Y C09 C 7.018 -3.962 8
V6Y C10 C 7.483 -2.536 9
V6Y C11 C 8.951 -2.226 10
V6Y C12 C 9.417 -0.800 11
V6Y C13 C 8.415 0.316 12
V6Y C14 C 6.948 0.007 13
V6Y C15 C 6.482 -1.419 14
V6Y C16 C 9.393 -5.168 15
V6Y C20 C 12.819 1.244 16
V6Y C21 C 13.820 0.127 17
V6Y C22 C 15.288 0.437 18
V6Y C23 C 15.754 1.863 19
V6Y C24 C 14.752 2.979 20
V6Y C25 C 13.285 2.670 21
V6Y C27 C 16.686 4.714 22
V6Y C28 C 17.152 6.140 23
V6Y C29 C 18.620 6.449 24
V6Y C30 C 19.622 5.333 25
V6Y C31 C 19.156 3.907 26
V6Y C32 C 17.688 3.598 27
V6Y C33 C 11.351 0.934 28
V6Y C34 C 21.089 5.642 29
V6Y N07 N 7.018 -6.376 30
V6Y O17 O 10.143 -3.869 31
V6Y O18 O 10.143 -6.468 32
V6Y O19 O 10.885 -0.491 33
V6Y O26 O 15.218 4.405 34
V6Y O35 O 22.091 4.526 35
V6Y O36 O 21.555 7.068 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
V6Y C31 C32 DOUBLE NONE 1
V6Y C31 C30 SINGLE NONE 2
V6Y C33 O19 SINGLE NONE 3
V6Y C33 C20 SINGLE NONE 4
V6Y C32 C27 SINGLE NONE 5
V6Y O36 C34 DOUBLE NONE 6
V6Y C25 C20 SINGLE NONE 7
V6Y C25 C24 DOUBLE NONE 8
V6Y C34 O35 SINGLE NONE 9
V6Y C34 C30 SINGLE NONE 10
V6Y O19 C12 SINGLE NONE 11
V6Y C30 C29 DOUBLE NONE 12
V6Y C13 C12 SINGLE NONE 13
V6Y C13 C14 DOUBLE NONE 14
V6Y C27 O26 SINGLE NONE 15
V6Y C27 C28 DOUBLE NONE 16
V6Y C20 C21 DOUBLE NONE 17
V6Y O26 C24 SINGLE NONE 18
V6Y C12 C11 DOUBLE NONE 19
V6Y C14 C15 SINGLE NONE 20
V6Y C24 C23 SINGLE NONE 21
V6Y C29 C28 SINGLE NONE 22
V6Y C11 C10 SINGLE NONE 23
V6Y C06 C05 SINGLE NONE 24
V6Y C06 C01 DOUBLE NONE 25
V6Y C05 C04 DOUBLE NONE 26
V6Y C15 C10 DOUBLE NONE 27
V6Y C10 C09 SINGLE NONE 28
V6Y C21 C22 SINGLE NONE 29
V6Y C04 C09 SINGLE NONE 30
V6Y C04 C03 SINGLE NONE 31
V6Y C01 C02 SINGLE NONE 32
V6Y C09 C08 DOUBLE NONE 33
V6Y C23 C22 DOUBLE NONE 34
V6Y C03 C02 DOUBLE NONE 35
V6Y C03 N07 SINGLE NONE 36
V6Y C08 N07 SINGLE NONE 37
V6Y C08 C16 SINGLE NONE 38
V6Y C16 O18 DOUBLE NONE 39
V6Y C16 O17 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
V6Y MurckoScaffold S1 scaffold 'c1ccc(Oc2cccc(COc3cccc(-c4c[nH]c5ccccc45)c3)c2)cc1' InChI=1S/C27H21NO2/c1-2-10-22(11-3-1)30-24-13-6-8-20(16-24)19-29-23-12-7-9-21(17-23)26-18-28-27-15-5-4-14-25(26)27/h1-18,28H,19H2 VIIHSEBWNHKXOW-UHFFFAOYSA-N
V6Y indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
V6Y phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
V6Y pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
V6Y C01 S1 1
V6Y C02 S1 1
V6Y C03 S1 1
V6Y C04 S1 1
V6Y C05 S1 1
V6Y C06 S1 1
V6Y C08 S1 1
V6Y C09 S1 1
V6Y C10 S1 1
V6Y C11 S1 1
V6Y C12 S1 1
V6Y C13 S1 1
V6Y C14 S1 1
V6Y C15 S1 1
V6Y C20 S1 1
V6Y C21 S1 1
V6Y C22 S1 1
V6Y C23 S1 1
V6Y C24 S1 1
V6Y C25 S1 1
V6Y C27 S1 1
V6Y C28 S1 1
V6Y C29 S1 1
V6Y C30 S1 1
V6Y C31 S1 1
V6Y C32 S1 1
V6Y C33 S1 1
V6Y N07 S1 1
V6Y O19 S1 1
V6Y O26 S1 1
V6Y C03 F1 1
V6Y C04 F1 1
V6Y C09 F1 1
V6Y C08 F1 1
V6Y N07 F1 1
V6Y C05 F1 1
V6Y C06 F1 1
V6Y C01 F1 1
V6Y C02 F1 1
V6Y C01 F2 1
V6Y C06 F2 1
V6Y C05 F2 1
V6Y C04 F2 1
V6Y C03 F2 1
V6Y C02 F2 1
V6Y C10 F2 2
V6Y C11 F2 2
V6Y C12 F2 2
V6Y C13 F2 2
V6Y C14 F2 2
V6Y C15 F2 2
V6Y C20 F2 3
V6Y C25 F2 3
V6Y C24 F2 3
V6Y C23 F2 3
V6Y C22 F2 3
V6Y C21 F2 3
V6Y C27 F2 4
V6Y C32 F2 4
V6Y C31 F2 4
V6Y C30 F2 4
V6Y C29 F2 4
V6Y C28 F2 4
V6Y C03 F3 1
V6Y C04 F3 1
V6Y C09 F3 1
V6Y C08 F3 1
V6Y N07 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id V6Y
_pdbe_chem_comp_rdkit_properties.exactmw 479.137
_pdbe_chem_comp_rdkit_properties.amw 479.488
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 57
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.034
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 235.463
_pdbe_chem_comp_rdkit_properties.tpsa 108.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.243
_pdbe_chem_comp_rdkit_properties.CrippenMR 128.787
_pdbe_chem_comp_rdkit_properties.chi0v 17.397
_pdbe_chem_comp_rdkit_properties.chi1v 9.580
_pdbe_chem_comp_rdkit_properties.chi2v 4.291
_pdbe_chem_comp_rdkit_properties.chi3v 4.291
_pdbe_chem_comp_rdkit_properties.chi4v 2.837
_pdbe_chem_comp_rdkit_properties.chi0n 38.397
_pdbe_chem_comp_rdkit_properties.chi1n 19.844
_pdbe_chem_comp_rdkit_properties.chi2n 4.291
_pdbe_chem_comp_rdkit_properties.chi3n 4.291
_pdbe_chem_comp_rdkit_properties.chi4n 2.837
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.040
_pdbe_chem_comp_rdkit_properties.kappa1 8.874
_pdbe_chem_comp_rdkit_properties.kappa2 9.676
_pdbe_chem_comp_rdkit_properties.kappa3 4.761
_pdbe_chem_comp_rdkit_properties.Phi 2.385
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
V6Y UniChem PDBe V6Y
V6Y UniChem PubChem 155937458
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
V6Y C01 -6.023 3.143 1.570 ETKDGv3 1
V6Y C02 -6.117 3.243 0.088 ETKDGv3 2
V6Y C03 -5.499 2.305 -0.632 ETKDGv3 3
V6Y C04 -4.763 1.230 -0.024 ETKDGv3 4
V6Y C05 -4.668 1.100 1.303 ETKDGv3 5
V6Y C06 -5.338 2.128 2.145 ETKDGv3 6
V6Y C08 -4.671 0.994 -2.282 ETKDGv3 7
V6Y C09 -4.260 0.415 -1.129 ETKDGv3 8
V6Y C10 -3.468 -0.822 -0.972 ETKDGv3 9
V6Y C11 -2.230 -0.799 -0.156 ETKDGv3 10
V6Y C12 -1.516 -1.928 0.034 ETKDGv3 11
V6Y C13 -1.983 -3.190 -0.580 ETKDGv3 12
V6Y C14 -3.104 -3.216 -1.309 ETKDGv3 13
V6Y C15 -3.887 -1.981 -1.508 ETKDGv3 14
V6Y C16 -4.328 0.566 -3.652 ETKDGv3 15
V6Y C20 1.487 -1.262 2.163 ETKDGv3 16
V6Y C21 1.436 -1.751 3.415 ETKDGv3 17
V6Y C22 2.670 -2.212 4.082 ETKDGv3 18
V6Y C23 3.843 -2.156 3.440 ETKDGv3 19
V6Y C24 3.915 -1.628 2.060 ETKDGv3 20
V6Y C25 2.786 -1.223 1.448 ETKDGv3 21
V6Y C27 5.569 -0.697 0.433 ETKDGv3 22
V6Y C28 5.150 0.583 0.433 ETKDGv3 23
V6Y C29 5.619 1.522 -0.606 ETKDGv3 24
V6Y C30 6.483 1.115 -1.555 ETKDGv3 25
V6Y C31 6.961 -0.292 -1.536 ETKDGv3 26
V6Y C32 6.531 -1.142 -0.595 ETKDGv3 27
V6Y C33 0.234 -0.835 1.458 ETKDGv3 28
V6Y C34 6.957 2.048 -2.599 ETKDGv3 29
V6Y N07 -5.458 2.171 -2.041 ETKDGv3 30
V6Y O17 -4.981 1.150 -4.733 ETKDGv3 31
V6Y O18 -3.431 -0.294 -3.860 ETKDGv3 32
V6Y O19 -0.338 -1.961 0.797 ETKDGv3 33
V6Y O26 5.161 -1.616 1.413 ETKDGv3 34
V6Y O35 6.514 3.369 -2.621 ETKDGv3 35
V6Y O36 7.769 1.655 -3.480 ETKDGv3 36
V6Y H1 -6.509 3.886 2.189 ETKDGv3 37
V6Y H2 -6.671 4.042 -0.386 ETKDGv3 38
V6Y H3 -4.131 0.276 1.754 ETKDGv3 39
V6Y H4 -5.277 2.059 3.223 ETKDGv3 40
V6Y H5 -1.912 0.140 0.275 ETKDGv3 41
V6Y H6 -1.413 -4.099 -0.435 ETKDGv3 42
V6Y H7 -3.442 -4.144 -1.752 ETKDGv3 43
V6Y H8 -4.806 -2.026 -2.080 ETKDGv3 44
V6Y H9 0.495 -1.817 3.946 ETKDGv3 45
V6Y H10 2.622 -2.600 5.091 ETKDGv3 46
V6Y H11 4.744 -2.497 3.932 ETKDGv3 47
V6Y H12 2.810 -0.885 0.419 ETKDGv3 48
V6Y H13 4.483 0.948 1.203 ETKDGv3 49
V6Y H14 5.253 2.541 -0.583 ETKDGv3 50
V6Y H15 7.663 -0.641 -2.283 ETKDGv3 51
V6Y H16 6.887 -2.164 -0.590 ETKDGv3 52
V6Y H17 0.477 -0.046 0.713 ETKDGv3 53
V6Y H18 -0.494 -0.415 2.188 ETKDGv3 54
V6Y H19 -5.880 2.813 -2.748 ETKDGv3 55
V6Y H20 -4.755 0.882 -5.684 ETKDGv3 56
V6Y H21 6.835 4.014 -3.333 ETKDGv3 57
#