data_V8H
#
_chem_comp.id V8H
_chem_comp.name
"[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H26 N2 O15 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-04-28
_chem_comp.pdbx_modified_date 2022-04-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 548.330
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V8H
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 7OCQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V8H O7N O1 O 0 1 N N N N N N 59.282 13.586 -16.175 ? ? ? O7N V8H 1
V8H C7N C1 C 0 1 N N N N N N 58.451 12.789 -16.577 ? ? ? C7N V8H 2
V8H N7N N1 N 0 1 N N N N N N 57.165 12.887 -16.239 ? ? ? N7N V8H 3
V8H C3N C2 C 0 1 N N N N N N 58.884 11.665 -17.470 ? ? ? C3N V8H 4
V8H C2N C3 C 0 1 N N N N N N 58.526 10.365 -17.138 ? ? ? C2N V8H 5
V8H C4N C4 C 0 1 N N N N N N 59.692 11.955 -18.716 ? ? ? C4N V8H 6
V8H C5N C5 C 0 1 N N N N N N 60.019 10.741 -19.455 ? ? ? C5N V8H 7
V8H C6N C6 C 0 1 N N N N N N 59.604 9.485 -19.022 ? ? ? C6N V8H 8
V8H N1N N2 N 0 1 N N N N N N 58.886 9.321 -17.899 ? ? ? N1N V8H 9
V8H C1D C7 C 0 1 N N R N N N 58.488 7.965 -17.498 ? ? ? C1D V8H 10
V8H O4D O2 O 0 1 N N N N N N 57.067 7.850 -17.401 ? ? ? O4D V8H 11
V8H C2D C8 C 0 1 N N R N N N 59.053 7.593 -16.129 ? ? ? C2D V8H 12
V8H O2D O3 O 0 1 N N N N N N 60.179 6.719 -16.260 ? ? ? O2D V8H 13
V8H C3D C9 C 0 1 N N S N N N 57.903 6.936 -15.384 ? ? ? C3D V8H 14
V8H O3D O4 O 0 1 N N N N N N 58.234 5.608 -14.968 ? ? ? O3D V8H 15
V8H C4D C10 C 0 1 N N R N N N 56.736 6.922 -16.364 ? ? ? C4D V8H 16
V8H C5D C11 C 0 1 N N N N N N 55.407 7.287 -15.710 ? ? ? C5D V8H 17
V8H O5D O5 O 0 1 N N N N N N 55.461 8.608 -15.176 ? ? ? O5D V8H 18
V8H PN P1 P 0 1 N N N N N N 54.284 9.158 -14.224 ? ? ? PN V8H 19
V8H O1N O6 O 0 1 N N N N N N 54.829 10.297 -13.395 ? ? ? O1N V8H 20
V8H O2N O7 O 0 1 N N N N N N 53.140 9.627 -15.090 ? ? ? O2N V8H 21
V8H O3 O8 O 0 1 N N N N N N 53.766 7.984 -13.244 ? ? ? O3 V8H 22
V8H PA P2 P 0 1 N N N N N N 52.662 8.241 -12.094 ? ? ? PA V8H 23
V8H O1A O9 O 0 1 N N N N N N 53.132 7.603 -10.810 ? ? ? O1A V8H 24
V8H O2A O10 O 0 1 N N N N N N 52.458 9.724 -11.884 ? ? ? O2A V8H 25
V8H O5B O11 O 0 1 N N N N N N 51.255 7.587 -12.528 ? ? ? O5B V8H 26
V8H C5B C12 C 0 1 N N N N N N 51.021 6.182 -12.450 ? ? ? C5B V8H 27
V8H C4B C13 C 0 1 N N R N N N 49.521 5.914 -12.515 ? ? ? C4B V8H 28
V8H C3B C14 C 0 1 N N S N N N 48.807 6.372 -11.251 ? ? ? C3B V8H 29
V8H O3B O12 O 0 1 N N N N N N 47.696 7.211 -11.586 ? ? ? O3B V8H 30
V8H C2B C15 C 0 1 N N R N N N 48.363 5.103 -10.542 ? ? ? C2B V8H 31
V8H O2B O13 O 0 1 N N N N N N 46.961 5.122 -10.251 ? ? ? O2B V8H 32
V8H C1B C16 C 0 1 N N R N N N 48.702 3.951 -11.479 ? ? ? C1B V8H 33
V8H O4B O14 O 0 1 N N N N N N 49.283 4.511 -12.660 ? ? ? O4B V8H 34
V8H O1 O15 O 0 1 N N N N N N 49.629 3.055 -10.855 ? ? ? O1 V8H 35
V8H H1 H1 H 0 1 N N N N N N 56.860 13.628 -15.641 ? ? ? H1 V8H 36
V8H H2 H2 H 0 1 N N N N N N 56.505 12.219 -16.583 ? ? ? H2 V8H 37
V8H H3 H3 H 0 1 N N N N N N 57.944 10.190 -16.245 ? ? ? H3 V8H 38
V8H H4 H4 H 0 1 N N N N N N 60.627 12.455 -18.423 ? ? ? H4 V8H 39
V8H H5 H5 H 0 1 N N N N N N 60.599 10.819 -20.363 ? ? ? H5 V8H 40
V8H H6 H6 H 0 1 N N N N N N 59.867 8.616 -19.607 ? ? ? H6 V8H 41
V8H H7 H7 H 0 1 N N N N N N 58.868 7.245 -18.237 ? ? ? H7 V8H 42
V8H H8 H8 H 0 1 N N N N N N 59.344 8.513 -15.601 ? ? ? H8 V8H 43
V8H H9 H9 H 0 1 N N N N N N 60.513 6.501 -15.398 ? ? ? H9 V8H 44
V8H H10 H10 H 0 1 N N N N N N 57.636 7.555 -14.515 ? ? ? H10 V8H 45
V8H H11 H11 H 0 1 N N N N N N 58.962 5.639 -14.359 ? ? ? H11 V8H 46
V8H H12 H12 H 0 1 N N N N N N 56.649 5.910 -16.786 ? ? ? H12 V8H 47
V8H H13 H13 H 0 1 N N N N N N 54.606 7.233 -16.462 ? ? ? H13 V8H 48
V8H H14 H14 H 0 1 N N N N N N 55.196 6.576 -14.898 ? ? ? H14 V8H 49
V8H H15 H15 H 0 1 N N N N N N 54.340 11.089 -13.584 ? ? ? H15 V8H 50
V8H H16 H16 H 0 1 N N N N N N 53.203 8.266 -10.134 ? ? ? H16 V8H 51
V8H H17 H17 H 0 1 N N N N N N 51.520 5.679 -13.291 ? ? ? H17 V8H 52
V8H H18 H18 H 0 1 N N N N N N 51.422 5.795 -11.502 ? ? ? H18 V8H 53
V8H H19 H19 H 0 1 N N N N N N 49.102 6.458 -13.375 ? ? ? H19 V8H 54
V8H H20 H20 H 0 1 N N N N N N 49.518 6.914 -10.611 ? ? ? H20 V8H 55
V8H H21 H21 H 0 1 N N N N N N 47.258 7.491 -10.790 ? ? ? H21 V8H 56
V8H H22 H22 H 0 1 N N N N N N 48.942 4.990 -9.614 ? ? ? H22 V8H 57
V8H H23 H23 H 0 1 N N N N N N 46.768 5.846 -9.666 ? ? ? H23 V8H 58
V8H H24 H24 H 0 1 N N N N N N 47.775 3.416 -11.732 ? ? ? H24 V8H 59
V8H H25 H25 H 0 1 N N N N N N 49.236 2.687 -10.072 ? ? ? H25 V8H 60
V8H H26 H26 H 0 1 N N N N N N 59.109 12.621 -19.369 ? ? ? H26 V8H 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V8H C5N C6N DOUB N N 1
V8H C5N C4N SING N N 2
V8H C6N N1N SING N N 3
V8H C4N C3N SING N N 4
V8H N1N C1D SING N N 5
V8H N1N C2N SING N N 6
V8H C1D O4D SING N N 7
V8H C1D C2D SING N N 8
V8H C3N C2N DOUB N N 9
V8H C3N C7N SING N N 10
V8H O4D C4D SING N N 11
V8H C7N N7N SING N N 12
V8H C7N O7N DOUB N N 13
V8H C4D C5D SING N N 14
V8H C4D C3D SING N N 15
V8H O2D C2D SING N N 16
V8H C2D C3D SING N N 17
V8H C5D O5D SING N N 18
V8H C3D O3D SING N N 19
V8H O5D PN SING N N 20
V8H O2N PN DOUB N N 21
V8H PN O1N SING N N 22
V8H PN O3 SING N N 23
V8H O3 PA SING N N 24
V8H O4B C4B SING N N 25
V8H O4B C1B SING N N 26
V8H O5B C5B SING N N 27
V8H O5B PA SING N N 28
V8H C4B C5B SING N N 29
V8H C4B C3B SING N N 30
V8H PA O2A DOUB N N 31
V8H PA O1A SING N N 32
V8H O3B C3B SING N N 33
V8H C1B O1 SING N N 34
V8H C1B C2B SING N N 35
V8H C3B C2B SING N N 36
V8H C2B O2B SING N N 37
V8H N7N H1 SING N N 38
V8H N7N H2 SING N N 39
V8H C2N H3 SING N N 40
V8H C4N H4 SING N N 41
V8H C5N H5 SING N N 42
V8H C6N H6 SING N N 43
V8H C1D H7 SING N N 44
V8H C2D H8 SING N N 45
V8H O2D H9 SING N N 46
V8H C3D H10 SING N N 47
V8H O3D H11 SING N N 48
V8H C4D H12 SING N N 49
V8H C5D H13 SING N N 50
V8H C5D H14 SING N N 51
V8H O1N H15 SING N N 52
V8H O1A H16 SING N N 53
V8H C5B H17 SING N N 54
V8H C5B H18 SING N N 55
V8H C4B H19 SING N N 56
V8H C3B H20 SING N N 57
V8H O3B H21 SING N N 58
V8H C2B H22 SING N N 59
V8H O2B H23 SING N N 60
V8H C1B H24 SING N N 61
V8H O1 H25 SING N N 62
V8H C4N H26 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V8H InChI InChI 1.03 InChI=1S/C16H26N2O15P2/c17-14(23)7-2-1-3-18(4-7)15-12(21)10(19)8(31-15)5-29-34(25,26)33-35(27,28)30-6-9-11(20)13(22)16(24)32-9/h1,3-4,8-13,15-16,19-22,24H,2,5-6H2,(H2,17,23)(H,25,26)(H,27,28)/t8-,9-,10-,11-,12-,13-,15-,16-/m1/s1
V8H InChIKey InChI 1.03 CORMEBAPIXUNEL-UDOSWUQBSA-N
V8H SMILES_CANONICAL CACTVS 3.385 NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@@H](O)[C@H](O)[C@@H]3O)[C@@H](O)[C@H]2O
V8H SMILES CACTVS 3.385 NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O)[CH](O)[CH]2O
V8H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C1C=CN(C=C1C(=O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)O)O)O)O)O
V8H SMILES "OpenEye OEToolkits" 2.0.7 C1C=CN(C=C1C(=O)N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id V8H
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"[[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonyl-4~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V8H 'Create component' 2021-04-28 PDBE
V8H 'Other modification' 2021-04-29 PDBE
V8H 'Initial release' 2022-04-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
V8H O7N O 3.936 9.175 1
V8H C7N C 5.050 8.171 2
V8H N7N N 6.477 8.635 3
V8H C3N C 4.739 6.704 4
V8H C2N C 5.853 5.701 5
V8H C4N C 3.312 6.241 6
V8H C5N C 3.000 4.774 7
V8H C6N C 4.115 3.770 8
V8H N1N N 5.541 4.233 9
V8H C1D C 6.656 3.230 10
V8H O4D O 6.499 1.738 11
V8H C2D C 8.123 3.542 12
V8H O2D O 8.733 4.912 13
V8H C3D C 8.873 2.243 14
V8H O3D O 10.365 2.086 15
V8H C4D C 7.870 1.128 16
V8H C5D C 8.181 -0.340 17
V8H O5D O 9.608 -0.803 18
V8H PN P 9.920 -2.270 19
V8H O1N O 11.387 -1.958 20
V8H O2N O 8.453 -2.582 21
V8H O3 O 10.232 -3.737 22
V8H PA P 11.658 -4.201 23
V8H O1A O 11.195 -5.628 24
V8H O2A O 12.122 -2.774 25
V8H O5B O 13.085 -4.664 26
V8H C5B C 13.397 -6.132 27
V8H C4B C 14.823 -6.595 28
V8H C3B C 15.287 -8.022 29
V8H O3B O 14.405 -9.235 30
V8H C2B C 16.787 -8.022 31
V8H O2B O 17.669 -9.235 32
V8H C1B C 17.250 -6.595 33
V8H O4B O 16.037 -5.713 34
V8H O1 O 18.677 -6.132 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
V8H C5N C6N DOUBLE NONE 1
V8H C5N C4N SINGLE NONE 2
V8H C6N N1N SINGLE NONE 3
V8H C4N C3N SINGLE NONE 4
V8H C1D N1N SINGLE BEGINWEDGE 5
V8H N1N C2N SINGLE NONE 6
V8H C1D O4D SINGLE NONE 7
V8H C1D C2D SINGLE NONE 8
V8H C3N C2N DOUBLE NONE 9
V8H C3N C7N SINGLE NONE 10
V8H O4D C4D SINGLE NONE 11
V8H C7N N7N SINGLE NONE 12
V8H C7N O7N DOUBLE NONE 13
V8H C4D C5D SINGLE BEGINWEDGE 14
V8H C4D C3D SINGLE NONE 15
V8H C2D O2D SINGLE BEGINDASH 16
V8H C2D C3D SINGLE NONE 17
V8H C5D O5D SINGLE NONE 18
V8H C3D O3D SINGLE BEGINDASH 19
V8H O5D PN SINGLE NONE 20
V8H O2N PN DOUBLE NONE 21
V8H PN O1N SINGLE BEGINWEDGE 22
V8H PN O3 SINGLE NONE 23
V8H O3 PA SINGLE NONE 24
V8H O4B C4B SINGLE NONE 25
V8H O4B C1B SINGLE NONE 26
V8H O5B C5B SINGLE NONE 27
V8H O5B PA SINGLE NONE 28
V8H C4B C5B SINGLE BEGINWEDGE 29
V8H C4B C3B SINGLE NONE 30
V8H PA O2A DOUBLE NONE 31
V8H PA O1A SINGLE BEGINDASH 32
V8H C3B O3B SINGLE BEGINDASH 33
V8H C1B O1 SINGLE BEGINWEDGE 34
V8H C1B C2B SINGLE NONE 35
V8H C3B C2B SINGLE NONE 36
V8H C2B O2B SINGLE BEGINDASH 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
V8H MurckoScaffold S1 scaffold 'O=[PH](OC[C@@H]1CCCO1)O[PH](=O)OC[C@@H]1CC[C@H](N2C=CCC=C2)O1' InChI=1S/C15H25NO7P2/c17-24(20-11-13-5-4-10-19-13)23-25(18)21-12-14-6-7-15(22-14)16-8-2-1-3-9-16/h2-3,8-9,13-15,24-25H,1,4-7,10-12H2/t13-,14-,15+/m0/s1 SNEFXWHNIJWUHC-SOUVJXGZSA-N
V8H amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
V8H furanose F2 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
V8H phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
V8H ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
V8H C3N S1 1
V8H C2N S1 1
V8H C4N S1 1
V8H C5N S1 1
V8H C6N S1 1
V8H N1N S1 1
V8H C1D S1 1
V8H O4D S1 1
V8H C2D S1 1
V8H C3D S1 1
V8H C4D S1 1
V8H C5D S1 1
V8H O5D S1 1
V8H PN S1 1
V8H O2N S1 1
V8H O3 S1 1
V8H PA S1 1
V8H O2A S1 1
V8H O5B S1 1
V8H C5B S1 1
V8H C4B S1 1
V8H C3B S1 1
V8H C2B S1 1
V8H C1B S1 1
V8H O4B S1 1
V8H N7N F1 1
V8H C7N F1 1
V8H O7N F1 1
V8H C3N F1 1
V8H C3B F2 1
V8H C4B F2 1
V8H O4B F2 1
V8H C1B F2 1
V8H C2B F2 1
V8H O1 F2 1
V8H O5D F3 1
V8H PN F3 1
V8H O2N F3 1
V8H O1N F3 1
V8H O3 F3 1
V8H O3 F3 2
V8H PA F3 2
V8H O2A F3 2
V8H O5B F3 2
V8H O1A F3 2
V8H C2D F4 1
V8H C3D F4 1
V8H C4D F4 1
V8H O4D F4 1
V8H C1D F4 1
V8H C5D F4 1
V8H O5D F4 1
V8H O3D F4 1
V8H O2D F4 1
V8H C2B F4 2
V8H C3B F4 2
V8H C4B F4 2
V8H O4B F4 2
V8H C1B F4 2
V8H C5B F4 2
V8H O5B F4 2
V8H O3B F4 2
V8H O2B F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id V8H
_pdbe_chem_comp_rdkit_properties.exactmw 548.081
_pdbe_chem_comp_rdkit_properties.amw 548.331
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.688
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 234.557
_pdbe_chem_comp_rdkit_properties.tpsa 268.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.289
_pdbe_chem_comp_rdkit_properties.CrippenMR 109.081
_pdbe_chem_comp_rdkit_properties.chi0v 17.701
_pdbe_chem_comp_rdkit_properties.chi1v 10.976
_pdbe_chem_comp_rdkit_properties.chi2v 5.524
_pdbe_chem_comp_rdkit_properties.chi3v 5.524
_pdbe_chem_comp_rdkit_properties.chi4v 3.556
_pdbe_chem_comp_rdkit_properties.chi0n 41.913
_pdbe_chem_comp_rdkit_properties.chi1n 20.307
_pdbe_chem_comp_rdkit_properties.chi2n 3.294
_pdbe_chem_comp_rdkit_properties.chi3n 3.294
_pdbe_chem_comp_rdkit_properties.chi4n 1.920
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.270
_pdbe_chem_comp_rdkit_properties.kappa1 9.482
_pdbe_chem_comp_rdkit_properties.kappa2 11.001
_pdbe_chem_comp_rdkit_properties.kappa3 6.941
_pdbe_chem_comp_rdkit_properties.Phi 2.980
#
_pdbe_chem_comp_external_mappings.comp_id V8H
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id V8H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
V8H O7N -8.152 -2.053 -2.677 ETKDGv3 1
V8H C7N -8.165 -1.929 -1.422 ETKDGv3 2
V8H N7N -9.262 -2.486 -0.691 ETKDGv3 3
V8H C3N -7.056 -1.214 -0.732 ETKDGv3 4
V8H C2N -5.965 -0.836 -1.423 ETKDGv3 5
V8H C4N -7.150 -0.950 0.758 ETKDGv3 6
V8H C5N -6.061 -0.071 1.307 ETKDGv3 7
V8H C6N -5.000 0.276 0.582 ETKDGv3 8
V8H N1N -4.877 -0.144 -0.787 ETKDGv3 9
V8H C1D -3.717 0.268 -1.590 ETKDGv3 10
V8H O4D -2.537 0.174 -0.818 ETKDGv3 11
V8H C2D -3.894 1.708 -2.092 ETKDGv3 12
V8H O2D -3.625 1.779 -3.470 ETKDGv3 13
V8H C3D -2.859 2.474 -1.306 ETKDGv3 14
V8H O3D -2.280 3.500 -2.070 ETKDGv3 15
V8H C4D -1.845 1.393 -0.953 ETKDGv3 16
V8H C5D -1.094 1.711 0.343 ETKDGv3 17
V8H O5D -0.161 0.687 0.594 ETKDGv3 18
V8H PN 0.605 1.004 2.086 ETKDGv3 19
V8H O1N 1.157 2.606 2.147 ETKDGv3 20
V8H O2N -0.390 0.789 3.204 ETKDGv3 21
V8H O3 1.905 -0.070 2.315 ETKDGv3 22
V8H PA 2.992 0.142 1.021 ETKDGv3 23
V8H O1A 2.235 -0.226 -0.450 ETKDGv3 24
V8H O2A 3.497 1.568 0.990 ETKDGv3 25
V8H O5B 4.308 -0.914 1.266 ETKDGv3 26
V8H C5B 5.158 -0.837 0.144 ETKDGv3 27
V8H C4B 6.393 -1.717 0.377 ETKDGv3 28
V8H C3B 7.267 -1.192 1.522 ETKDGv3 29
V8H O3B 7.783 -2.279 2.251 ETKDGv3 30
V8H C2B 8.364 -0.467 0.784 ETKDGv3 31
V8H O2B 9.583 -0.512 1.480 ETKDGv3 32
V8H C1B 8.435 -1.229 -0.528 ETKDGv3 33
V8H O4B 7.158 -1.758 -0.811 ETKDGv3 34
V8H O1 8.834 -0.369 -1.560 ETKDGv3 35
V8H H1 -9.310 -2.452 0.350 ETKDGv3 36
V8H H2 -10.036 -2.966 -1.202 ETKDGv3 37
V8H H3 -5.896 -1.049 -2.484 ETKDGv3 38
V8H H4 -8.122 -0.459 0.977 ETKDGv3 39
V8H H5 -6.124 0.252 2.339 ETKDGv3 40
V8H H6 -4.232 0.888 1.037 ETKDGv3 41
V8H H7 -3.604 -0.426 -2.453 ETKDGv3 42
V8H H8 -4.912 2.112 -1.880 ETKDGv3 43
V8H H9 -4.431 1.428 -3.932 ETKDGv3 44
V8H H10 -3.341 2.890 -0.388 ETKDGv3 45
V8H H11 -1.795 4.087 -1.434 ETKDGv3 46
V8H H12 -1.105 1.289 -1.780 ETKDGv3 47
V8H H13 -1.833 1.787 1.175 ETKDGv3 48
V8H H14 -0.571 2.685 0.217 ETKDGv3 49
V8H H15 1.612 2.683 3.023 ETKDGv3 50
V8H H16 1.930 -1.163 -0.347 ETKDGv3 51
V8H H17 5.496 0.209 -0.041 ETKDGv3 52
V8H H18 4.633 -1.217 -0.761 ETKDGv3 53
V8H H19 6.042 -2.748 0.606 ETKDGv3 54
V8H H20 6.713 -0.497 2.197 ETKDGv3 55
V8H H21 8.064 -1.924 3.135 ETKDGv3 56
V8H H22 8.049 0.590 0.611 ETKDGv3 57
V8H H23 10.198 0.105 1.005 ETKDGv3 58
V8H H24 9.159 -2.072 -0.436 ETKDGv3 59
V8H H25 8.951 -0.936 -2.365 ETKDGv3 60
V8H H26 -7.116 -1.920 1.298 ETKDGv3 61
#