data_VHP
#
_chem_comp.id VHP
_chem_comp.name
'N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C29 H46 N4 O7'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-08-13
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 562.698
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VHP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7JQ3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VHP C1 C1 C 0 1 Y N N N N N 44.507 10.094 -17.242 9.538 -1.379 -1.800 C1 VHP 1
VHP C10 C2 C 0 1 N N N N N N 44.930 7.137 -12.351 -0.972 3.134 -0.099 C10 VHP 2
VHP C11 C3 C 0 1 N N S N N N 42.581 4.129 -15.005 1.653 0.567 0.999 C11 VHP 3
VHP C12 C4 C 0 1 N N N N N N 41.821 2.893 -14.703 0.422 -0.034 0.372 C12 VHP 4
VHP C13 C5 C 0 1 N N N N N N 42.502 6.642 -11.909 0.414 4.116 -1.931 C13 VHP 5
VHP C14 C6 C 0 1 N N S N N N 41.521 0.604 -15.157 -1.916 -0.714 0.485 C14 VHP 6
VHP C15 C7 C 0 1 N N N N N N 41.958 0.068 -13.816 -3.173 -0.091 1.033 C15 VHP 7
VHP C16 C8 C 0 1 N N N N N N 43.119 8.218 -13.773 0.836 4.770 0.444 C16 VHP 8
VHP C17 C9 C 0 1 N N S N N N 41.029 -0.642 -11.605 -5.601 0.044 1.189 C17 VHP 9
VHP C18 C10 C 0 1 N N N N N N 43.923 3.715 -12.962 2.813 2.705 1.572 C18 VHP 10
VHP C19 C11 C 0 1 N N N N N N 39.876 0.080 -10.895 -6.755 -0.192 0.212 C19 VHP 11
VHP C2 C12 C 0 1 Y N N N N N 43.162 10.105 -16.883 9.267 -0.072 -1.438 C2 VHP 12
VHP C20 C13 C 0 1 N N S N N N 40.145 1.581 -10.892 -6.474 0.548 -1.098 C20 VHP 13
VHP C21 C14 C 0 1 N N N N N N 41.438 1.845 -10.123 -7.641 0.350 -2.092 C21 VHP 14
VHP C22 C15 C 0 1 N N N N N N 41.082 2.500 -8.784 -7.153 -0.863 -2.914 C22 VHP 15
VHP C24 C16 C 0 1 N N N N N N 39.129 2.361 -10.126 -5.280 -0.058 -1.802 C24 VHP 16
VHP C27 C17 C 0 1 N N N N N N 40.761 -2.145 -11.704 -5.939 -0.591 2.539 C27 VHP 17
VHP C3 C18 C 0 1 Y N N N N N 42.286 9.160 -17.396 8.233 0.202 -0.562 C3 VHP 18
VHP C30 C19 C 0 1 N N R N N N 42.968 4.695 -13.653 1.537 2.093 0.990 C30 VHP 19
VHP C34 C20 C 0 1 N N N N N N 41.891 -0.247 -16.363 -1.870 -2.194 0.869 C34 VHP 20
VHP C35 C21 C 0 1 N N N N N N 41.334 0.251 -17.702 -0.659 -2.856 0.209 C35 VHP 21
VHP C36 C22 C 0 1 N N N N N N 41.513 -0.797 -18.779 -0.542 -4.303 0.692 C36 VHP 22
VHP C37 C23 C 0 1 N N N N N N 39.846 0.436 -17.682 -0.833 -2.838 -1.311 C37 VHP 23
VHP C4 C24 C 0 1 Y N N N N N 42.759 8.203 -18.278 7.470 -0.831 -0.048 C4 VHP 24
VHP C5 C25 C 0 1 Y N N N N N 44.112 8.182 -18.622 7.741 -2.137 -0.411 C5 VHP 25
VHP C6 C26 C 0 1 Y N N N N N 44.997 9.129 -18.115 8.771 -2.410 -1.291 C6 VHP 26
VHP C7 C27 C 0 1 N N N N N N 41.796 7.169 -18.817 6.344 -0.532 0.907 C7 VHP 27
VHP C8 C28 C 0 1 N N N N N N 43.535 6.985 -12.979 0.426 3.623 -0.482 C8 VHP 28
VHP C9 C29 C 0 1 N N N N N N 42.212 5.596 -16.928 4.008 -0.043 0.870 C9 VHP 29
VHP N10 N1 N 0 1 N N N N N N 41.755 4.997 -15.833 2.836 0.163 0.237 N10 VHP 30
VHP N13 N2 N 0 1 N N N N N N 42.214 1.841 -15.399 -0.748 -0.029 1.043 N13 VHP 31
VHP N16 N3 N 0 1 N N N N N N 40.932 -0.148 -12.981 -4.378 -0.562 0.656 N16 VHP 32
VHP N23 N4 N 0 1 N N N N N N 39.691 2.842 -9.026 -5.688 -0.838 -2.817 N23 VHP 33
VHP O26 O1 O 0 1 N N N N N N 37.981 2.531 -10.494 -4.122 0.134 -1.496 O26 VHP 34
VHP O28 O2 O 0 1 N N N N N N 40.554 -2.760 -10.426 -6.252 -1.973 2.351 O28 VHP 35
VHP O29 O3 O 0 1 N N N N N N 43.376 5.481 -17.287 4.064 0.024 2.082 O29 VHP 36
VHP O32 O4 O 0 1 N N N N N N 43.620 5.924 -13.912 1.359 2.549 -0.352 O32 VHP 37
VHP O33 O5 O 0 1 N N N N N N 40.922 2.897 -13.870 0.483 -0.523 -0.736 O33 VHP 38
VHP O38 O6 O 0 1 N N N N N N 43.145 -0.102 -13.542 -3.101 0.835 1.813 O38 VHP 39
VHP O8 O7 O 0 1 N N N N N N 41.303 6.426 -17.708 5.117 -0.322 0.159 O8 VHP 40
VHP H1 H1 H 0 1 N N N N N N 45.175 10.841 -16.839 10.346 -1.593 -2.484 H1 VHP 41
VHP H2 H2 H 0 1 N N N N N N 44.914 7.954 -11.615 -1.679 3.961 -0.170 H2 VHP 42
VHP H3 H3 H 0 1 N N N N N N 45.211 6.198 -11.851 -1.277 2.336 -0.776 H3 VHP 43
VHP H4 H4 H 0 1 N N N N N N 45.663 7.367 -13.138 -0.957 2.757 0.924 H4 VHP 44
VHP H5 H5 H 0 1 N N N N N N 43.498 3.864 -15.552 1.746 0.216 2.027 H5 VHP 45
VHP H6 H6 H 0 1 N N N N N N 42.436 7.467 -11.184 1.410 4.465 -2.204 H6 VHP 46
VHP H7 H7 H 0 1 N N N N N N 41.521 6.491 -12.382 0.121 3.299 -2.590 H7 VHP 47
VHP H8 H8 H 0 1 N N N N N N 42.804 5.721 -11.389 -0.298 4.936 -2.030 H8 VHP 48
VHP H9 H9 H 0 1 N N N N N N 40.433 0.768 -15.149 -1.907 -0.621 -0.601 H9 VHP 49
VHP H10 H10 H 0 1 N N N N N N 43.036 9.080 -13.095 0.769 4.442 1.481 H10 VHP 50
VHP H11 H11 H 0 1 N N N N N N 43.874 8.429 -14.544 1.862 5.066 0.222 H11 VHP 51
VHP H12 H12 H 0 1 N N N N N N 42.146 8.034 -14.253 0.171 5.619 0.287 H12 VHP 52
VHP H13 H13 H 0 1 N N N N N N 42.001 -0.426 -11.137 -5.449 1.115 1.319 H13 VHP 53
VHP H14 H14 H 0 1 N N N N N N 44.211 4.115 -11.979 3.652 2.492 0.910 H14 VHP 54
VHP H15 H15 H 0 1 N N N N N N 43.421 2.745 -12.830 2.688 3.784 1.665 H15 VHP 55
VHP H16 H16 H 0 1 N N N N N N 44.822 3.581 -13.581 3.007 2.275 2.555 H16 VHP 56
VHP H17 H17 H 0 1 N N N N N N 38.934 -0.123 -11.425 -6.850 -1.260 0.013 H17 VHP 57
VHP H18 H18 H 0 1 N N N N N N 39.799 -0.281 -9.859 -7.682 0.180 0.648 H18 VHP 58
VHP H19 H19 H 0 1 N N N N N N 42.797 10.857 -16.199 9.863 0.734 -1.839 H19 VHP 59
VHP H20 H20 H 0 1 N N N N N N 40.230 1.956 -11.922 -6.307 1.608 -0.907 H20 VHP 60
VHP H21 H21 H 0 1 N N N N N N 41.964 0.895 -9.944 -8.567 0.118 -1.566 H21 VHP 61
VHP H22 H22 H 0 1 N N N N N N 42.085 2.518 -10.705 -7.765 1.227 -2.728 H22 VHP 62
VHP H23 H23 H 0 1 N N N N N N 41.188 1.796 -7.945 -7.543 -1.788 -2.489 H23 VHP 63
VHP H24 H24 H 0 1 N N N N N N 41.694 3.394 -8.592 -7.465 -0.765 -3.954 H24 VHP 64
VHP H25 H25 H 0 1 N N N N N N 39.862 -2.302 -12.319 -5.082 -0.501 3.207 H25 VHP 65
VHP H26 H26 H 0 1 N N N N N N 41.624 -2.624 -12.188 -6.796 -0.080 2.977 H26 VHP 66
VHP H27 H27 H 0 1 N N N N N N 41.245 9.170 -17.110 8.021 1.222 -0.279 H27 VHP 67
VHP H28 H28 H 0 1 N N N N N N 42.070 4.838 -13.034 0.681 2.395 1.593 H28 VHP 68
VHP H29 H29 H 0 1 N N N N N N 41.510 -1.265 -16.192 -1.789 -2.286 1.952 H29 VHP 69
VHP H30 H30 H 0 1 N N N N N N 42.988 -0.274 -16.438 -2.782 -2.686 0.530 H30 VHP 70
VHP H31 H31 H 0 1 N N N N N N 41.834 1.186 -17.993 0.245 -2.309 0.478 H31 VHP 71
VHP H32 H32 H 0 1 N N N N N N 42.583 -1.026 -18.894 0.321 -4.775 0.222 H32 VHP 72
VHP H33 H33 H 0 1 N N N N N N 40.971 -1.711 -18.495 -0.418 -4.316 1.775 H33 VHP 73
VHP H34 H34 H 0 1 N N N N N N 41.115 -0.416 -19.731 -1.446 -4.850 0.424 H34 VHP 74
VHP H35 H35 H 0 1 N N N N N N 39.580 1.188 -16.925 -1.737 -3.385 -1.579 H35 VHP 75
VHP H36 H36 H 0 1 N N N N N N 39.505 0.775 -18.671 -0.916 -1.807 -1.655 H36 VHP 76
VHP H37 H37 H 0 1 N N N N N N 39.361 -0.520 -17.435 0.030 -3.309 -1.781 H37 VHP 77
VHP H38 H38 H 0 1 N N N N N N 44.478 7.418 -19.292 7.146 -2.943 -0.009 H38 VHP 78
VHP H39 H39 H 0 1 N N N N N N 46.040 9.115 -18.393 8.983 -3.431 -1.574 H39 VHP 79
VHP H40 H40 H 0 1 N N N N N N 40.963 7.666 -19.337 6.214 -1.372 1.590 H40 VHP 80
VHP H41 H41 H 0 1 N N N N N N 42.317 6.499 -19.517 6.580 0.367 1.477 H41 VHP 81
VHP H42 H42 H 0 1 N N N N N N 40.803 5.149 -15.566 2.777 0.043 -0.724 H42 VHP 82
VHP H43 H43 H 0 1 N N N N N N 42.959 1.902 -16.063 -0.815 0.429 1.895 H43 VHP 83
VHP H44 H44 H 0 1 N N N N N N 40.015 0.046 -13.330 -4.436 -1.303 0.032 H44 VHP 84
VHP H45 H45 H 0 1 N N N N N N 39.178 3.417 -8.389 -5.092 -1.322 -3.410 H45 VHP 85
VHP H46 H46 H 0 1 N N N N N N 40.393 -3.689 -10.543 -6.477 -2.440 3.167 H46 VHP 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VHP C7 C4 SING N N 1
VHP C7 O8 SING N N 2
VHP C36 C35 SING N N 3
VHP C5 C4 DOUB Y N 4
VHP C5 C6 SING Y N 5
VHP C4 C3 SING Y N 6
VHP C6 C1 DOUB Y N 7
VHP O8 C9 SING N N 8
VHP C35 C37 SING N N 9
VHP C35 C34 SING N N 10
VHP C3 C2 DOUB Y N 11
VHP O29 C9 DOUB N N 12
VHP C1 C2 SING Y N 13
VHP C9 N10 SING N N 14
VHP C34 C14 SING N N 15
VHP N10 C11 SING N N 16
VHP N13 C14 SING N N 17
VHP N13 C12 SING N N 18
VHP C14 C15 SING N N 19
VHP C11 C12 SING N N 20
VHP C11 C30 SING N N 21
VHP C12 O33 DOUB N N 22
VHP O32 C30 SING N N 23
VHP O32 C8 SING N N 24
VHP C15 O38 DOUB N N 25
VHP C15 N16 SING N N 26
VHP C16 C8 SING N N 27
VHP C30 C18 SING N N 28
VHP N16 C17 SING N N 29
VHP C8 C10 SING N N 30
VHP C8 C13 SING N N 31
VHP C27 C17 SING N N 32
VHP C27 O28 SING N N 33
VHP C17 C19 SING N N 34
VHP C19 C20 SING N N 35
VHP C20 C24 SING N N 36
VHP C20 C21 SING N N 37
VHP O26 C24 DOUB N N 38
VHP C24 N23 SING N N 39
VHP C21 C22 SING N N 40
VHP N23 C22 SING N N 41
VHP C1 H1 SING N N 42
VHP C10 H2 SING N N 43
VHP C10 H3 SING N N 44
VHP C10 H4 SING N N 45
VHP C11 H5 SING N N 46
VHP C13 H6 SING N N 47
VHP C13 H7 SING N N 48
VHP C13 H8 SING N N 49
VHP C14 H9 SING N N 50
VHP C16 H10 SING N N 51
VHP C16 H11 SING N N 52
VHP C16 H12 SING N N 53
VHP C17 H13 SING N N 54
VHP C18 H14 SING N N 55
VHP C18 H15 SING N N 56
VHP C18 H16 SING N N 57
VHP C19 H17 SING N N 58
VHP C19 H18 SING N N 59
VHP C2 H19 SING N N 60
VHP C20 H20 SING N N 61
VHP C21 H21 SING N N 62
VHP C21 H22 SING N N 63
VHP C22 H23 SING N N 64
VHP C22 H24 SING N N 65
VHP C27 H25 SING N N 66
VHP C27 H26 SING N N 67
VHP C3 H27 SING N N 68
VHP C30 H28 SING N N 69
VHP C34 H29 SING N N 70
VHP C34 H30 SING N N 71
VHP C35 H31 SING N N 72
VHP C36 H32 SING N N 73
VHP C36 H33 SING N N 74
VHP C36 H34 SING N N 75
VHP C37 H35 SING N N 76
VHP C37 H36 SING N N 77
VHP C37 H37 SING N N 78
VHP C5 H38 SING N N 79
VHP C6 H39 SING N N 80
VHP C7 H40 SING N N 81
VHP C7 H41 SING N N 82
VHP N10 H42 SING N N 83
VHP N13 H43 SING N N 84
VHP N16 H44 SING N N 85
VHP N23 H45 SING N N 86
VHP O28 H46 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VHP SMILES ACDLabs 12.01 'c1ccc(cc1)COC(NC(C(=O)NC(C(=O)NC(CC2C(NCC2)=O)CO)CC(C)C)C(C)OC(C)(C)C)=O'
VHP InChI InChI 1.03 'InChI=1S/C29H46N4O7/c1-18(2)14-23(26(36)31-22(16-34)15-21-12-13-30-25(21)35)32-27(37)24(19(3)40-29(4,5)6)33-28(38)39-17-20-10-8-7-9-11-20/h7-11,18-19,21-24,34H,12-17H2,1-6H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t19-,21+,22+,23+,24+/m1/s1'
VHP InChIKey InChI 1.03 AWESOLQTDOBPDY-FFYZIMEISA-N
VHP SMILES_CANONICAL CACTVS 3.385 'CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)[C@@H](C)OC(C)(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O'
VHP SMILES CACTVS 3.385 'CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)[CH](C)OC(C)(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O'
VHP SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'C[C@H]([C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C'
VHP SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCc2ccccc2'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VHP 'SYSTEMATIC NAME' ACDLabs 12.01 'N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide'
VHP 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VHP 'Create component' 2020-08-13 RCSB
VHP 'Modify coordinates' 2020-08-20 RCSB
VHP 'Initial release' 2020-12-23 RCSB
VHP 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id VHP
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C27
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 7JQ3
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VHP C1 C 4.299 -10.530 1
VHP C10 C 5.049 2.769 2
VHP C11 C 6.897 -1.530 3
VHP C12 C 8.196 -0.780 4
VHP C13 C 3.549 0.171 5
VHP C14 C 9.495 1.470 6
VHP C15 C 9.495 2.970 7
VHP C16 C 3.000 2.220 8
VHP C17 C 8.196 5.220 9
VHP C18 C 4.299 -1.530 10
VHP C19 C 6.897 5.970 11
VHP C2 C 3.000 -9.780 12
VHP C20 C 6.897 7.470 13
VHP C21 C 8.111 8.351 14
VHP C22 C 7.647 9.778 15
VHP C24 C 5.684 8.351 16
VHP C27 C 9.495 5.970 17
VHP C3 C 3.000 -8.280 18
VHP C30 C 5.598 -0.780 19
VHP C34 C 10.794 0.720 20
VHP C35 C 12.093 1.470 21
VHP C36 C 13.392 0.720 22
VHP C37 C 12.093 2.970 23
VHP C4 C 4.299 -7.530 24
VHP C5 C 5.598 -8.280 25
VHP C6 C 5.598 -9.780 26
VHP C7 C 4.299 -6.030 27
VHP C8 C 4.299 1.470 28
VHP C9 C 5.598 -3.780 29
VHP N10 N 6.897 -3.030 30
VHP N13 N 8.196 0.720 31
VHP N16 N 8.196 3.720 32
VHP N23 N 6.147 9.778 33
VHP O26 O 4.257 7.888 34
VHP O28 O 9.495 7.470 35
VHP O29 O 4.299 -3.030 36
VHP O32 O 5.598 0.720 37
VHP O33 O 9.495 -1.530 38
VHP O38 O 10.794 3.720 39
VHP O8 O 5.598 -5.280 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VHP C7 C4 SINGLE NONE 1
VHP C7 O8 SINGLE NONE 2
VHP C36 C35 SINGLE NONE 3
VHP C5 C4 DOUBLE NONE 4
VHP C5 C6 SINGLE NONE 5
VHP C4 C3 SINGLE NONE 6
VHP C6 C1 DOUBLE NONE 7
VHP O8 C9 SINGLE NONE 8
VHP C35 C37 SINGLE NONE 9
VHP C35 C34 SINGLE NONE 10
VHP C3 C2 DOUBLE NONE 11
VHP O29 C9 DOUBLE NONE 12
VHP C1 C2 SINGLE NONE 13
VHP C9 N10 SINGLE NONE 14
VHP C14 C34 SINGLE BEGINDASH 15
VHP C11 N10 SINGLE BEGINWEDGE 16
VHP N13 C14 SINGLE NONE 17
VHP N13 C12 SINGLE NONE 18
VHP C14 C15 SINGLE NONE 19
VHP C11 C12 SINGLE NONE 20
VHP C11 C30 SINGLE NONE 21
VHP C12 O33 DOUBLE NONE 22
VHP O32 C30 SINGLE NONE 23
VHP O32 C8 SINGLE NONE 24
VHP C15 O38 DOUBLE NONE 25
VHP C15 N16 SINGLE NONE 26
VHP C16 C8 SINGLE NONE 27
VHP C30 C18 SINGLE BEGINWEDGE 28
VHP N16 C17 SINGLE NONE 29
VHP C8 C10 SINGLE NONE 30
VHP C8 C13 SINGLE NONE 31
VHP C17 C27 SINGLE BEGINWEDGE 32
VHP C27 O28 SINGLE NONE 33
VHP C17 C19 SINGLE NONE 34
VHP C20 C19 SINGLE BEGINWEDGE 35
VHP C20 C24 SINGLE NONE 36
VHP C20 C21 SINGLE NONE 37
VHP O26 C24 DOUBLE NONE 38
VHP C24 N23 SINGLE NONE 39
VHP C21 C22 SINGLE NONE 40
VHP N23 C22 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VHP MurckoScaffold S1 scaffold 'O=C(CNC(=O)CNC(=O)OCc1ccccc1)NCC[C@@H]1CCNC1=O' InChI=1S/C18H24N4O5/c23-15(19-8-6-14-7-9-20-17(14)25)10-21-16(24)11-22-18(26)27-12-13-4-2-1-3-5-13/h1-5,14H,6-12H2,(H,19,23)(H,20,25)(H,21,24)(H,22,26)/t14-/m1/s1 SIZVEDWHQBVTTP-CQSZACIVSA-N
VHP amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
VHP peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
VHP phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VHP C1 S1 1
VHP C11 S1 1
VHP C12 S1 1
VHP C14 S1 1
VHP C15 S1 1
VHP C17 S1 1
VHP C19 S1 1
VHP C2 S1 1
VHP C20 S1 1
VHP C21 S1 1
VHP C22 S1 1
VHP C24 S1 1
VHP C3 S1 1
VHP C4 S1 1
VHP C5 S1 1
VHP C6 S1 1
VHP C7 S1 1
VHP C9 S1 1
VHP N10 S1 1
VHP N13 S1 1
VHP N16 S1 1
VHP N23 S1 1
VHP O26 S1 1
VHP O29 S1 1
VHP O33 S1 1
VHP O38 S1 1
VHP O8 S1 1
VHP N13 F1 1
VHP C12 F1 1
VHP O33 F1 1
VHP C11 F1 1
VHP N16 F1 2
VHP C15 F1 2
VHP O38 F1 2
VHP C14 F1 2
VHP N23 F1 3
VHP C24 F1 3
VHP O26 F1 3
VHP C20 F1 3
VHP O33 F2 1
VHP C12 F2 1
VHP C11 F2 1
VHP N10 F2 1
VHP O38 F2 2
VHP C15 F2 2
VHP C14 F2 2
VHP N13 F2 2
VHP C1 F3 1
VHP C6 F3 1
VHP C5 F3 1
VHP C4 F3 1
VHP C3 F3 1
VHP C2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VHP
_pdbe_chem_comp_rdkit_properties.exactmw 562.337
_pdbe_chem_comp_rdkit_properties.amw 562.708
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 86
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.655
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 301.634
_pdbe_chem_comp_rdkit_properties.tpsa 155.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.964
_pdbe_chem_comp_rdkit_properties.CrippenMR 149.721
_pdbe_chem_comp_rdkit_properties.chi0v 19.147
_pdbe_chem_comp_rdkit_properties.chi1v 9.626
_pdbe_chem_comp_rdkit_properties.chi2v 3.381
_pdbe_chem_comp_rdkit_properties.chi3v 3.381
_pdbe_chem_comp_rdkit_properties.chi4v 1.987
_pdbe_chem_comp_rdkit_properties.chi0n 65.147
_pdbe_chem_comp_rdkit_properties.chi1n 32.323
_pdbe_chem_comp_rdkit_properties.chi2n 3.381
_pdbe_chem_comp_rdkit_properties.chi3n 3.381
_pdbe_chem_comp_rdkit_properties.chi4n 1.987
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.180
_pdbe_chem_comp_rdkit_properties.kappa1 6.724
_pdbe_chem_comp_rdkit_properties.kappa2 15.566
_pdbe_chem_comp_rdkit_properties.kappa3 11.511
_pdbe_chem_comp_rdkit_properties.Phi 2.617
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VHP UniChem PDBe VHP
VHP UniChem SureChEMBL SCHEMBL24690931
VHP UniChem PubChem 155804577
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VHP C1 -10.011 0.432 -2.082 ETKDGv3 1
VHP C10 -1.330 -4.026 1.269 ETKDGv3 2
VHP C11 -1.988 0.640 1.104 ETKDGv3 3
VHP C12 -1.044 0.626 -0.070 ETKDGv3 4
VHP C13 -0.300 -2.867 3.217 ETKDGv3 5
VHP C14 1.177 1.368 -1.073 ETKDGv3 6
VHP C15 2.239 0.423 -0.573 ETKDGv3 7
VHP C16 0.427 -2.319 0.846 ETKDGv3 8
VHP C17 3.917 -0.225 1.248 ETKDGv3 9
VHP C18 -2.395 -0.241 3.435 ETKDGv3 10
VHP C19 5.353 0.364 1.105 ETKDGv3 11
VHP C2 -8.908 0.348 -3.061 ETKDGv3 12
VHP C20 6.373 -0.546 0.381 ETKDGv3 13
VHP C21 5.971 -0.900 -1.068 ETKDGv3 14
VHP C22 5.714 -2.420 -1.111 ETKDGv3 15
VHP C24 6.517 -1.874 1.021 ETKDGv3 16
VHP C27 3.538 -0.452 2.724 ETKDGv3 17
VHP C3 -7.723 0.907 -2.787 ETKDGv3 18
VHP C30 -1.582 -0.433 2.146 ETKDGv3 19
VHP C34 1.731 2.783 -1.376 ETKDGv3 20
VHP C35 2.543 2.942 -2.688 ETKDGv3 21
VHP C36 3.841 2.127 -2.698 ETKDGv3 22
VHP C37 1.706 2.660 -3.944 ETKDGv3 23
VHP C4 -7.513 1.620 -1.502 ETKDGv3 24
VHP C5 -8.515 1.675 -0.606 ETKDGv3 25
VHP C6 -9.823 1.062 -0.915 ETKDGv3 26
VHP C7 -6.168 2.203 -1.181 ETKDGv3 27
VHP C8 -0.768 -2.678 1.754 ETKDGv3 28
VHP C9 -4.086 1.484 -0.052 ETKDGv3 29
VHP N10 -3.371 0.456 0.644 ETKDGv3 30
VHP N13 0.123 1.462 -0.059 ETKDGv3 31
VHP N16 2.943 0.696 0.651 ETKDGv3 32
VHP N23 6.137 -2.937 0.176 ETKDGv3 33
VHP O26 6.968 -2.056 2.182 ETKDGv3 34
VHP O28 4.343 -1.442 3.304 ETKDGv3 35
VHP O29 -3.541 2.600 -0.275 ETKDGv3 36
VHP O32 -1.833 -1.735 1.623 ETKDGv3 37
VHP O33 -1.270 -0.142 -1.045 ETKDGv3 38
VHP O38 2.462 -0.640 -1.212 ETKDGv3 39
VHP O8 -5.393 1.236 -0.481 ETKDGv3 40
VHP H1 -10.968 -0.019 -2.308 ETKDGv3 41
VHP H2 -0.559 -4.826 1.318 ETKDGv3 42
VHP H3 -2.195 -4.331 1.897 ETKDGv3 43
VHP H4 -1.684 -3.942 0.219 ETKDGv3 44
VHP H5 -1.912 1.637 1.594 ETKDGv3 45
VHP H6 0.212 -1.967 3.613 ETKDGv3 46
VHP H7 0.426 -3.706 3.287 ETKDGv3 47
VHP H8 -1.165 -3.108 3.871 ETKDGv3 48
VHP H9 0.739 0.958 -2.007 ETKDGv3 49
VHP H10 1.209 -3.107 0.897 ETKDGv3 50
VHP H11 0.900 -1.367 1.149 ETKDGv3 51
VHP H12 0.099 -2.226 -0.210 ETKDGv3 52
VHP H13 3.848 -1.212 0.743 ETKDGv3 53
VHP H14 -2.267 0.792 3.823 ETKDGv3 54
VHP H15 -3.475 -0.426 3.251 ETKDGv3 55
VHP H16 -2.052 -0.940 4.222 ETKDGv3 56
VHP H17 5.313 1.327 0.549 ETKDGv3 57
VHP H18 5.771 0.622 2.103 ETKDGv3 58
VHP H19 -9.060 -0.170 -3.999 ETKDGv3 59
VHP H20 7.364 -0.041 0.377 ETKDGv3 60
VHP H21 5.076 -0.340 -1.406 ETKDGv3 61
VHP H22 6.807 -0.648 -1.756 ETKDGv3 62
VHP H23 6.301 -2.900 -1.923 ETKDGv3 63
VHP H24 4.633 -2.630 -1.257 ETKDGv3 64
VHP H25 3.664 0.492 3.296 ETKDGv3 65
VHP H26 2.467 -0.742 2.806 ETKDGv3 66
VHP H27 -6.917 0.836 -3.507 ETKDGv3 67
VHP H28 -0.517 -0.250 2.404 ETKDGv3 68
VHP H29 0.868 3.484 -1.437 ETKDGv3 69
VHP H30 2.347 3.145 -0.526 ETKDGv3 70
VHP H31 2.840 4.014 -2.737 ETKDGv3 71
VHP H32 3.633 1.051 -2.861 ETKDGv3 72
VHP H33 4.392 2.259 -1.743 ETKDGv3 73
VHP H34 4.496 2.476 -3.525 ETKDGv3 74
VHP H35 1.497 1.575 -4.056 ETKDGv3 75
VHP H36 2.259 2.997 -4.846 ETKDGv3 76
VHP H37 0.744 3.213 -3.902 ETKDGv3 77
VHP H38 -8.376 2.166 0.350 ETKDGv3 78
VHP H39 -10.629 1.120 -0.194 ETKDGv3 79
VHP H40 -5.647 2.490 -2.121 ETKDGv3 80
VHP H41 -6.282 3.117 -0.558 ETKDGv3 81
VHP H42 -3.863 -0.452 0.801 ETKDGv3 82
VHP H43 0.299 2.054 0.784 ETKDGv3 83
VHP H44 2.771 1.603 1.139 ETKDGv3 84
VHP H45 6.123 -3.944 0.450 ETKDGv3 85
VHP H46 4.011 -2.314 2.962 ETKDGv3 86
#