data_VKG
#
_chem_comp.id VKG
_chem_comp.name
"N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H24 F I N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-08-21
_chem_comp.pdbx_modified_date 2020-09-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 666.463
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VKG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7JV1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKG C01 C1 C 0 1 N N N N N N -20.641 48.024 6.212 -4.881 3.931 0.517 C01 VKG 1
VKG C07 C2 C 0 1 Y N N N N N -18.872 47.009 8.941 -5.278 0.316 -0.911 C07 VKG 2
VKG C08 C3 C 0 1 Y N N N N N -20.046 46.668 9.619 -6.227 -0.517 -0.331 C08 VKG 3
VKG C09 C4 C 0 1 Y N N N N N -20.340 45.335 9.901 -5.835 -1.695 0.275 C09 VKG 4
VKG C10 C5 C 0 1 Y N N N N N -19.445 44.347 9.490 -4.500 -2.049 0.306 C10 VKG 5
VKG C11 C6 C 0 1 Y N N N N N -18.267 44.680 8.804 -3.547 -1.220 -0.273 C11 VKG 6
VKG C13 C7 C 0 1 N N N N N N -17.783 43.034 7.300 -1.677 -2.325 -1.234 C13 VKG 7
VKG C16 C8 C 0 1 N N N N N N -17.450 41.355 5.569 0.088 -3.516 -2.389 C16 VKG 8
VKG C17 C9 C 0 1 N N N N N N -16.292 41.720 4.626 -0.511 -4.914 -2.556 C17 VKG 9
VKG C18 C10 C 0 1 N N N N N N -17.726 41.775 4.120 0.928 -4.752 -2.060 C18 VKG 10
VKG C19 C11 C 0 1 N N N N N N -16.132 41.412 7.624 0.474 -2.355 -0.290 C19 VKG 11
VKG C21 C12 C 0 1 N N N N N N -15.786 41.984 8.891 -0.029 -1.544 0.822 C21 VKG 12
VKG C22 C13 C 0 1 N N N N N N -14.734 41.366 9.654 0.788 -1.138 1.872 C22 VKG 13
VKG C24 C14 C 0 1 Y N N N N N -14.400 38.776 9.502 3.055 -0.707 1.225 C24 VKG 14
VKG C25 C15 C 0 1 Y N N N N N -14.238 38.377 10.829 2.645 0.373 0.456 C25 VKG 15
VKG C26 C16 C 0 1 Y N N N N N -14.553 37.091 11.236 3.582 1.150 -0.198 C26 VKG 16
VKG C27 C17 C 0 1 Y N N N N N -15.028 36.171 10.317 4.928 0.853 -0.088 C27 VKG 17
VKG C29 C18 C 0 1 Y N N N N N -15.193 36.544 8.984 5.342 -0.223 0.678 C29 VKG 18
VKG C30 C19 C 0 1 Y N N N N N -14.878 37.845 8.574 4.410 -1.004 1.335 C30 VKG 19
VKG C33 C20 C 0 1 N N N N N N -13.319 41.325 11.670 1.132 0.040 3.982 C33 VKG 20
VKG C34 C21 C 0 1 N N N N N N -15.024 42.987 11.338 -1.029 -0.019 2.882 C34 VKG 21
VKG C36 C22 C 0 1 N N N N N N -16.063 43.628 10.636 -1.890 -0.403 1.848 C36 VKG 22
VKG C37 C23 C 0 1 N N N N N N -16.644 44.857 11.370 -3.337 0.016 1.867 C37 VKG 23
VKG C38 C24 C 0 1 N N N N N N -16.476 43.097 9.326 -1.398 -1.167 0.811 C38 VKG 24
VKG C39 C25 C 0 1 Y N N N N N -17.964 46.022 8.517 -3.936 -0.037 -0.882 C39 VKG 25
VKG F31 F1 F 0 1 N N N N N N -15.049 38.192 7.263 4.814 -2.055 2.082 F31 VKG 26
VKG I28 I1 I 0 1 N N N N N N -15.484 34.225 10.992 6.343 2.034 -1.083 I28 VKG 27
VKG N02 N1 N 0 1 N N N N N N -21.137 48.730 7.400 -6.059 3.063 0.600 N02 VKG 28
VKG N06 N2 N 0 1 N N N N N N -18.641 48.434 8.683 -5.675 1.505 -1.529 N06 VKG 29
VKG N12 N3 N 0 1 N N N N N N -17.484 43.622 8.476 -2.193 -1.580 -0.241 N12 VKG 30
VKG N15 N4 N 0 1 N N N N N N -17.110 41.945 6.881 -0.390 -2.705 -1.267 N15 VKG 31
VKG N23 N5 N 0 1 N N N N N N -14.042 40.168 9.106 2.108 -1.493 1.893 N23 VKG 32
VKG N32 N6 N 0 1 N N N N N N -14.396 41.900 10.846 0.265 -0.384 2.880 N32 VKG 33
VKG O04 O1 O 0 1 N N N N N N -20.690 49.674 9.814 -7.849 1.670 -0.372 O04 VKG 34
VKG O05 O2 O 0 1 N N N N N N -19.654 50.798 8.144 -6.937 3.623 -1.638 O05 VKG 35
VKG O14 O3 O 0 1 N N N N N N -18.646 43.492 6.621 -2.409 -2.674 -2.140 O14 VKG 36
VKG O20 O4 O 0 1 N N N N N N -15.539 40.453 7.252 1.639 -2.705 -0.331 O20 VKG 37
VKG O35 O5 O 0 1 N N N N N N -14.691 43.421 12.399 -1.459 0.660 3.800 O35 VKG 38
VKG S03 S1 S 0 1 N N N N N N -20.035 49.436 8.522 -6.771 2.498 -0.785 S03 VKG 39
VKG H1 H1 H 0 1 N N N N N N -21.493 47.648 5.626 -4.556 4.200 1.522 H1 VKG 40
VKG H2 H2 H 0 1 N N N N N N -20.048 48.716 5.595 -4.077 3.404 0.003 H2 VKG 41
VKG H3 H3 H 0 1 N N N N N N -20.010 47.179 6.525 -5.135 4.835 -0.037 H3 VKG 42
VKG H4 H4 H 0 1 N N N N N N -20.731 47.444 9.927 -7.271 -0.243 -0.353 H4 VKG 43
VKG H5 H5 H 0 1 N N N N N N -21.245 45.072 10.428 -6.574 -2.340 0.726 H5 VKG 44
VKG H6 H6 H 0 1 N N N N N N -19.662 43.311 9.703 -4.197 -2.970 0.781 H6 VKG 45
VKG H7 H7 H 0 1 N N N N N N -17.521 40.260 5.652 0.338 -2.965 -3.296 H7 VKG 46
VKG H8 H8 H 0 1 N N N N N N -15.611 40.936 4.263 -1.261 -5.230 -1.831 H8 VKG 47
VKG H9 H9 H 0 1 N N N N N N -15.728 42.652 4.783 -0.655 -5.282 -3.572 H9 VKG 48
VKG H10 H10 H 0 1 N N N N N N -18.197 42.747 3.910 1.730 -5.014 -2.750 H10 VKG 49
VKG H11 H11 H 0 1 N N N N N N -18.080 41.031 3.391 1.125 -4.961 -1.008 H11 VKG 50
VKG H12 H12 H 0 1 N N N N N N -13.860 39.084 11.553 1.594 0.605 0.369 H12 VKG 51
VKG H13 H13 H 0 1 N N N N N N -14.428 36.806 12.270 3.262 1.990 -0.796 H13 VKG 52
VKG H14 H14 H 0 1 N N N N N N -15.565 35.828 8.266 6.394 -0.453 0.762 H14 VKG 53
VKG H15 H15 H 0 1 N N N N N N -13.211 41.911 12.594 1.516 1.040 3.779 H15 VKG 54
VKG H16 H16 H 0 1 N N N N N N -13.568 40.284 11.923 0.560 0.052 4.910 H16 VKG 55
VKG H17 H17 H 0 1 N N N N N N -12.374 41.350 11.107 1.965 -0.656 4.078 H17 VKG 56
VKG H18 H18 H 0 1 N N N N N N -16.122 44.993 12.328 -3.554 0.531 2.803 H18 VKG 57
VKG H19 H19 H 0 1 N N N N N N -16.508 45.754 10.748 -3.532 0.687 1.030 H19 VKG 58
VKG H20 H20 H 0 1 N N N N N N -17.717 44.699 11.556 -3.972 -0.865 1.782 H20 VKG 59
VKG H21 H21 H 0 1 N N N N N N -17.061 46.287 7.987 -3.197 0.608 -1.333 H21 VKG 60
VKG H22 H22 H 0 1 N N N N N N -21.723 49.470 7.070 -6.421 2.819 1.466 H22 VKG 61
VKG H23 H23 H 0 1 N N N N N N -18.118 48.506 7.834 -5.309 1.747 -2.394 H23 VKG 62
VKG H24 H24 H 0 1 N N N N N N -13.305 40.302 8.444 2.389 -2.289 2.372 H24 VKG 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKG C18 C17 SING N N 1
VKG C18 C16 SING N N 2
VKG C17 C16 SING N N 3
VKG C16 N15 SING N N 4
VKG C01 N02 SING N N 5
VKG O14 C13 DOUB N N 6
VKG N15 C13 SING N N 7
VKG N15 C19 SING N N 8
VKG O20 C19 DOUB N N 9
VKG F31 C30 SING N N 10
VKG C13 N12 SING N N 11
VKG N02 S03 SING N N 12
VKG C19 C21 SING N N 13
VKG O05 S03 DOUB N N 14
VKG N12 C11 SING N N 15
VKG N12 C38 SING N N 16
VKG C39 C11 DOUB Y N 17
VKG C39 C07 SING Y N 18
VKG S03 N06 SING N N 19
VKG S03 O04 DOUB N N 20
VKG C30 C29 DOUB Y N 21
VKG C30 C24 SING Y N 22
VKG N06 C07 SING N N 23
VKG C11 C10 SING Y N 24
VKG C21 C38 SING N N 25
VKG C21 C22 DOUB N N 26
VKG C07 C08 DOUB Y N 27
VKG C29 C27 SING Y N 28
VKG N23 C24 SING N N 29
VKG N23 C22 SING N N 30
VKG C38 C36 DOUB N N 31
VKG C10 C09 DOUB Y N 32
VKG C24 C25 DOUB Y N 33
VKG C08 C09 SING Y N 34
VKG C22 N32 SING N N 35
VKG C27 I28 SING N N 36
VKG C27 C26 DOUB Y N 37
VKG C36 C34 SING N N 38
VKG C36 C37 SING N N 39
VKG C25 C26 SING Y N 40
VKG N32 C34 SING N N 41
VKG N32 C33 SING N N 42
VKG C34 O35 DOUB N N 43
VKG C01 H1 SING N N 44
VKG C01 H2 SING N N 45
VKG C01 H3 SING N N 46
VKG C08 H4 SING N N 47
VKG C09 H5 SING N N 48
VKG C10 H6 SING N N 49
VKG C16 H7 SING N N 50
VKG C17 H8 SING N N 51
VKG C17 H9 SING N N 52
VKG C18 H10 SING N N 53
VKG C18 H11 SING N N 54
VKG C25 H12 SING N N 55
VKG C26 H13 SING N N 56
VKG C29 H14 SING N N 57
VKG C33 H15 SING N N 58
VKG C33 H16 SING N N 59
VKG C33 H17 SING N N 60
VKG C37 H18 SING N N 61
VKG C37 H19 SING N N 62
VKG C37 H20 SING N N 63
VKG C39 H21 SING N N 64
VKG N02 H22 SING N N 65
VKG N06 H23 SING N N 66
VKG N23 H24 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKG SMILES ACDLabs 12.01 CNS(Nc1cccc(c1)N5C(N(C2CC2)C(C=3C5=C(C(=O)N(C=3Nc4ccc(I)cc4F)C)C)=O)=O)(=O)=O
VKG InChI InChI 1.03 InChI=1S/C25H24FIN6O5S/c1-13-21-20(22(31(3)23(13)34)29-19-10-7-14(27)11-18(19)26)24(35)33(16-8-9-16)25(36)32(21)17-6-4-5-15(12-17)30-39(37,38)28-2/h4-7,10-12,16,28-30H,8-9H2,1-3H3
VKG InChIKey InChI 1.03 DNNMBAWCLGMMRJ-UHFFFAOYSA-N
VKG SMILES_CANONICAL CACTVS 3.385 CN[S](=O)(=O)Nc1cccc(c1)N2C(=O)N(C3CC3)C(=O)C4=C(Nc5ccc(I)cc5F)N(C)C(=O)C(=C24)C
VKG SMILES CACTVS 3.385 CN[S](=O)(=O)Nc1cccc(c1)N2C(=O)N(C3CC3)C(=O)C4=C(Nc5ccc(I)cc5F)N(C)C(=O)C(=C24)C
VKG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1=C2C(=C(N(C1=O)C)Nc3ccc(cc3F)I)C(=O)N(C(=O)N2c4cccc(c4)NS(=O)(=O)NC)C5CC5
VKG SMILES "OpenEye OEToolkits" 2.0.7 CC1=C2C(=C(N(C1=O)C)Nc3ccc(cc3F)I)C(=O)N(C(=O)N2c4cccc(c4)NS(=O)(=O)NC)C5CC5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VKG "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)-N'-methylsulfuric diamide"
VKG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 3-cyclopropyl-5-[(2-fluoranyl-4-iodanyl-phenyl)amino]-6,8-dimethyl-1-[3-(methylsulfamoylamino)phenyl]pyrido[4,3-d]pyrimidine-2,4,7-trione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKG 'Create component' 2020-08-21 RCSB
VKG 'Initial release' 2020-09-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VKG C01 C 14.681 7.931 1
VKG C07 C 12.083 3.431 2
VKG C08 C 10.784 4.181 3
VKG C09 C 9.485 3.431 4
VKG C10 C 9.485 1.931 5
VKG C11 C 10.784 1.181 6
VKG C13 C 12.083 -1.069 7
VKG C16 C 13.382 -3.319 8
VKG C17 C 14.882 -3.319 9
VKG C18 C 14.132 -4.618 10
VKG C19 C 10.784 -3.319 11
VKG C21 C 9.485 -2.569 12
VKG C22 C 8.144 -3.371 13
VKG C24 C 6.871 -5.636 14
VKG C25 C 5.563 -4.901 15
VKG C26 C 4.273 -5.666 16
VKG C27 C 4.290 -7.166 17
VKG C29 C 5.598 -7.901 18
VKG C30 C 6.888 -7.136 19
VKG C33 C 5.489 -3.355 20
VKG C34 C 6.785 -1.038 21
VKG C36 C 8.144 -0.267 22
VKG C37 C 8.161 1.233 23
VKG C38 C 9.485 -1.069 24
VKG C39 C 12.083 1.931 25
VKG F31 F 8.196 -7.871 26
VKG I28 I 3.000 -7.931 27
VKG N02 N 13.382 7.181 28
VKG N06 N 13.382 4.181 29
VKG N12 N 10.784 -0.319 30
VKG N15 N 12.083 -2.569 31
VKG N23 N 8.161 -4.871 32
VKG N32 N 6.785 -2.600 33
VKG O04 O 11.882 5.681 34
VKG O05 O 14.882 5.681 35
VKG O14 O 13.382 -0.319 36
VKG O20 O 10.784 -4.819 37
VKG O35 O 5.489 -0.283 38
VKG S03 S 13.382 5.681 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VKG C18 C17 SINGLE NONE 1
VKG C18 C16 SINGLE NONE 2
VKG C17 C16 SINGLE NONE 3
VKG C16 N15 SINGLE NONE 4
VKG C01 N02 SINGLE NONE 5
VKG O14 C13 DOUBLE NONE 6
VKG N15 C13 SINGLE NONE 7
VKG N15 C19 SINGLE NONE 8
VKG O20 C19 DOUBLE NONE 9
VKG F31 C30 SINGLE NONE 10
VKG C13 N12 SINGLE NONE 11
VKG N02 S03 SINGLE NONE 12
VKG C19 C21 SINGLE NONE 13
VKG O05 S03 DOUBLE NONE 14
VKG N12 C11 SINGLE NONE 15
VKG N12 C38 SINGLE NONE 16
VKG C39 C11 SINGLE NONE 17
VKG C39 C07 DOUBLE NONE 18
VKG S03 N06 SINGLE NONE 19
VKG S03 O04 DOUBLE NONE 20
VKG C30 C29 DOUBLE NONE 21
VKG C30 C24 SINGLE NONE 22
VKG N06 C07 SINGLE NONE 23
VKG C11 C10 DOUBLE NONE 24
VKG C21 C38 SINGLE NONE 25
VKG C21 C22 DOUBLE NONE 26
VKG C07 C08 SINGLE NONE 27
VKG C29 C27 SINGLE NONE 28
VKG N23 C24 SINGLE NONE 29
VKG N23 C22 SINGLE NONE 30
VKG C38 C36 DOUBLE NONE 31
VKG C10 C09 SINGLE NONE 32
VKG C24 C25 DOUBLE NONE 33
VKG C08 C09 DOUBLE NONE 34
VKG C22 N32 SINGLE NONE 35
VKG C27 I28 SINGLE NONE 36
VKG C27 C26 DOUBLE NONE 37
VKG C36 C34 SINGLE NONE 38
VKG C36 C37 SINGLE NONE 39
VKG C25 C26 SINGLE NONE 40
VKG N32 C34 SINGLE NONE 41
VKG N32 C33 SINGLE NONE 42
VKG C34 O35 DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VKG MurckoScaffold S1 scaffold 'O=c1cc2c(c(Nc3ccccc3)[nH]1)c(=O)n(C1CC1)c(=O)n2-c1ccccc1' InChI=1S/C22H18N4O3/c27-18-13-17-19(20(24-18)23-14-7-3-1-4-8-14)21(28)26(16-11-12-16)22(29)25(17)15-9-5-2-6-10-15/h1-10,13,16H,11-12H2,(H2,23,24,27) BGGUHUZUBRVFMH-UHFFFAOYSA-N
VKG cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
VKG phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VKG pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
VKG pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VKG C07 S1 1
VKG C08 S1 1
VKG C09 S1 1
VKG C10 S1 1
VKG C11 S1 1
VKG C13 S1 1
VKG C16 S1 1
VKG C17 S1 1
VKG C18 S1 1
VKG C19 S1 1
VKG C21 S1 1
VKG C22 S1 1
VKG C24 S1 1
VKG C25 S1 1
VKG C26 S1 1
VKG C27 S1 1
VKG C29 S1 1
VKG C30 S1 1
VKG C34 S1 1
VKG C36 S1 1
VKG C38 S1 1
VKG C39 S1 1
VKG N12 S1 1
VKG N15 S1 1
VKG N23 S1 1
VKG N32 S1 1
VKG O14 S1 1
VKG O20 S1 1
VKG O35 S1 1
VKG C16 F1 1
VKG C18 F1 1
VKG C17 F1 1
VKG C07 F2 1
VKG C39 F2 1
VKG C11 F2 1
VKG C10 F2 1
VKG C09 F2 1
VKG C08 F2 1
VKG C24 F2 2
VKG C30 F2 2
VKG C29 F2 2
VKG C27 F2 2
VKG C26 F2 2
VKG C25 F2 2
VKG C22 F3 1
VKG C21 F3 1
VKG C38 F3 1
VKG C36 F3 1
VKG C34 F3 1
VKG N32 F3 1
VKG C21 F4 1
VKG C19 F4 1
VKG N15 F4 1
VKG C13 F4 1
VKG N12 F4 1
VKG C38 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VKG
_pdbe_chem_comp_rdkit_properties.exactmw 666.056
_pdbe_chem_comp_rdkit_properties.amw 666.473
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.240
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 269.051
_pdbe_chem_comp_rdkit_properties.tpsa 136.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.743
_pdbe_chem_comp_rdkit_properties.CrippenMR 150.775
_pdbe_chem_comp_rdkit_properties.chi0v 21.363
_pdbe_chem_comp_rdkit_properties.chi1v 12.321
_pdbe_chem_comp_rdkit_properties.chi2v 6.073
_pdbe_chem_comp_rdkit_properties.chi3v 6.073
_pdbe_chem_comp_rdkit_properties.chi4v 4.008
_pdbe_chem_comp_rdkit_properties.chi0n 42.389
_pdbe_chem_comp_rdkit_properties.chi1n 21.687
_pdbe_chem_comp_rdkit_properties.chi2n 4.889
_pdbe_chem_comp_rdkit_properties.chi3n 4.889
_pdbe_chem_comp_rdkit_properties.chi4n 3.273
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.500
_pdbe_chem_comp_rdkit_properties.kappa1 10.479
_pdbe_chem_comp_rdkit_properties.kappa2 9.912
_pdbe_chem_comp_rdkit_properties.kappa3 4.870
_pdbe_chem_comp_rdkit_properties.Phi 2.663
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VKG UniChem PDBe VKG
VKG UniChem SureChEMBL SCHEMBL24146294
VKG UniChem PubChem 154700547
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VKG C01 6.914 0.030 -2.180 ETKDGv3 1
VKG C07 4.225 0.500 0.390 ETKDGv3 2
VKG C08 3.933 1.820 -0.232 ETKDGv3 3
VKG C09 2.672 2.176 -0.501 ETKDGv3 4
VKG C10 1.559 1.263 -0.185 ETKDGv3 5
VKG C11 1.802 0.068 0.379 ETKDGv3 6
VKG C13 0.640 -2.053 -0.054 ETKDGv3 7
VKG C16 -0.660 -3.629 -1.525 ETKDGv3 8
VKG C17 -1.242 -3.341 -2.904 ETKDGv3 9
VKG C18 0.253 -3.537 -2.743 ETKDGv3 10
VKG C19 -1.827 -1.811 -0.224 ETKDGv3 11
VKG C21 -1.804 -0.772 0.851 ETKDGv3 12
VKG C22 -2.940 -0.226 1.361 ETKDGv3 13
VKG C24 -4.990 0.298 -0.022 ETKDGv3 14
VKG C25 -6.280 0.010 -0.268 ETKDGv3 15
VKG C26 -7.096 0.888 -1.131 ETKDGv3 16
VKG C27 -6.553 1.978 -1.685 ETKDGv3 17
VKG C29 -5.134 2.300 -1.437 ETKDGv3 18
VKG C30 -4.387 1.510 -0.655 ETKDGv3 19
VKG C33 -4.097 1.327 2.985 ETKDGv3 20
VKG C34 -1.596 1.037 3.029 ETKDGv3 21
VKG C36 -0.374 0.417 2.485 ETKDGv3 22
VKG C37 0.942 0.689 3.175 ETKDGv3 23
VKG C38 -0.466 -0.361 1.377 ETKDGv3 24
VKG C39 3.202 -0.324 0.677 ETKDGv3 25
VKG F31 -3.081 1.824 -0.468 ETKDGv3 26
VKG I28 -7.713 3.235 -2.918 ETKDGv3 27
VKG N02 6.987 1.300 -1.462 ETKDGv3 28
VKG N06 5.570 0.090 0.694 ETKDGv3 29
VKG N12 0.716 -0.829 0.687 ETKDGv3 30
VKG N15 -0.609 -2.460 -0.636 ETKDGv3 31
VKG N23 -4.225 -0.576 0.829 ETKDGv3 32
VKG N32 -2.874 0.696 2.471 ETKDGv3 33
VKG O04 6.979 2.310 0.991 ETKDGv3 34
VKG O05 8.207 0.227 0.630 ETKDGv3 35
VKG O14 1.678 -2.748 -0.230 ETKDGv3 36
VKG O20 -2.914 -2.151 -0.766 ETKDGv3 37
VKG O35 -1.513 1.875 3.969 ETKDGv3 38
VKG S03 6.976 1.003 0.250 ETKDGv3 39
VKG H1 6.958 0.223 -3.272 ETKDGv3 40
VKG H2 7.764 -0.632 -1.904 ETKDGv3 41
VKG H3 5.952 -0.481 -1.962 ETKDGv3 42
VKG H4 4.728 2.512 -0.469 ETKDGv3 43
VKG H5 2.465 3.138 -0.952 ETKDGv3 44
VKG H6 0.545 1.566 -0.419 ETKDGv3 45
VKG H7 -0.841 -4.633 -1.087 ETKDGv3 46
VKG H8 -1.529 -2.287 -3.108 ETKDGv3 47
VKG H9 -1.760 -4.203 -3.375 ETKDGv3 48
VKG H10 0.620 -4.515 -3.118 ETKDGv3 49
VKG H11 0.834 -2.596 -2.855 ETKDGv3 50
VKG H12 -6.743 -0.864 0.172 ETKDGv3 51
VKG H13 -8.135 0.643 -1.311 ETKDGv3 52
VKG H14 -4.695 3.176 -1.897 ETKDGv3 53
VKG H15 -4.365 2.194 2.347 ETKDGv3 54
VKG H16 -3.964 1.675 4.031 ETKDGv3 55
VKG H17 -4.937 0.602 2.995 ETKDGv3 56
VKG H18 1.434 1.574 2.719 ETKDGv3 57
VKG H19 0.788 0.893 4.255 ETKDGv3 58
VKG H20 1.613 -0.193 3.116 ETKDGv3 59
VKG H21 3.392 -1.281 1.147 ETKDGv3 60
VKG H22 7.905 1.744 -1.691 ETKDGv3 61
VKG H23 5.732 -0.826 1.172 ETKDGv3 62
VKG H24 -4.641 -1.482 1.145 ETKDGv3 63
#