data_VO4
#
_chem_comp.id VO4
_chem_comp.name "VANADATE ION"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAI
_chem_comp.formula "O4 V"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -3
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 114.939
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VO4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3RNT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VO4 V V V 0 1 N N N N N N 19.689 13.619 1.453 0.000 0.000 0.000 V VO4 1
VO4 O1 O1 O 0 1 N N N N N N 20.427 13.467 -0.104 0.000 -1.450 -1.025 O1 VO4 2
VO4 O2 O2 O -1 1 N N N N N N 18.661 12.468 2.157 0.000 1.450 -1.025 O2 VO4 3
VO4 O3 O3 O -1 1 N N N N N N 21.002 14.443 2.094 -1.450 0.000 1.025 O3 VO4 4
VO4 O4 O4 O -1 1 N N N N N N 18.348 14.639 1.032 1.450 0.000 1.025 O4 VO4 5
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VO4 V O1 DOUB N N 1
VO4 V O2 SING N N 2
VO4 V O3 SING N N 3
VO4 V O4 SING N N 4
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VO4 SMILES ACDLabs 10.04 "[O-][V]([O-])([O-])=O"
VO4 SMILES_CANONICAL CACTVS 3.341 "[O-][V]([O-])([O-])=O"
VO4 SMILES CACTVS 3.341 "[O-][V]([O-])([O-])=O"
VO4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[O-][V](=O)([O-])[O-]"
VO4 SMILES "OpenEye OEToolkits" 1.5.0 "[O-][V](=O)([O-])[O-]"
VO4 InChI InChI 1.03 InChI=1S/4O.V/q;3*-1;
VO4 InChIKey InChI 1.03 LSGOVYNHVSXFFJ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VO4 "SYSTEMATIC NAME" ACDLabs 10.04 trioxido(oxo)vanadium
VO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 trioxido-oxo-vanadium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VO4 'Create component' 1999-07-08 RCSB
VO4 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VO4 V V 4.299 0.000 1
VO4 O1 O 5.598 0.750 2
VO4 O2 O 3.000 -0.750 3
VO4 O3 O 3.549 1.299 4
VO4 O4 O 5.049 -1.299 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VO4 V O1 DOUBLE NONE 1
VO4 V O2 SINGLE NONE 2
VO4 V O3 SINGLE NONE 3
VO4 V O4 SINGLE NONE 4
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id VO4
_pdbe_chem_comp_rdkit_properties.exactmw 113.928
_pdbe_chem_comp_rdkit_properties.amw 114.938
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 5
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 31.633
_pdbe_chem_comp_rdkit_properties.tpsa 86.250
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.688
_pdbe_chem_comp_rdkit_properties.CrippenMR 0.686
_pdbe_chem_comp_rdkit_properties.chi0v 3.477
_pdbe_chem_comp_rdkit_properties.chi1v 3.011
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 2.080
_pdbe_chem_comp_rdkit_properties.chi1n 0.730
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.264
_pdbe_chem_comp_rdkit_properties.kappa1 5.264
_pdbe_chem_comp_rdkit_properties.kappa2 1.158
_pdbe_chem_comp_rdkit_properties.kappa3 312.750
_pdbe_chem_comp_rdkit_properties.Phi 1.219
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VO4 UniChem PDBe VO4
VO4 UniChem ChEBI 46442
VO4 UniChem 'PubChem TPHARMA' 15170546
VO4 UniChem PubChem 61672
VO4 UniChem BRENDA 1328
VO4 UniChem BRENDA 136055
VO4 UniChem BRENDA 233
VO4 UniChem BRENDA 4578
VO4 UniChem BRENDA 8367
VO4 UniChem BindingDb 50391109
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VO4 V 0.005 0.006 0.041 ETKDGv3 1
VO4 O1 0.229 0.249 1.767 ETKDGv3 2
VO4 O2 1.631 -0.794 -0.724 ETKDGv3 3
VO4 O3 -0.344 1.737 -0.825 ETKDGv3 4
VO4 O4 -1.521 -1.198 -0.258 ETKDGv3 5
#