data_VVT
#
_chem_comp.id VVT
_chem_comp.name 6-chloro-3-phenyl-4-(pyridin-4-yl)pyridazine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H10 Cl N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-05-15
_chem_comp.pdbx_modified_date 2016-07-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 267.713
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VVT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4ZTH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VVT CL7 CL1 CL 0 0 N N N N N N -0.528 4.283 22.380 4.666 -0.094 0.049 CL7 VVT 1
VVT C3 C1 C 0 1 Y N N N N N -1.611 3.320 21.314 2.972 0.287 0.009 C3 VVT 2
VVT N2 N1 N 0 1 Y N N N N N -2.110 3.868 20.210 2.582 1.544 -0.094 N2 VVT 3
VVT N1 N2 N 0 1 Y N N N N N -2.934 3.113 19.386 1.345 1.883 -0.134 N1 VVT 4
VVT C4 C2 C 0 1 Y N N N N N -1.907 2.008 21.618 2.033 -0.731 0.078 C4 VVT 5
VVT C5 C3 C 0 1 Y N N N N N -2.759 1.251 20.823 0.681 -0.377 0.041 C5 VVT 6
VVT C8 C4 C 0 1 Y N N N N N -2.937 -0.163 21.259 -0.383 -1.407 0.110 C8 VVT 7
VVT C18 C5 C 0 1 Y N N N N N -3.144 -0.479 22.596 -0.355 -2.527 -0.727 C18 VVT 8
VVT C17 C6 C 0 1 Y N N N N N -3.236 -1.808 22.990 -1.366 -3.461 -0.628 C17 VVT 9
VVT N16 N3 N 0 1 Y N N N N N -3.087 -2.789 22.084 -2.348 -3.308 0.239 N16 VVT 10
VVT C15 C7 C 0 1 Y N N N N N -2.850 -2.512 20.796 -2.411 -2.267 1.047 C15 VVT 11
VVT C14 C8 C 0 1 Y N N N N N -2.750 -1.192 20.352 -1.439 -1.288 1.019 C14 VVT 12
VVT C C9 C 0 1 Y N N N N N -3.251 1.847 19.661 0.366 0.990 -0.075 C VVT 13
VVT C6 C10 C 0 1 Y N N N N N -4.144 1.282 18.666 -1.049 1.429 -0.124 C6 VVT 14
VVT C13 C11 C 0 1 Y N N N N N -5.352 0.680 19.032 -1.430 2.630 0.472 C13 VVT 15
VVT C12 C12 C 0 1 Y N N N N N -6.190 0.215 18.037 -2.749 3.033 0.423 C12 VVT 16
VVT C11 C13 C 0 1 Y N N N N N -5.852 0.381 16.687 -3.692 2.248 -0.216 C11 VVT 17
VVT C10 C14 C 0 1 Y N N N N N -4.675 1.029 16.349 -3.319 1.055 -0.810 C10 VVT 18
VVT C9 C15 C 0 1 Y N N N N N -3.823 1.484 17.335 -2.002 0.644 -0.772 C9 VVT 19
VVT H1 H1 H 0 1 N N N N N N -1.466 1.558 22.495 2.337 -1.764 0.157 H1 VVT 20
VVT H2 H2 H 0 1 N N N N N N -3.233 0.309 23.329 0.445 -2.658 -1.440 H2 VVT 21
VVT H3 H3 H 0 1 N N N N N N -3.427 -2.053 24.024 -1.353 -4.329 -1.271 H3 VVT 22
VVT H4 H4 H 0 1 N N N N N N -2.734 -3.321 20.090 -3.234 -2.181 1.742 H4 VVT 23
VVT H5 H5 H 0 1 N N N N N N -2.530 -0.977 19.317 -1.498 -0.438 1.683 H5 VVT 24
VVT H6 H6 H 0 1 N N N N N N -5.625 0.581 20.072 -0.695 3.243 0.972 H6 VVT 25
VVT H7 H7 H 0 1 N N N N N N -7.113 -0.280 18.301 -3.046 3.963 0.884 H7 VVT 26
VVT H8 H8 H 0 1 N N N N N N -6.506 0.006 15.914 -4.723 2.568 -0.252 H8 VVT 27
VVT H9 H9 H 0 1 N N N N N N -4.423 1.179 15.310 -4.060 0.447 -1.307 H9 VVT 28
VVT H10 H10 H 0 1 N N N N N N -2.910 1.995 17.069 -1.712 -0.287 -1.236 H10 VVT 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VVT C10 C11 DOUB Y N 1
VVT C10 C9 SING Y N 2
VVT C11 C12 SING Y N 3
VVT C9 C6 DOUB Y N 4
VVT C12 C13 DOUB Y N 5
VVT C6 C13 SING Y N 6
VVT C6 C SING N N 7
VVT N1 C DOUB Y N 8
VVT N1 N2 SING Y N 9
VVT C C5 SING Y N 10
VVT N2 C3 DOUB Y N 11
VVT C14 C15 DOUB Y N 12
VVT C14 C8 SING Y N 13
VVT C15 N16 SING Y N 14
VVT C5 C8 SING N N 15
VVT C5 C4 DOUB Y N 16
VVT C8 C18 DOUB Y N 17
VVT C3 C4 SING Y N 18
VVT C3 CL7 SING N N 19
VVT N16 C17 DOUB Y N 20
VVT C18 C17 SING Y N 21
VVT C4 H1 SING N N 22
VVT C18 H2 SING N N 23
VVT C17 H3 SING N N 24
VVT C15 H4 SING N N 25
VVT C14 H5 SING N N 26
VVT C13 H6 SING N N 27
VVT C12 H7 SING N N 28
VVT C11 H8 SING N N 29
VVT C10 H9 SING N N 30
VVT C9 H10 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VVT SMILES ACDLabs 12.01 Clc2cc(c1ccncc1)c(nn2)c3ccccc3
VVT InChI InChI 1.03 InChI=1S/C15H10ClN3/c16-14-10-13(11-6-8-17-9-7-11)15(19-18-14)12-4-2-1-3-5-12/h1-10H
VVT InChIKey InChI 1.03 FHQYQYMBRPYWIY-UHFFFAOYSA-N
VVT SMILES_CANONICAL CACTVS 3.385 Clc1cc(c2ccncc2)c(nn1)c3ccccc3
VVT SMILES CACTVS 3.385 Clc1cc(c2ccncc2)c(nn1)c3ccccc3
VVT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)c2c(cc(nn2)Cl)c3ccncc3
VVT SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)c2c(cc(nn2)Cl)c3ccncc3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VVT "SYSTEMATIC NAME" ACDLabs 12.01 6-chloro-3-phenyl-4-(pyridin-4-yl)pyridazine
VVT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 6-chloranyl-3-phenyl-4-pyridin-4-yl-pyridazine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VVT 'Create component' 2015-05-15 RCSB
VVT 'Initial release' 2016-07-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VVT CL7 Cl 3.000 -3.750 1
VVT C3 C 4.299 -3.000 2
VVT N2 N 5.598 -3.750 3
VVT N1 N 6.897 -3.000 4
VVT C4 C 4.299 -1.500 5
VVT C5 C 5.598 -0.750 6
VVT C8 C 5.598 0.750 7
VVT C18 C 6.897 1.500 8
VVT C17 C 6.897 3.000 9
VVT N16 N 5.598 3.750 10
VVT C15 C 4.299 3.000 11
VVT C14 C 4.299 1.500 12
VVT C C 6.897 -1.500 13
VVT C6 C 8.196 -0.750 14
VVT C13 C 8.196 0.750 15
VVT C12 C 9.495 1.500 16
VVT C11 C 10.794 0.750 17
VVT C10 C 10.794 -0.750 18
VVT C9 C 9.495 -1.500 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VVT C10 C11 DOUBLE NONE 1
VVT C10 C9 SINGLE NONE 2
VVT C11 C12 SINGLE NONE 3
VVT C9 C6 DOUBLE NONE 4
VVT C12 C13 DOUBLE NONE 5
VVT C6 C13 SINGLE NONE 6
VVT C6 C SINGLE NONE 7
VVT N1 C DOUBLE NONE 8
VVT N1 N2 SINGLE NONE 9
VVT C C5 SINGLE NONE 10
VVT N2 C3 DOUBLE NONE 11
VVT C14 C15 DOUBLE NONE 12
VVT C14 C8 SINGLE NONE 13
VVT C15 N16 SINGLE NONE 14
VVT C5 C8 SINGLE NONE 15
VVT C5 C4 DOUBLE NONE 16
VVT C8 C18 DOUBLE NONE 17
VVT C3 C4 SINGLE NONE 18
VVT C3 CL7 SINGLE NONE 19
VVT N16 C17 DOUBLE NONE 20
VVT C18 C17 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VVT MurckoScaffold S1 scaffold c1ccc(-c2nnccc2-c2ccncc2)cc1 InChI=1S/C15H11N3/c1-2-4-13(5-3-1)15-14(8-11-17-18-15)12-6-9-16-10-7-12/h1-11H GTBPVPAMUBGCEA-UHFFFAOYSA-N
VVT phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VVT pyridazine F2 fragment c1ccnnc1 InChI=1S/C4H4N2/c1-2-4-6-5-3-1/h1-4H PBMFSQRYOILNGV-UHFFFAOYSA-N
VVT pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VVT C3 S1 1
VVT N2 S1 1
VVT N1 S1 1
VVT C4 S1 1
VVT C5 S1 1
VVT C8 S1 1
VVT C18 S1 1
VVT C17 S1 1
VVT N16 S1 1
VVT C15 S1 1
VVT C14 S1 1
VVT C S1 1
VVT C6 S1 1
VVT C13 S1 1
VVT C12 S1 1
VVT C11 S1 1
VVT C10 S1 1
VVT C9 S1 1
VVT C6 F1 1
VVT C9 F1 1
VVT C10 F1 1
VVT C11 F1 1
VVT C12 F1 1
VVT C13 F1 1
VVT C4 F2 1
VVT C3 F2 1
VVT N2 F2 1
VVT N1 F2 1
VVT C F2 1
VVT C5 F2 1
VVT C17 F3 1
VVT C18 F3 1
VVT C8 F3 1
VVT C14 F3 1
VVT C15 F3 1
VVT N16 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VVT
_pdbe_chem_comp_rdkit_properties.exactmw 267.056
_pdbe_chem_comp_rdkit_properties.amw 267.719
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 129.526
_pdbe_chem_comp_rdkit_properties.tpsa 38.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.099
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.065
_pdbe_chem_comp_rdkit_properties.chi0v 9.976
_pdbe_chem_comp_rdkit_properties.chi1v 5.411
_pdbe_chem_comp_rdkit_properties.chi2v 2.333
_pdbe_chem_comp_rdkit_properties.chi3v 2.333
_pdbe_chem_comp_rdkit_properties.chi4v 1.540
_pdbe_chem_comp_rdkit_properties.chi0n 19.220
_pdbe_chem_comp_rdkit_properties.chi1n 10.033
_pdbe_chem_comp_rdkit_properties.chi2n 2.163
_pdbe_chem_comp_rdkit_properties.chi3n 2.163
_pdbe_chem_comp_rdkit_properties.chi4n 1.407
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.260
_pdbe_chem_comp_rdkit_properties.kappa1 5.021
_pdbe_chem_comp_rdkit_properties.kappa2 5.162
_pdbe_chem_comp_rdkit_properties.kappa3 2.462
_pdbe_chem_comp_rdkit_properties.Phi 1.364
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VVT UniChem ChEMBL CHEMBL4646517
VVT UniChem PDBe VVT
VVT UniChem ZINC ZINC000095909138
VVT UniChem eMolecules 31505901
VVT UniChem SureChEMBL SCHEMBL1597390
VVT UniChem ChemicalBook CB52525182
VVT UniChem PubChem 87264666
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VVT CL7 -1.590 4.806 2.353 ETKDGv3 1
VVT C3 -0.752 3.376 1.787 ETKDGv3 2
VVT N2 0.459 3.133 2.189 ETKDGv3 3
VVT N1 1.162 1.992 1.752 ETKDGv3 4
VVT C4 -1.421 2.432 0.880 ETKDGv3 5
VVT C5 -0.774 1.327 0.474 ETKDGv3 6
VVT C8 -1.491 0.309 -0.331 ETKDGv3 7
VVT C18 -2.145 0.652 -1.455 ETKDGv3 8
VVT C17 -2.839 -0.388 -2.240 ETKDGv3 9
VVT N16 -2.821 -1.628 -1.843 ETKDGv3 10
VVT C15 -2.140 -2.023 -0.640 ETKDGv3 11
VVT C14 -1.501 -1.110 0.101 ETKDGv3 12
VVT C 0.632 1.121 0.938 ETKDGv3 13
VVT C6 1.465 -0.006 0.464 ETKDGv3 14
VVT C13 1.515 -0.351 -0.981 ETKDGv3 15
VVT C12 2.269 -1.373 -1.406 ETKDGv3 16
VVT C11 3.066 -2.156 -0.441 ETKDGv3 17
VVT C10 3.044 -1.839 0.858 ETKDGv3 18
VVT C9 2.214 -0.711 1.332 ETKDGv3 19
VVT H1 -2.450 2.613 0.592 ETKDGv3 20
VVT H2 -2.156 1.677 -1.805 ETKDGv3 21
VVT H3 -3.360 -0.122 -3.149 ETKDGv3 22
VVT H4 -2.151 -3.060 -0.333 ETKDGv3 23
VVT H5 -1.000 -1.411 1.012 ETKDGv3 24
VVT H6 0.953 0.230 -1.701 ETKDGv3 25
VVT H7 2.303 -1.621 -2.459 ETKDGv3 26
VVT H8 3.673 -2.982 -0.789 ETKDGv3 27
VVT H9 3.632 -2.409 1.566 ETKDGv3 28
VVT H10 2.205 -0.477 2.390 ETKDGv3 29
#