data_VW8
#
_chem_comp.id VW8
_chem_comp.name (1E)-N-hydroxy(phenoxy)ethanimidamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H10 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-02
_chem_comp.pdbx_modified_date 2022-10-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 166.177
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VW8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FNI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VW8 N1 N1 N 0 1 N N N N N N 23.329 6.024 -34.114 2.498 1.364 -0.004 N1 VW8 1
VW8 C7 C1 C 0 1 N N N N N N 23.167 7.332 -33.956 2.313 0.084 0.000 C7 VW8 2
VW8 O1 O1 O 0 1 N N N N N N 24.101 7.340 -31.855 4.704 -0.238 -0.000 O1 VW8 3
VW8 C1 C2 C 0 1 Y N N N N N 17.845 8.113 -36.404 -3.064 -1.407 -0.002 C1 VW8 4
VW8 C5 C3 C 0 1 Y N N N N N 19.512 9.337 -37.648 -3.654 0.916 0.002 C5 VW8 5
VW8 C6 C4 C 0 1 N N N N N N 22.285 8.131 -34.938 0.913 -0.475 0.003 C6 VW8 6
VW8 C4 C5 C 0 1 Y N N N N N 20.518 8.798 -36.855 -2.315 1.258 -0.000 C4 VW8 7
VW8 C3 C6 C 0 1 Y N N N N N 20.150 7.923 -35.848 -1.346 0.265 0.002 C3 VW8 8
VW8 C2 C7 C 0 1 Y N N N N N 18.833 7.565 -35.600 -1.724 -1.069 -0.004 C2 VW8 9
VW8 N N2 N 0 1 N N N N N N 23.755 8.033 -32.944 3.389 -0.763 0.002 N VW8 10
VW8 O O2 O 0 1 N N N N N N 21.119 7.358 -35.043 -0.029 0.600 0.000 O VW8 11
VW8 C C8 C 0 1 Y N N N N N 18.185 8.996 -37.424 -4.028 -0.415 0.001 C VW8 12
VW8 H1 H1 H 0 1 N N N N N N 23.923 5.633 -33.411 3.398 1.724 -0.006 H1 VW8 13
VW8 H2 H2 H 0 1 N N N N N N 24.498 7.924 -31.220 5.397 -0.912 0.002 H2 VW8 14
VW8 H3 H3 H 0 1 N N N N N N 16.810 7.854 -36.238 -3.359 -2.446 -0.007 H3 VW8 15
VW8 H4 H4 H 0 1 N N N N N N 19.764 10.024 -38.442 -4.408 1.688 0.004 H4 VW8 16
VW8 H5 H5 H 0 1 N N N N N N 22.779 8.231 -35.916 0.766 -1.090 -0.885 H5 VW8 17
VW8 H6 H6 H 0 1 N N N N N N 22.058 9.130 -34.538 0.767 -1.083 0.896 H6 VW8 18
VW8 H7 H7 H 0 1 N N N N N N 21.554 9.054 -37.019 -2.023 2.298 0.000 H7 VW8 19
VW8 H8 H8 H 0 1 N N N N N N 18.584 6.879 -34.804 -0.972 -1.844 -0.011 H8 VW8 20
VW8 H9 H9 H 0 1 N N N N N N 23.919 9.017 -33.014 3.250 -1.723 0.006 H9 VW8 21
VW8 H10 H10 H 0 1 N N N N N N 17.411 9.419 -38.046 -5.074 -0.681 0.003 H10 VW8 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VW8 C5 C DOUB Y N 1
VW8 C5 C4 SING Y N 2
VW8 C C1 SING Y N 3
VW8 C4 C3 DOUB Y N 4
VW8 C1 C2 DOUB Y N 5
VW8 C3 C2 SING Y N 6
VW8 C3 O SING N N 7
VW8 O C6 SING N N 8
VW8 C6 C7 SING N N 9
VW8 N1 C7 DOUB N N 10
VW8 C7 N SING N N 11
VW8 N O1 SING N N 12
VW8 N1 H1 SING N N 13
VW8 O1 H2 SING N N 14
VW8 C1 H3 SING N N 15
VW8 C5 H4 SING N N 16
VW8 C6 H5 SING N N 17
VW8 C6 H6 SING N N 18
VW8 C4 H7 SING N N 19
VW8 C2 H8 SING N N 20
VW8 N H9 SING N N 21
VW8 C H10 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VW8 SMILES ACDLabs 12.01 N=C(COc1ccccc1)NO
VW8 InChI InChI 1.06 InChI=1S/C8H10N2O2/c9-8(10-11)6-12-7-4-2-1-3-5-7/h1-5,11H,6H2,(H2,9,10)
VW8 InChIKey InChI 1.06 BIIYCNCZOGOUJP-UHFFFAOYSA-N
VW8 SMILES_CANONICAL CACTVS 3.385 ONC(=N)COc1ccccc1
VW8 SMILES CACTVS 3.385 ONC(=N)COc1ccccc1
VW8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\COc1ccccc1)/NO"
VW8 SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)OCC(=N)NO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VW8 "SYSTEMATIC NAME" ACDLabs 12.01 (1E)-N-hydroxy(phenoxy)ethanimidamide
VW8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-oxidanyl-2-phenoxy-ethanimidamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VW8 'Create component' 2022-09-02 RCSB
VW8 'Initial release' 2022-11-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VW8 N1 N 6.897 2.768 1
VW8 C7 C 5.598 2.018 2
VW8 O1 O 4.299 4.268 3
VW8 C1 C 5.598 -3.982 4
VW8 C5 C 3.000 -3.982 5
VW8 C6 C 5.598 0.517 6
VW8 C4 C 3.000 -2.482 7
VW8 C3 C 4.299 -1.732 8
VW8 C2 C 5.598 -2.482 9
VW8 N N 4.299 2.768 10
VW8 O O 4.299 -0.233 11
VW8 C C 4.299 -4.732 12
VW8 H1 H 6.897 4.267 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VW8 C5 C SINGLE NONE 1
VW8 C5 C4 DOUBLE NONE 2
VW8 C C1 DOUBLE NONE 3
VW8 C4 C3 SINGLE NONE 4
VW8 C1 C2 SINGLE NONE 5
VW8 C3 C2 DOUBLE NONE 6
VW8 C3 O SINGLE NONE 7
VW8 O C6 SINGLE NONE 8
VW8 C6 C7 SINGLE ENDDOWNRIGHT 9
VW8 N1 C7 DOUBLE NONE 10
VW8 C7 N SINGLE ENDDOWNRIGHT 11
VW8 N O1 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VW8 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VW8 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VW8 C1 S1 1
VW8 C5 S1 1
VW8 C4 S1 1
VW8 C3 S1 1
VW8 C2 S1 1
VW8 C S1 1
VW8 C1 F1 1
VW8 C F1 1
VW8 C5 F1 1
VW8 C4 F1 1
VW8 C3 F1 1
VW8 C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VW8
_pdbe_chem_comp_rdkit_properties.exactmw 166.074
_pdbe_chem_comp_rdkit_properties.amw 166.180
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 84.511
_pdbe_chem_comp_rdkit_properties.tpsa 65.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.559
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.976
_pdbe_chem_comp_rdkit_properties.chi0v 5.711
_pdbe_chem_comp_rdkit_properties.chi1v 2.788
_pdbe_chem_comp_rdkit_properties.chi2v 0.808
_pdbe_chem_comp_rdkit_properties.chi3v 0.808
_pdbe_chem_comp_rdkit_properties.chi4v 0.405
_pdbe_chem_comp_rdkit_properties.chi0n 15.711
_pdbe_chem_comp_rdkit_properties.chi1n 7.591
_pdbe_chem_comp_rdkit_properties.chi2n 0.808
_pdbe_chem_comp_rdkit_properties.chi3n 0.808
_pdbe_chem_comp_rdkit_properties.chi4n 0.405
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.550
_pdbe_chem_comp_rdkit_properties.kappa1 2.231
_pdbe_chem_comp_rdkit_properties.kappa2 4.353
_pdbe_chem_comp_rdkit_properties.kappa3 2.593
_pdbe_chem_comp_rdkit_properties.Phi 0.810
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VW8 UniChem PDBe VW8
VW8 UniChem ZINC ZINC000004218352
VW8 UniChem eMolecules 3503745
VW8 UniChem SureChEMBL SCHEMBL1581040
VW8 UniChem 'EPA CompTox Dashboard' DTXSID70372524
VW8 UniChem PubChem 2744271
VW8 UniChem PubChem 5703983
VW8 UniChem PubChem 9580876
VW8 UniChem Mcule MCULE-7017178957
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VW8 N1 2.877 -1.119 1.843 ETKDGv3 1
VW8 C7 2.515 -0.192 1.012 ETKDGv3 2
VW8 O1 4.724 -0.086 -0.002 ETKDGv3 3
VW8 C1 -2.996 -0.664 -1.580 ETKDGv3 4
VW8 C5 -3.094 0.995 0.204 ETKDGv3 5
VW8 C6 1.098 0.287 1.020 ETKDGv3 6
VW8 C4 -1.800 0.815 0.498 ETKDGv3 7
VW8 C3 -0.987 -0.168 -0.271 ETKDGv3 8
VW8 C2 -1.568 -0.866 -1.259 ETKDGv3 9
VW8 N 3.435 0.330 0.044 ETKDGv3 10
VW8 O 0.369 -0.390 0.001 ETKDGv3 11
VW8 C -3.721 0.221 -0.886 ETKDGv3 12
VW8 H1 3.847 -1.506 1.863 ETKDGv3 13
VW8 H2 4.724 -0.842 -0.642 ETKDGv3 14
VW8 H3 -3.453 -1.233 -2.380 ETKDGv3 15
VW8 H4 -3.684 1.710 0.763 ETKDGv3 16
VW8 H5 1.080 1.382 0.831 ETKDGv3 17
VW8 H6 0.634 0.087 2.011 ETKDGv3 18
VW8 H7 -1.359 1.392 1.300 ETKDGv3 19
VW8 H8 -0.992 -1.585 -1.828 ETKDGv3 20
VW8 H9 3.117 1.061 -0.631 ETKDGv3 21
VW8 H10 -4.767 0.370 -1.120 ETKDGv3 22
#