data_VWA
#
_chem_comp.id VWA
_chem_comp.name (1S)-1-(4-fluorophenyl)-N-methylethan-1-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H12 F N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-17
_chem_comp.pdbx_modified_date 2020-09-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 153.197
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VWA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RLP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VWA N1 N1 N 0 1 N N N N N N -21.961 11.987 -7.697 2.471 0.766 -0.380 N1 VWA 1
VWA C4 C1 C 0 1 Y N N N N N -24.289 12.353 -8.579 0.303 -0.261 0.010 C4 VWA 2
VWA C5 C2 C 0 1 Y N N N N N -25.508 12.947 -8.312 -0.522 -1.273 -0.444 C5 VWA 3
VWA C6 C3 C 0 1 Y N N N N N -26.686 12.398 -8.782 -1.890 -1.085 -0.482 C6 VWA 4
VWA C7 C4 C 0 1 Y N N N N N -26.612 11.249 -9.502 -2.436 0.117 -0.064 C7 VWA 5
VWA C8 C5 C 0 1 Y N N N N N -25.444 10.591 -9.738 -1.609 1.130 0.391 C8 VWA 6
VWA C1 C6 C 0 1 N N N N N N -21.074 11.608 -8.795 3.806 0.473 -0.919 C1 VWA 7
VWA C2 C7 C 0 1 N N S N N N -23.010 12.975 -8.051 1.795 -0.466 0.050 C2 VWA 8
VWA C3 C8 C 0 1 N N N N N N -22.445 14.016 -9.008 2.224 -0.812 1.477 C3 VWA 9
VWA F1 F1 F 0 1 N N N N N N -27.766 10.707 -9.981 -3.773 0.302 -0.101 F1 VWA 10
VWA C9 C9 C 0 1 Y N N N N N -24.271 11.184 -9.317 -0.240 0.942 0.422 C9 VWA 11
VWA H4 H1 H 0 1 N N N N N N -22.414 11.160 -7.364 2.524 1.431 0.377 H4 VWA 12
VWA H9 H3 H 0 1 N N N N N N -25.541 13.854 -7.727 -0.096 -2.210 -0.770 H9 VWA 13
VWA H10 H4 H 0 1 N N N N N N -27.637 12.869 -8.583 -2.534 -1.876 -0.837 H10 VWA 14
VWA H11 H5 H 0 1 N N N N N N -25.435 9.634 -10.239 -2.033 2.068 0.716 H11 VWA 15
VWA H1 H6 H 0 1 N N N N N N -20.336 10.876 -8.435 4.411 -0.008 -0.150 H1 VWA 16
VWA H3 H7 H 0 1 N N N N N N -21.666 11.161 -9.607 3.713 -0.192 -1.777 H3 VWA 17
VWA H2 H8 H 0 1 N N N N N N -20.552 12.501 -9.170 4.284 1.402 -1.229 H2 VWA 18
VWA H5 H9 H 0 1 N N N N N N -23.276 13.509 -7.127 2.068 -1.282 -0.619 H5 VWA 19
VWA H6 H10 H 0 1 N N N N N N -21.521 14.439 -8.586 1.723 -1.726 1.796 H6 VWA 20
VWA H7 H11 H 0 1 N N N N N N -22.223 13.542 -9.976 3.304 -0.961 1.506 H7 VWA 21
VWA H8 H12 H 0 1 N N N N N N -23.183 14.819 -9.154 1.952 0.004 2.147 H8 VWA 22
VWA H12 H13 H 0 1 N N N N N N -23.325 10.728 -9.568 0.405 1.732 0.777 H12 VWA 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VWA F1 C7 SING N N 1
VWA C8 C7 DOUB Y N 2
VWA C8 C9 SING Y N 3
VWA C7 C6 SING Y N 4
VWA C9 C4 DOUB Y N 5
VWA C3 C2 SING N N 6
VWA C1 N1 SING N N 7
VWA C6 C5 DOUB Y N 8
VWA C4 C5 SING Y N 9
VWA C4 C2 SING N N 10
VWA C2 N1 SING N N 11
VWA N1 H4 SING N N 12
VWA C5 H9 SING N N 13
VWA C6 H10 SING N N 14
VWA C8 H11 SING N N 15
VWA C1 H1 SING N N 16
VWA C1 H3 SING N N 17
VWA C1 H2 SING N N 18
VWA C2 H5 SING N N 19
VWA C3 H6 SING N N 20
VWA C3 H7 SING N N 21
VWA C3 H8 SING N N 22
VWA C9 H12 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VWA SMILES ACDLabs 12.01 N(C)C(c1ccc(cc1)F)C
VWA InChI InChI 1.03 InChI=1S/C9H12FN/c1-7(11-2)8-3-5-9(10)6-4-8/h3-7,11H,1-2H3/t7-/m0/s1
VWA InChIKey InChI 1.03 YORRIBKELCOOIJ-ZETCQYMHSA-N
VWA SMILES_CANONICAL CACTVS 3.385 CN[C@@H](C)c1ccc(F)cc1
VWA SMILES CACTVS 3.385 CN[CH](C)c1ccc(F)cc1
VWA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H](c1ccc(cc1)F)NC
VWA SMILES "OpenEye OEToolkits" 2.0.7 CC(c1ccc(cc1)F)NC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VWA "SYSTEMATIC NAME" ACDLabs 12.01 (1S)-1-(4-fluorophenyl)-N-methylethan-1-amine
VWA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (1~{S})-1-(4-fluorophenyl)-~{N}-methyl-ethanamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VWA 'Create component' 2020-09-17 RCSB
VWA 'Initial release' 2020-09-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VWA N1 N 5.598 2.625 1
VWA C4 C 4.299 0.375 2
VWA C5 C 3.000 -0.375 3
VWA C6 C 3.000 -1.875 4
VWA C7 C 4.299 -2.625 5
VWA C8 C 5.598 -1.875 6
VWA C1 C 5.598 4.125 7
VWA C2 C 4.299 1.875 8
VWA C3 C 3.000 2.625 9
VWA F1 F 4.299 -4.125 10
VWA C9 C 5.598 -0.375 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VWA F1 C7 SINGLE NONE 1
VWA C8 C7 DOUBLE NONE 2
VWA C8 C9 SINGLE NONE 3
VWA C7 C6 SINGLE NONE 4
VWA C9 C4 DOUBLE NONE 5
VWA C2 C3 SINGLE BEGINDASH 6
VWA C1 N1 SINGLE NONE 7
VWA C6 C5 DOUBLE NONE 8
VWA C4 C5 SINGLE NONE 9
VWA C4 C2 SINGLE NONE 10
VWA C2 N1 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VWA MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VWA phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VWA C4 S1 1
VWA C5 S1 1
VWA C6 S1 1
VWA C7 S1 1
VWA C8 S1 1
VWA C9 S1 1
VWA C4 F1 1
VWA C9 F1 1
VWA C8 F1 1
VWA C7 F1 1
VWA C6 F1 1
VWA C5 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VWA
_pdbe_chem_comp_rdkit_properties.exactmw 153.095
_pdbe_chem_comp_rdkit_properties.amw 153.200
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 83.159
_pdbe_chem_comp_rdkit_properties.tpsa 12.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.051
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.609
_pdbe_chem_comp_rdkit_properties.chi0v 5.325
_pdbe_chem_comp_rdkit_properties.chi1v 2.636
_pdbe_chem_comp_rdkit_properties.chi2v 0.943
_pdbe_chem_comp_rdkit_properties.chi3v 0.943
_pdbe_chem_comp_rdkit_properties.chi4v 0.472
_pdbe_chem_comp_rdkit_properties.chi0n 17.325
_pdbe_chem_comp_rdkit_properties.chi1n 8.583
_pdbe_chem_comp_rdkit_properties.chi2n 0.943
_pdbe_chem_comp_rdkit_properties.chi3n 0.943
_pdbe_chem_comp_rdkit_properties.chi4n 0.472
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.890
_pdbe_chem_comp_rdkit_properties.kappa1 1.716
_pdbe_chem_comp_rdkit_properties.kappa2 3.486
_pdbe_chem_comp_rdkit_properties.kappa3 2.017
_pdbe_chem_comp_rdkit_properties.Phi 0.544
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VWA UniChem PDBe VWA
VWA UniChem ZINC ZINC000006950492
VWA UniChem eMolecules 31431076
VWA UniChem ChemicalBook CB7464359
VWA UniChem SureChEMBL SCHEMBL13262062
VWA UniChem 'PubChem TPHARMA' 16791120
VWA UniChem PubChem 8120202
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VWA N1 1.979 0.571 0.416 ETKDGv3 1
VWA C4 -0.314 -0.221 -0.026 ETKDGv3 2
VWA C5 -1.132 -0.591 -1.209 ETKDGv3 3
VWA C6 -2.435 -0.288 -1.252 ETKDGv3 4
VWA C7 -3.070 0.415 -0.120 ETKDGv3 5
VWA C8 -2.343 0.747 0.954 ETKDGv3 6
VWA C1 2.037 1.578 -0.648 ETKDGv3 7
VWA C2 1.157 -0.587 0.015 ETKDGv3 8
VWA C3 1.369 -1.751 0.992 ETKDGv3 9
VWA F1 -4.390 0.721 -0.169 ETKDGv3 10
VWA C9 -0.905 0.412 1.008 ETKDGv3 11
VWA H4 2.962 0.245 0.571 ETKDGv3 12
VWA H9 -0.677 -1.109 -2.044 ETKDGv3 13
VWA H10 -3.026 -0.559 -2.118 ETKDGv3 14
VWA H11 -2.806 1.260 1.787 ETKDGv3 15
VWA H1 2.459 1.147 -1.582 ETKDGv3 16
VWA H3 1.026 1.992 -0.851 ETKDGv3 17
VWA H2 2.687 2.418 -0.324 ETKDGv3 18
VWA H5 1.482 -0.945 -0.989 ETKDGv3 19
VWA H6 2.427 -2.088 0.960 ETKDGv3 20
VWA H7 1.125 -1.442 2.031 ETKDGv3 21
VWA H8 0.724 -2.611 0.709 ETKDGv3 22
VWA H12 -0.337 0.684 1.888 ETKDGv3 23
#