data_W0M
#
_chem_comp.id W0M
_chem_comp.name (2R)-2-(4-chlorophenoxy)propanamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H10 Cl N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-24
_chem_comp.pdbx_modified_date 2020-11-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 199.634
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W0M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RQL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W0M C4 C1 C 0 1 Y N N N N N 21.606 47.330 10.324 2.261 -1.265 0.206 C4 W0M 1
W0M C5 C2 C 0 1 Y N N N N N 20.831 47.544 9.204 2.723 0.009 -0.073 C5 W0M 2
W0M C6 C3 C 0 1 Y N N N N N 20.408 48.809 8.854 1.829 1.055 -0.217 C6 W0M 3
W0M C7 C4 C 0 1 Y N N N N N 20.701 49.874 9.686 0.473 0.829 -0.083 C7 W0M 4
W0M C8 C5 C 0 1 N N N N N N 22.260 50.066 13.901 -3.554 -0.101 -0.352 C8 W0M 5
W0M O1 O1 O 0 1 N N N N N N 22.004 49.367 14.884 -3.780 -1.292 -0.309 O1 W0M 6
W0M N N1 N 0 1 N N N N N N 23.490 50.367 13.522 -4.514 0.752 -0.759 N W0M 7
W0M C1 C6 C 0 1 N N R N N N 21.117 50.603 13.050 -2.200 0.424 0.050 C1 W0M 8
W0M C C7 C 0 1 N N N N N N 20.734 51.997 13.491 -2.340 1.293 1.301 C W0M 9
W0M O O2 O 0 1 N N N N N N 21.595 50.723 11.711 -1.327 -0.673 0.327 O W0M 10
W0M C2 C8 C 0 1 Y N N N N N 21.418 49.659 10.853 0.007 -0.448 0.196 C2 W0M 11
W0M CL CL1 CL 0 0 N N N N N N 20.241 46.176 8.309 4.427 0.296 -0.241 CL W0M 12
W0M C3 C9 C 0 1 Y N N N N N 21.894 48.394 11.159 0.906 -1.495 0.340 C3 W0M 13
W0M H1 H1 H 0 1 N N N N N N 21.984 46.343 10.547 2.961 -2.081 0.313 H1 W0M 14
W0M H2 H2 H 0 1 N N N N N N 19.854 48.966 7.940 2.191 2.049 -0.435 H2 W0M 15
W0M H3 H3 H 0 1 N N N N N N 20.372 50.870 9.428 -0.225 1.645 -0.196 H3 W0M 16
W0M H4 H4 H 0 1 N N N N N N 24.272 50.023 14.042 -5.386 0.414 -1.017 H4 W0M 17
W0M H5 H5 H 0 1 N N N N N N 23.639 50.939 12.715 -4.334 1.705 -0.794 H5 W0M 18
W0M H6 H6 H 0 1 N N N N N N 20.249 49.930 13.112 -1.786 1.021 -0.763 H6 W0M 19
W0M H7 H7 H 0 1 N N N N N N 20.356 51.965 14.523 -1.361 1.673 1.591 H7 W0M 20
W0M H8 H8 H 0 1 N N N N N N 21.617 52.652 13.444 -3.006 2.130 1.089 H8 W0M 21
W0M H9 H9 H 0 1 N N N N N N 19.951 52.390 12.826 -2.754 0.696 2.114 H9 W0M 22
W0M H10 H10 H 0 1 N N N N N N 22.488 48.240 12.047 0.545 -2.491 0.553 H10 W0M 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W0M CL C5 SING N N 1
W0M C6 C5 DOUB Y N 2
W0M C6 C7 SING Y N 3
W0M C5 C4 SING Y N 4
W0M C7 C2 DOUB Y N 5
W0M C4 C3 DOUB Y N 6
W0M C2 C3 SING Y N 7
W0M C2 O SING N N 8
W0M O C1 SING N N 9
W0M C1 C SING N N 10
W0M C1 C8 SING N N 11
W0M N C8 SING N N 12
W0M C8 O1 DOUB N N 13
W0M C4 H1 SING N N 14
W0M C6 H2 SING N N 15
W0M C7 H3 SING N N 16
W0M N H4 SING N N 17
W0M N H5 SING N N 18
W0M C1 H6 SING N N 19
W0M C H7 SING N N 20
W0M C H8 SING N N 21
W0M C H9 SING N N 22
W0M C3 H10 SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W0M SMILES ACDLabs 12.01 c1cc(ccc1Cl)OC(C(=O)N)C
W0M InChI InChI 1.03 InChI=1S/C9H10ClNO2/c1-6(9(11)12)13-8-4-2-7(10)3-5-8/h2-6H,1H3,(H2,11,12)/t6-/m1/s1
W0M InChIKey InChI 1.03 GLBNTBLOLXXOFK-ZCFIWIBFSA-N
W0M SMILES_CANONICAL CACTVS 3.385 C[C@@H](Oc1ccc(Cl)cc1)C(N)=O
W0M SMILES CACTVS 3.385 C[CH](Oc1ccc(Cl)cc1)C(N)=O
W0M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@H](C(=O)N)Oc1ccc(cc1)Cl
W0M SMILES "OpenEye OEToolkits" 2.0.7 CC(C(=O)N)Oc1ccc(cc1)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W0M "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-2-(4-chlorophenoxy)propanamide
W0M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{R})-2-(4-chloranylphenoxy)propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W0M 'Create component' 2020-09-24 RCSB
W0M 'Initial release' 2020-11-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
W0M C4 C 3.000 -2.715 1
W0M C5 C 4.299 -3.465 2
W0M C6 C 5.598 -2.715 3
W0M C7 C 5.598 -1.215 4
W0M C8 C 5.598 3.285 5
W0M O1 O 6.897 4.035 6
W0M N N 4.299 4.035 7
W0M C1 C 5.598 1.785 8
W0M C C 6.897 1.035 9
W0M O O 4.299 1.035 10
W0M C2 C 4.299 -0.465 11
W0M CL Cl 4.299 -4.965 12
W0M C3 C 3.000 -1.215 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
W0M CL C5 SINGLE NONE 1
W0M C6 C5 SINGLE NONE 2
W0M C6 C7 DOUBLE NONE 3
W0M C5 C4 DOUBLE NONE 4
W0M C7 C2 SINGLE NONE 5
W0M C4 C3 SINGLE NONE 6
W0M C2 C3 DOUBLE NONE 7
W0M C2 O SINGLE NONE 8
W0M O C1 SINGLE NONE 9
W0M C1 C SINGLE BEGINWEDGE 10
W0M C1 C8 SINGLE NONE 11
W0M N C8 SINGLE NONE 12
W0M C8 O1 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
W0M MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
W0M amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
W0M phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
W0M Z19727416 F3 fragment CC(Oc1ccc(Cl)cc1)C(N)=O InChI=1S/C9H10ClNO2/c1-6(9(11)12)13-8-4-2-7(10)3-5-8/h2-6H,1H3,(H2,11,12) GLBNTBLOLXXOFK-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
W0M C4 S1 1
W0M C5 S1 1
W0M C6 S1 1
W0M C7 S1 1
W0M C2 S1 1
W0M C3 S1 1
W0M N F1 1
W0M C8 F1 1
W0M O1 F1 1
W0M C1 F1 1
W0M C4 F2 1
W0M C5 F2 1
W0M C6 F2 1
W0M C7 F2 1
W0M C2 F2 1
W0M C3 F2 1
W0M C F3 1
W0M C1 F3 1
W0M O F3 1
W0M C2 F3 1
W0M C7 F3 1
W0M C6 F3 1
W0M C5 F3 1
W0M CL F3 1
W0M C4 F3 1
W0M C3 F3 1
W0M C8 F3 1
W0M O1 F3 1
W0M N F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id W0M
_pdbe_chem_comp_rdkit_properties.exactmw 199.040
_pdbe_chem_comp_rdkit_properties.amw 199.637
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 95.610
_pdbe_chem_comp_rdkit_properties.tpsa 52.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.130
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.126
_pdbe_chem_comp_rdkit_properties.chi0v 6.898
_pdbe_chem_comp_rdkit_properties.chi1v 3.403
_pdbe_chem_comp_rdkit_properties.chi2v 1.159
_pdbe_chem_comp_rdkit_properties.chi3v 1.159
_pdbe_chem_comp_rdkit_properties.chi4v 0.577
_pdbe_chem_comp_rdkit_properties.chi0n 16.142
_pdbe_chem_comp_rdkit_properties.chi1n 7.919
_pdbe_chem_comp_rdkit_properties.chi2n 0.970
_pdbe_chem_comp_rdkit_properties.chi3n 0.970
_pdbe_chem_comp_rdkit_properties.chi4n 0.483
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.220
_pdbe_chem_comp_rdkit_properties.kappa1 2.886
_pdbe_chem_comp_rdkit_properties.kappa2 4.141
_pdbe_chem_comp_rdkit_properties.kappa3 2.951
_pdbe_chem_comp_rdkit_properties.Phi 0.919
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
W0M UniChem PDBe W0M
W0M UniChem ZINC ZINC000012937614
W0M UniChem Nikkaji J53.563J
W0M UniChem PubChem 15477891
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
W0M C4 2.430 0.222 1.563 ETKDGv3 1
W0M C5 3.282 0.925 0.806 ETKDGv3 2
W0M C6 2.937 1.233 -0.597 ETKDGv3 3
W0M C7 1.775 0.810 -1.110 ETKDGv3 4
W0M C8 -2.127 -0.193 0.778 ETKDGv3 5
W0M O1 -2.449 -0.649 1.907 ETKDGv3 6
W0M N -2.454 1.157 0.443 ETKDGv3 7
W0M C1 -1.436 -1.086 -0.217 ETKDGv3 8
W0M C -2.437 -1.570 -1.262 ETKDGv3 9
W0M O -0.379 -0.382 -0.876 ETKDGv3 10
W0M C2 0.825 0.034 -0.282 ETKDGv3 11
W0M CL 4.805 1.483 1.473 ETKDGv3 12
W0M C3 1.147 -0.246 0.999 ETKDGv3 13
W0M H1 2.675 -0.008 2.592 ETKDGv3 14
W0M H2 3.624 1.800 -1.211 ETKDGv3 15
W0M H3 1.526 1.038 -2.139 ETKDGv3 16
W0M H4 -2.939 1.768 1.136 ETKDGv3 17
W0M H5 -2.215 1.548 -0.495 ETKDGv3 18
W0M H6 -1.022 -1.983 0.295 ETKDGv3 19
W0M H7 -2.865 -0.710 -1.821 ETKDGv3 20
W0M H8 -1.929 -2.244 -1.983 ETKDGv3 21
W0M H9 -3.261 -2.133 -0.774 ETKDGv3 22
W0M H10 0.486 -0.813 1.638 ETKDGv3 23
#