data_W1N
#
_chem_comp.id W1N
_chem_comp.name "(3S)-3-amino-4-(2-fluorophenyl)butanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 F N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-02
_chem_comp.pdbx_modified_date 2022-10-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 197.206
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W1N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FJU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W1N C7 C1 C 0 1 N N S N N N 27.645 16.526 41.675 -1.002 0.177 0.179 C7 W1N 1
W1N C8 C2 C 0 1 N N N N N N 28.881 15.791 41.979 -2.365 0.027 0.857 C8 W1N 2
W1N C9 C3 C 0 1 N N N N N N 28.354 14.443 42.669 -3.440 -0.081 -0.194 C9 W1N 3
W1N O1 O1 O 0 1 N N N N N N 27.465 14.611 43.479 -4.724 -0.221 0.170 O1 W1N 4
W1N C1 C4 C 0 1 Y N N N N N 28.631 14.842 37.101 3.920 0.230 -0.673 C1 W1N 5
W1N C5 C5 C 0 1 Y N N N N N 27.119 15.948 38.595 2.150 1.372 0.468 C5 W1N 6
W1N C6 C6 C 0 1 N N N N N N 27.875 17.380 40.444 0.100 0.162 1.240 C6 W1N 7
W1N C4 C7 C 0 1 Y N N N N N 28.168 16.477 39.294 1.447 0.186 0.566 C4 W1N 8
W1N C3 C8 C 0 1 Y N N N N N 29.478 16.160 38.873 1.981 -0.980 0.044 C3 W1N 9
W1N C2 C9 C 0 1 Y N N N N N 29.716 15.347 37.783 3.219 -0.957 -0.576 C2 W1N 10
W1N F F1 F 0 1 N N N N N N 30.533 16.654 39.484 1.295 -2.140 0.139 F W1N 11
W1N C C10 C 0 1 Y N N N N N 27.348 15.139 37.509 3.386 1.394 -0.152 C W1N 12
W1N N N1 N 0 1 N N N N N N 27.393 17.512 42.882 -0.957 1.449 -0.555 N W1N 13
W1N O O2 O 0 1 N N N N N N 28.930 13.460 42.261 -3.146 -0.042 -1.366 O W1N 14
W1N H1 H1 H 0 1 N N N N N N 26.785 15.853 41.541 -0.849 -0.649 -0.516 H1 W1N 15
W1N H2 H2 H 0 1 N N N N N N 29.443 15.569 41.060 -2.368 -0.872 1.473 H2 W1N 16
W1N H3 H3 H 0 1 N N N N N N 29.519 16.363 42.669 -2.557 0.898 1.484 H3 W1N 17
W1N H4 H4 H 0 1 N N N N N N 27.201 13.772 43.838 -5.378 -0.286 -0.539 H4 W1N 18
W1N H5 H5 H 0 1 N N N N N N 28.787 14.209 36.240 4.888 0.248 -1.153 H5 W1N 19
W1N H6 H6 H 0 1 N N N N N N 26.106 16.167 38.898 1.734 2.281 0.874 H6 W1N 20
W1N H7 H7 H 0 1 N N N N N N 28.727 18.054 40.613 -0.001 1.038 1.881 H7 W1N 21
W1N H8 H8 H 0 1 N N N N N N 26.974 17.974 40.230 0.011 -0.742 1.843 H8 W1N 22
W1N H9 H9 H 0 1 N N N N N N 30.724 15.114 37.474 3.636 -1.865 -0.984 H9 W1N 23
W1N H10 H10 H 0 1 N N N N N N 26.509 14.729 36.966 3.935 2.321 -0.228 H10 W1N 24
W1N H11 H11 H 0 1 N N N N N N 27.236 16.984 43.717 -1.097 2.231 0.067 H11 W1N 25
W1N H12 H12 H 0 1 N N N N N N 28.193 18.100 43.005 -0.091 1.542 -1.065 H12 W1N 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W1N C1 C DOUB Y N 1
W1N C1 C2 SING Y N 2
W1N C C5 SING Y N 3
W1N C2 C3 DOUB Y N 4
W1N C5 C4 DOUB Y N 5
W1N C3 C4 SING Y N 6
W1N C3 F SING N N 7
W1N C4 C6 SING N N 8
W1N C6 C7 SING N N 9
W1N C7 C8 SING N N 10
W1N C7 N SING N N 11
W1N C8 C9 SING N N 12
W1N O C9 DOUB N N 13
W1N C9 O1 SING N N 14
W1N C7 H1 SING N N 15
W1N C8 H2 SING N N 16
W1N C8 H3 SING N N 17
W1N O1 H4 SING N N 18
W1N C1 H5 SING N N 19
W1N C5 H6 SING N N 20
W1N C6 H7 SING N N 21
W1N C6 H8 SING N N 22
W1N C2 H9 SING N N 23
W1N C H10 SING N N 24
W1N N H11 SING N N 25
W1N N H12 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W1N SMILES ACDLabs 12.01 Fc1ccccc1CC(N)CC(=O)O
W1N InChI InChI 1.06 InChI=1S/C10H12FNO2/c11-9-4-2-1-3-7(9)5-8(12)6-10(13)14/h1-4,8H,5-6,12H2,(H,13,14)/t8-/m0/s1
W1N InChIKey InChI 1.06 CTZJKXPNBFSWAK-QMMMGPOBSA-N
W1N SMILES_CANONICAL CACTVS 3.385 N[C@H](CC(O)=O)Cc1ccccc1F
W1N SMILES CACTVS 3.385 N[CH](CC(O)=O)Cc1ccccc1F
W1N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(c(c1)C[C@@H](CC(=O)O)N)F
W1N SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(c(c1)CC(CC(=O)O)N)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W1N "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-amino-4-(2-fluorophenyl)butanoic acid"
W1N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-azanyl-4-(2-fluorophenyl)butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W1N 'Create component' 2022-09-02 RCSB
W1N 'Initial release' 2022-11-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
W1N C7 C 6.897 0.517 1
W1N C8 C 6.897 2.018 2
W1N C9 C 8.196 2.768 3
W1N O1 O 9.495 2.018 4
W1N C1 C 5.598 -4.732 5
W1N C5 C 6.897 -2.482 6
W1N C6 C 5.598 -0.233 7
W1N C4 C 5.598 -1.732 8
W1N C3 C 4.299 -2.482 9
W1N C2 C 4.299 -3.982 10
W1N F F 3.000 -1.732 11
W1N C C 6.897 -3.982 12
W1N N N 8.196 -0.233 13
W1N O O 8.196 4.268 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
W1N C1 C DOUBLE NONE 1
W1N C1 C2 SINGLE NONE 2
W1N C C5 SINGLE NONE 3
W1N C2 C3 DOUBLE NONE 4
W1N C5 C4 DOUBLE NONE 5
W1N C3 C4 SINGLE NONE 6
W1N C3 F SINGLE NONE 7
W1N C4 C6 SINGLE NONE 8
W1N C6 C7 SINGLE NONE 9
W1N C7 C8 SINGLE NONE 10
W1N C7 N SINGLE BEGINWEDGE 11
W1N C8 C9 SINGLE NONE 12
W1N O C9 DOUBLE NONE 13
W1N C9 O1 SINGLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
W1N MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
W1N phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
W1N C1 S1 1
W1N C5 S1 1
W1N C4 S1 1
W1N C3 S1 1
W1N C2 S1 1
W1N C S1 1
W1N C1 F1 1
W1N C F1 1
W1N C5 F1 1
W1N C4 F1 1
W1N C3 F1 1
W1N C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id W1N
_pdbe_chem_comp_rdkit_properties.exactmw 197.085
_pdbe_chem_comp_rdkit_properties.amw 197.209
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 98.415
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.115
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.066
_pdbe_chem_comp_rdkit_properties.chi0v 6.642
_pdbe_chem_comp_rdkit_properties.chi1v 3.321
_pdbe_chem_comp_rdkit_properties.chi2v 1.106
_pdbe_chem_comp_rdkit_properties.chi3v 1.106
_pdbe_chem_comp_rdkit_properties.chi4v 0.630
_pdbe_chem_comp_rdkit_properties.chi0n 18.642
_pdbe_chem_comp_rdkit_properties.chi1n 9.124
_pdbe_chem_comp_rdkit_properties.chi2n 1.106
_pdbe_chem_comp_rdkit_properties.chi3n 1.106
_pdbe_chem_comp_rdkit_properties.chi4n 0.630
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.420
_pdbe_chem_comp_rdkit_properties.kappa1 2.792
_pdbe_chem_comp_rdkit_properties.kappa2 4.715
_pdbe_chem_comp_rdkit_properties.kappa3 3.142
_pdbe_chem_comp_rdkit_properties.Phi 0.940
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
W1N UniChem PDBe W1N
W1N UniChem ZINC ZINC000002385923
W1N UniChem SureChEMBL SCHEMBL288309
W1N UniChem PubChem 2761574
W1N UniChem PubChem 7009868
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
W1N C7 -1.278 1.060 0.308 ETKDGv3 1
W1N C8 -1.914 -0.183 -0.344 ETKDGv3 2
W1N C9 -3.237 -0.504 0.280 ETKDGv3 3
W1N O1 -3.306 -1.408 1.335 ETKDGv3 4
W1N C1 3.212 -1.375 -0.446 ETKDGv3 5
W1N C5 2.021 0.510 0.546 ETKDGv3 6
W1N C6 -0.010 1.535 -0.446 ETKDGv3 7
W1N C4 1.116 0.527 -0.451 ETKDGv3 8
W1N C3 1.240 -0.459 -1.559 ETKDGv3 9
W1N C2 2.232 -1.359 -1.551 ETKDGv3 10
W1N F 0.358 -0.451 -2.589 ETKDGv3 11
W1N C 3.113 -0.486 0.548 ETKDGv3 12
W1N N -1.015 0.820 1.731 ETKDGv3 13
W1N O -4.282 0.072 -0.126 ETKDGv3 14
W1N H1 -2.018 1.890 0.236 ETKDGv3 15
W1N H2 -1.242 -1.062 -0.234 ETKDGv3 16
W1N H3 -2.066 -0.002 -1.430 ETKDGv3 17
W1N H4 -4.192 -1.624 1.777 ETKDGv3 18
W1N H5 4.011 -2.105 -0.445 ETKDGv3 19
W1N H6 1.959 1.219 1.362 ETKDGv3 20
W1N H7 -0.285 1.787 -1.493 ETKDGv3 21
W1N H8 0.344 2.488 0.007 ETKDGv3 22
W1N H9 2.323 -2.076 -2.357 ETKDGv3 23
W1N H10 3.832 -0.494 1.357 ETKDGv3 24
W1N H11 -0.558 1.666 2.143 ETKDGv3 25
W1N H12 -0.358 0.014 1.840 ETKDGv3 26
#