data_W93
#
_chem_comp.id W93
_chem_comp.name (2R)-2-amino-2-(3-methoxyphenyl)ethan-1-ol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H13 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-02
_chem_comp.pdbx_modified_date 2022-10-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 167.205
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W93
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5STK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W93 C7 C1 C 0 1 N N R N N N -3.513 14.974 -34.625 -1.909 0.242 -0.499 C7 W93 1
W93 C8 C2 C 0 1 N N N N N N -2.988 16.065 -35.518 -2.628 0.573 0.811 C8 W93 2
W93 O1 O1 O 0 1 N N N N N N -1.903 16.717 -34.904 -3.929 1.087 0.523 O1 W93 3
W93 C1 C3 C 0 1 Y N N N N N -0.557 12.588 -34.905 1.846 0.321 -0.081 C1 W93 4
W93 C5 C4 C 0 1 Y N N N N N -2.665 13.722 -34.723 -0.494 -0.184 -0.201 C5 W93 5
W93 C6 C5 C 0 1 Y N N N N N -1.329 13.725 -35.094 0.544 0.714 -0.355 C6 W93 6
W93 C4 C6 C 0 1 Y N N N N N -3.211 12.556 -34.216 -0.237 -1.474 0.226 C4 W93 7
W93 C3 C7 C 0 1 Y N N N N N -2.438 11.429 -34.037 1.060 -1.868 0.499 C3 W93 8
W93 C2 C8 C 0 1 Y N N N N N -1.104 11.443 -34.375 2.102 -0.974 0.347 C2 W93 9
W93 N N1 N 0 1 N N N N N N -3.597 15.447 -33.210 -2.615 -0.848 -1.184 N W93 10
W93 O O2 O 0 1 N N N N N N 0.763 12.386 -35.176 2.870 1.201 -0.237 O W93 11
W93 C C9 C 0 1 N N N N N N 1.498 13.460 -35.738 4.185 0.725 0.057 C W93 12
W93 H1 H1 H 0 1 N N N N N N -4.529 14.720 -34.961 -1.895 1.125 -1.138 H1 W93 13
W93 H2 H2 H 0 1 N N N N N N -3.789 16.794 -35.709 -2.720 -0.331 1.413 H2 W93 14
W93 H3 H3 H 0 1 N N N N N N -2.656 15.626 -36.471 -2.056 1.319 1.361 H3 W93 15
W93 H4 H4 H 0 1 N N N N N N -1.580 17.403 -35.476 -4.444 1.319 1.308 H4 W93 16
W93 H5 H5 H 0 1 N N N N N N -0.890 14.611 -35.529 0.343 1.722 -0.687 H5 W93 17
W93 H6 H6 H 0 1 N N N N N N -4.259 12.529 -33.957 -1.050 -2.174 0.345 H6 W93 18
W93 H7 H7 H 0 1 N N N N N N -2.881 10.532 -33.630 1.258 -2.876 0.832 H7 W93 19
W93 H8 H8 H 0 1 N N N N N N -0.494 10.565 -34.226 3.114 -1.283 0.560 H8 W93 20
W93 H9 H9 H 0 1 N N N N N N -3.947 14.710 -32.632 -2.641 -1.678 -0.610 H9 W93 21
W93 H10 H10 H 0 1 N N N N N N -2.687 15.715 -32.894 -3.546 -0.564 -1.451 H10 W93 22
W93 H12 H12 H 0 1 N N N N N N 2.540 13.147 -35.899 4.906 1.525 -0.108 H12 W93 23
W93 H13 H13 H 0 1 N N N N N N 1.049 13.748 -36.700 4.231 0.404 1.098 H13 W93 24
W93 H14 H14 H 0 1 N N N N N N 1.475 14.319 -35.051 4.420 -0.117 -0.594 H14 W93 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W93 C O SING N N 1
W93 C8 O1 SING N N 2
W93 C8 C7 SING N N 3
W93 O C1 SING N N 4
W93 C6 C1 DOUB Y N 5
W93 C6 C5 SING Y N 6
W93 C1 C2 SING Y N 7
W93 C5 C7 SING N N 8
W93 C5 C4 DOUB Y N 9
W93 C7 N SING N N 10
W93 C2 C3 DOUB Y N 11
W93 C4 C3 SING Y N 12
W93 C7 H1 SING N N 13
W93 C8 H2 SING N N 14
W93 C8 H3 SING N N 15
W93 O1 H4 SING N N 16
W93 C6 H5 SING N N 17
W93 C4 H6 SING N N 18
W93 C3 H7 SING N N 19
W93 C2 H8 SING N N 20
W93 N H9 SING N N 21
W93 N H10 SING N N 22
W93 C H12 SING N N 23
W93 C H13 SING N N 24
W93 C H14 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W93 SMILES ACDLabs 12.01 COc1cc(ccc1)C(N)CO
W93 InChI InChI 1.06 InChI=1S/C9H13NO2/c1-12-8-4-2-3-7(5-8)9(10)6-11/h2-5,9,11H,6,10H2,1H3/t9-/m0/s1
W93 InChIKey InChI 1.06 HAHLSZOSVFWLMM-VIFPVBQESA-N
W93 SMILES_CANONICAL CACTVS 3.385 COc1cccc(c1)[C@@H](N)CO
W93 SMILES CACTVS 3.385 COc1cccc(c1)[CH](N)CO
W93 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 COc1cccc(c1)[C@H](CO)N
W93 SMILES "OpenEye OEToolkits" 2.0.7 COc1cccc(c1)C(CO)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W93 "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-2-amino-2-(3-methoxyphenyl)ethan-1-ol
W93 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{R})-2-azanyl-2-(3-methoxyphenyl)ethanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W93 'Create component' 2022-09-02 RCSB
W93 'Initial release' 2022-11-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
W93 C7 C 5.598 1.643 1
W93 C8 C 4.299 2.393 2
W93 O1 O 4.299 3.893 3
W93 C1 C 4.299 -2.107 4
W93 C5 C 5.598 0.142 5
W93 C6 C 4.299 -0.608 6
W93 C4 C 6.897 -0.608 7
W93 C3 C 6.897 -2.107 8
W93 C2 C 5.598 -2.857 9
W93 N N 6.897 2.393 10
W93 O O 3.000 -2.857 11
W93 C C 3.000 -4.357 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
W93 C O SINGLE NONE 1
W93 C8 O1 SINGLE NONE 2
W93 C8 C7 SINGLE NONE 3
W93 O C1 SINGLE NONE 4
W93 C6 C1 DOUBLE NONE 5
W93 C6 C5 SINGLE NONE 6
W93 C1 C2 SINGLE NONE 7
W93 C5 C7 SINGLE NONE 8
W93 C5 C4 DOUBLE NONE 9
W93 C7 N SINGLE BEGINDASH 10
W93 C2 C3 DOUBLE NONE 11
W93 C4 C3 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
W93 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
W93 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
W93 C1 S1 1
W93 C5 S1 1
W93 C6 S1 1
W93 C4 S1 1
W93 C3 S1 1
W93 C2 S1 1
W93 C1 F1 1
W93 C6 F1 1
W93 C5 F1 1
W93 C4 F1 1
W93 C3 F1 1
W93 C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id W93
_pdbe_chem_comp_rdkit_properties.exactmw 167.095
_pdbe_chem_comp_rdkit_properties.amw 167.208
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 90.241
_pdbe_chem_comp_rdkit_properties.tpsa 55.480
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.170
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.132
_pdbe_chem_comp_rdkit_properties.chi0v 5.764
_pdbe_chem_comp_rdkit_properties.chi1v 2.836
_pdbe_chem_comp_rdkit_properties.chi2v 1.038
_pdbe_chem_comp_rdkit_properties.chi3v 1.038
_pdbe_chem_comp_rdkit_properties.chi4v 0.547
_pdbe_chem_comp_rdkit_properties.chi0n 18.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.139
_pdbe_chem_comp_rdkit_properties.chi2n 1.038
_pdbe_chem_comp_rdkit_properties.chi3n 1.038
_pdbe_chem_comp_rdkit_properties.chi4n 0.547
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 1.886
_pdbe_chem_comp_rdkit_properties.kappa2 4.088
_pdbe_chem_comp_rdkit_properties.kappa3 1.964
_pdbe_chem_comp_rdkit_properties.Phi 0.643
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
W93 UniChem PDBe W93
W93 UniChem ZINC ZINC000036949536
W93 UniChem eMolecules 36481109
W93 UniChem Nikkaji J3.551.978E
W93 UniChem SureChEMBL SCHEMBL18793771
W93 UniChem PubChem 45091052
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
W93 C7 1.930 -0.161 -0.245 ETKDGv3 1
W93 C8 2.248 1.009 0.702 ETKDGv3 2
W93 O1 3.571 1.438 0.524 ETKDGv3 3
W93 C1 -1.903 -0.320 0.056 ETKDGv3 4
W93 C5 0.533 -0.705 0.008 ETKDGv3 5
W93 C6 -0.663 0.165 -0.165 ETKDGv3 6
W93 C4 0.360 -1.985 0.387 ETKDGv3 7
W93 C3 -0.995 -2.516 0.629 ETKDGv3 8
W93 C2 -2.064 -1.729 0.473 ETKDGv3 9
W93 N 2.091 0.253 -1.641 ETKDGv3 10
W93 O -3.060 0.461 -0.093 ETKDGv3 11
W93 C -3.072 1.830 -0.486 ETKDGv3 12
W93 H1 2.682 -0.956 -0.041 ETKDGv3 13
W93 H2 2.086 0.699 1.760 ETKDGv3 14
W93 H3 1.573 1.865 0.496 ETKDGv3 15
W93 H4 4.150 0.773 0.980 ETKDGv3 16
W93 H5 -0.523 1.192 -0.471 ETKDGv3 17
W93 H6 1.207 -2.646 0.520 ETKDGv3 18
W93 H7 -1.121 -3.547 0.935 ETKDGv3 19
W93 H8 -3.056 -2.125 0.653 ETKDGv3 20
W93 H9 1.888 -0.567 -2.259 ETKDGv3 21
W93 H10 1.397 1.000 -1.875 ETKDGv3 22
W93 H12 -4.121 2.188 -0.520 ETKDGv3 23
W93 H13 -2.510 2.443 0.250 ETKDGv3 24
W93 H14 -2.626 1.941 -1.497 ETKDGv3 25
#