data_W9Y
#
_chem_comp.id W9Y
_chem_comp.name
(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-1,2,3-triazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H32 N6 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-04
_chem_comp.pdbx_modified_date 2021-10-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 480.515
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W9Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7KAD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W9Y N1 N1 N 0 1 N N N N N N -14.069 21.076 13.996 5.000 -0.207 -0.813 N1 W9Y 1
W9Y N3 N2 N 1 1 N N N N N N -10.973 30.282 16.382 -5.906 -2.594 -0.088 N3 W9Y 2
W9Y C4 C1 C 0 1 N N S N N N -15.507 19.246 13.949 6.645 -1.569 0.384 C4 W9Y 3
W9Y C5 C2 C 0 1 N N S N N N -15.420 20.733 13.725 6.205 -1.031 -0.978 C5 W9Y 4
W9Y C6 C3 C 0 1 N N N N N N -15.635 21.002 12.265 7.326 -0.180 -1.577 C6 W9Y 5
W9Y C7 C4 C 0 1 N N N N N N -15.076 20.619 9.946 8.756 1.841 -1.241 C7 W9Y 6
W9Y C8 C5 C 0 1 N N N N N N -13.950 22.283 14.728 3.789 -1.038 -0.820 C8 W9Y 7
W9Y C10 C6 C 0 1 N N N N N N -12.051 23.894 14.832 1.296 -1.011 -0.652 C10 W9Y 8
W9Y C13 C7 C 0 1 N N N N N N -11.785 27.459 13.562 -2.428 -0.093 -0.311 C13 W9Y 9
W9Y C15 C8 C 0 1 Y N N N N N -13.060 30.091 13.303 -5.007 1.058 -0.145 C15 W9Y 10
W9Y C17 C9 C 0 1 Y N N N N N -13.746 32.038 14.501 -7.382 0.852 0.114 C17 W9Y 11
W9Y C20 C10 C 0 1 Y N N N N N -16.100 34.760 14.103 -10.233 2.912 0.452 C20 W9Y 12
W9Y C21 C11 C 0 1 Y N N N N N -15.423 33.596 13.620 -8.894 2.786 0.303 C21 W9Y 13
W9Y C1 C12 C 0 1 N N S N N N -14.643 20.321 11.352 7.634 0.990 -0.642 C1 W9Y 14
W9Y C11 C13 C 0 1 N N N N N N -11.447 25.020 14.034 0.065 -0.120 -0.478 C11 W9Y 15
W9Y C12 C14 C 0 1 N N N N N N -11.814 26.369 14.616 -1.197 -0.985 -0.486 C12 W9Y 16
W9Y C14 C15 C 0 1 Y N N N N N -12.130 29.820 14.273 -4.892 -0.327 -0.173 C14 W9Y 17
W9Y C16 C16 C 0 1 Y N N N N N -13.871 31.198 13.417 -6.247 1.645 -0.002 C16 W9Y 18
W9Y C18 C17 C 0 1 Y N N N N N -12.798 31.759 15.478 -7.268 -0.531 0.085 C18 W9Y 19
W9Y C19 C18 C 0 1 Y N N N N N -11.975 30.637 15.375 -6.027 -1.119 -0.058 C19 W9Y 20
W9Y C2 C19 C 0 1 N N S N N N -14.520 18.841 11.649 8.075 0.452 0.721 C2 W9Y 21
W9Y C3 C20 C 0 1 N N R N N N -14.470 18.526 13.119 6.953 -0.399 1.320 C3 W9Y 22
W9Y C9 C21 C 0 1 N N N N N N -12.993 23.133 13.951 2.557 -0.146 -0.645 C9 W9Y 23
W9Y N2 N3 N 0 1 N N N N N N -11.288 28.667 14.146 -3.636 -0.922 -0.318 N2 W9Y 24
W9Y N4 N4 N 0 1 Y N N N N N -14.611 33.193 14.576 -8.643 1.450 0.260 N4 W9Y 25
W9Y N5 N5 N 0 1 Y N N N N N -14.731 34.016 15.576 -9.765 0.828 0.377 N5 W9Y 26
W9Y N6 N6 N 0 1 Y N N N N N -15.613 34.956 15.319 -10.730 1.670 0.493 N6 W9Y 27
W9Y O1 O1 O 0 1 N N N N N N -16.407 20.356 9.827 9.123 2.866 -0.315 O1 W9Y 28
W9Y O2 O2 O 0 1 N N N N N N -13.427 20.915 11.516 6.462 1.792 -0.481 O2 W9Y 29
W9Y O3 O3 O 0 1 N N N N N N -13.386 18.320 11.122 8.362 1.545 1.595 O3 W9Y 30
W9Y O4 O4 O 0 1 N N N N N N -14.627 17.180 13.296 7.365 -0.902 2.593 O4 W9Y 31
W9Y O5 O5 O 0 1 N N N N N N -15.287 19.011 15.283 5.598 -2.364 0.944 O5 W9Y 32
W9Y O6 O6 O 0 1 N N N N N N -9.688 29.939 15.968 -4.957 -3.139 0.447 O6 W9Y 33
W9Y O7 O7 O -1 1 N N N N N N -11.268 30.252 17.748 -6.756 -3.264 -0.648 O7 W9Y 34
W9Y H1 H1 H 0 1 N N N N N N -13.651 20.338 14.525 5.054 0.347 0.029 H1 W9Y 35
W9Y H3 H3 H 0 1 N N N N N N -16.507 18.898 13.650 7.539 -2.181 0.262 H3 W9Y 36
W9Y H4 H4 H 0 1 N N N N N N -16.139 21.282 14.352 5.985 -1.865 -1.645 H4 W9Y 37
W9Y H5 H5 H 0 1 N N N N N N -15.564 22.087 12.101 8.220 -0.792 -1.700 H5 W9Y 38
W9Y H6 H6 H 0 1 N N N N N N -16.644 20.656 11.996 7.012 0.203 -2.548 H6 W9Y 39
W9Y H7 H7 H 0 1 N N N N N N -14.511 19.988 9.244 9.620 1.210 -1.446 H7 W9Y 40
W9Y H8 H8 H 0 1 N N N N N N -14.888 21.679 9.719 8.410 2.297 -2.169 H8 W9Y 41
W9Y H9 H9 H 0 1 N N N N N N -13.556 22.084 15.735 3.719 -1.571 -1.768 H9 W9Y 42
W9Y H10 H10 H 0 1 N N N N N N -14.927 22.781 14.809 3.836 -1.756 -0.001 H10 W9Y 43
W9Y H11 H11 H 0 1 N N N N N N -12.599 24.303 15.694 1.343 -1.730 0.166 H11 W9Y 44
W9Y H12 H12 H 0 1 N N N N N N -11.255 23.224 15.188 1.227 -1.545 -1.600 H12 W9Y 45
W9Y H13 H13 H 0 1 N N N N N N -12.802 27.627 13.179 -2.359 0.440 0.637 H13 W9Y 46
W9Y H14 H14 H 0 1 N N N N N N -11.128 27.153 12.735 -2.475 0.625 -1.130 H14 W9Y 47
W9Y H15 H15 H 0 1 N N N N N N -13.157 29.436 12.449 -4.124 1.674 -0.231 H15 W9Y 48
W9Y H16 H16 H 0 1 N N N N N N -16.845 35.350 13.589 -10.792 3.833 0.529 H16 W9Y 49
W9Y H17 H17 H 0 1 N N N N N N -15.553 33.134 12.653 -8.170 3.586 0.232 H17 W9Y 50
W9Y H18 H18 H 0 1 N N N N N N -11.817 24.964 13.000 0.134 0.414 0.470 H18 W9Y 51
W9Y H19 H19 H 0 1 N N N N N N -10.352 24.914 14.038 0.018 0.599 -1.297 H19 W9Y 52
W9Y H20 H20 H 0 1 N N N N N N -11.097 26.622 15.411 -1.150 -1.703 0.333 H20 W9Y 53
W9Y H21 H21 H 0 1 N N N N N N -12.827 26.311 15.041 -1.266 -1.519 -1.433 H21 W9Y 54
W9Y H22 H22 H 0 1 N N N N N N -14.607 31.408 12.655 -6.336 2.721 0.019 H22 W9Y 55
W9Y H23 H23 H 0 1 N N N N N N -12.697 32.419 16.327 -8.151 -1.147 0.176 H23 W9Y 56
W9Y H24 H24 H 0 1 N N N N N N -15.400 18.337 11.223 8.969 -0.160 0.598 H24 W9Y 57
W9Y H25 H25 H 0 1 N N N N N N -13.480 18.830 13.490 6.059 0.213 1.443 H25 W9Y 58
W9Y H26 H26 H 0 1 N N N N N N -12.406 22.483 13.285 2.627 0.388 0.303 H26 W9Y 59
W9Y H27 H27 H 0 1 N N N N N N -13.569 23.851 13.348 2.510 0.572 -1.464 H27 W9Y 60
W9Y H28 H28 H 0 1 N N N N N N -10.983 28.433 15.069 -3.564 -1.883 -0.423 H28 W9Y 61
W9Y H29 H29 H 0 1 N N N N N N -16.689 20.542 8.939 9.831 3.445 -0.630 H29 W9Y 62
W9Y H30 H30 H 0 1 N N N N N N -13.111 20.752 12.397 6.584 2.555 0.101 H30 W9Y 63
W9Y H31 H31 H 0 1 N N N N N N -13.339 17.393 11.325 8.648 1.278 2.479 H31 W9Y 64
W9Y H32 H32 H 0 1 N N N N N N -14.596 16.976 14.223 6.701 -1.451 3.032 H32 W9Y 65
W9Y H33 H33 H 0 1 N N N N N N -15.943 19.467 15.798 5.808 -2.739 1.811 H33 W9Y 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W9Y O1 C7 SING N N 1
W9Y C7 C1 SING N N 2
W9Y O3 C2 SING N N 3
W9Y C1 O2 SING N N 4
W9Y C1 C2 SING N N 5
W9Y C1 C6 SING N N 6
W9Y C2 C3 SING N N 7
W9Y C6 C5 SING N N 8
W9Y C3 O4 SING N N 9
W9Y C3 C4 SING N N 10
W9Y C15 C16 DOUB Y N 11
W9Y C15 C14 SING Y N 12
W9Y C16 C17 SING Y N 13
W9Y C13 N2 SING N N 14
W9Y C13 C12 SING N N 15
W9Y C21 C20 DOUB Y N 16
W9Y C21 N4 SING Y N 17
W9Y C5 C4 SING N N 18
W9Y C5 N1 SING N N 19
W9Y C4 O5 SING N N 20
W9Y C9 C8 SING N N 21
W9Y C9 C10 SING N N 22
W9Y N1 C8 SING N N 23
W9Y C11 C12 SING N N 24
W9Y C11 C10 SING N N 25
W9Y C20 N6 SING Y N 26
W9Y N2 C14 SING N N 27
W9Y C14 C19 DOUB Y N 28
W9Y C17 N4 SING N N 29
W9Y C17 C18 DOUB Y N 30
W9Y N4 N5 SING Y N 31
W9Y N6 N5 DOUB Y N 32
W9Y C19 C18 SING Y N 33
W9Y C19 N3 SING N N 34
W9Y O6 N3 DOUB N N 35
W9Y N3 O7 SING N N 36
W9Y N1 H1 SING N N 37
W9Y C4 H3 SING N N 38
W9Y C5 H4 SING N N 39
W9Y C6 H5 SING N N 40
W9Y C6 H6 SING N N 41
W9Y C7 H7 SING N N 42
W9Y C7 H8 SING N N 43
W9Y C8 H9 SING N N 44
W9Y C8 H10 SING N N 45
W9Y C10 H11 SING N N 46
W9Y C10 H12 SING N N 47
W9Y C13 H13 SING N N 48
W9Y C13 H14 SING N N 49
W9Y C15 H15 SING N N 50
W9Y C20 H16 SING N N 51
W9Y C21 H17 SING N N 52
W9Y C11 H18 SING N N 53
W9Y C11 H19 SING N N 54
W9Y C12 H20 SING N N 55
W9Y C12 H21 SING N N 56
W9Y C16 H22 SING N N 57
W9Y C18 H23 SING N N 58
W9Y C2 H24 SING N N 59
W9Y C3 H25 SING N N 60
W9Y C9 H26 SING N N 61
W9Y C9 H27 SING N N 62
W9Y N2 H28 SING N N 63
W9Y O1 H29 SING N N 64
W9Y O2 H30 SING N N 65
W9Y O3 H31 SING N N 66
W9Y O4 H32 SING N N 67
W9Y O5 H33 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W9Y SMILES ACDLabs 12.01 N(CCCCCCNc2ccc(n1ccnn1)cc2[N+]([O-])=O)C3C(O)C(C(C(C3)(CO)O)O)O
W9Y InChI InChI 1.03 InChI=1S/C21H32N6O7/c28-13-21(32)12-16(18(29)19(30)20(21)31)23-8-4-2-1-3-7-22-15-6-5-14(11-17(15)27(33)34)26-10-9-24-25-26/h5-6,9-11,16,18-20,22-23,28-32H,1-4,7-8,12-13H2/t16-,18-,19+,20-,21-/m0/s1
W9Y InChIKey InChI 1.03 XQDBSGWKEMRNGZ-RQUKQETFSA-N
W9Y SMILES_CANONICAL CACTVS 3.385 OC[C@@]1(O)C[C@H](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3ccnn3)[C@H](O)[C@@H](O)[C@@H]1O
W9Y SMILES CACTVS 3.385 OC[C]1(O)C[CH](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3ccnn3)[CH](O)[CH](O)[CH]1O
W9Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1n2ccnn2)[N+](=O)[O-])NCCCCCCN[C@H]3C[C@@]([C@H]([C@@H]([C@H]3O)O)O)(CO)O
W9Y SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1n2ccnn2)[N+](=O)[O-])NCCCCCCNC3CC(C(C(C3O)O)O)(CO)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W9Y "SYSTEMATIC NAME" ACDLabs 12.01 (1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-1,2,3-triazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol
W9Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-nitro-4-(1,2,3-triazol-1-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W9Y 'Create component' 2020-10-04 RCSB
W9Y 'Initial release' 2021-10-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
W9Y N1 N 9.002 -0.525 1
W9Y N3 N 20.693 1.724 2
W9Y C4 C 6.404 -0.525 3
W9Y C5 C 7.702 0.225 4
W9Y C6 C 7.702 1.724 5
W9Y C7 C 7.154 3.774 6
W9Y C8 C 10.301 0.225 7
W9Y C10 C 12.899 0.225 8
W9Y C13 C 16.796 -0.525 9
W9Y C15 C 19.394 -2.026 10
W9Y C17 C 21.992 -2.026 11
W9Y C20 C 24.915 -4.579 12
W9Y C21 C 23.448 -4.267 13
W9Y C1 C 6.404 2.474 14
W9Y C11 C 14.198 -0.525 15
W9Y C12 C 15.497 0.225 16
W9Y C14 C 19.394 -0.525 17
W9Y C16 C 20.693 -2.776 18
W9Y C18 C 21.992 -0.525 19
W9Y C19 C 20.693 0.225 20
W9Y C2 C 5.104 1.724 21
W9Y C3 C 5.104 0.225 22
W9Y C9 C 11.600 -0.525 23
W9Y N2 N 18.095 0.225 24
W9Y N4 N 23.291 -2.776 25
W9Y N5 N 24.661 -2.165 26
W9Y N6 N 25.665 -3.280 27
W9Y O1 O 8.653 3.774 28
W9Y O2 O 5.654 3.774 29
W9Y O3 O 3.805 2.474 30
W9Y O4 O 3.805 -0.525 31
W9Y O5 O 6.404 -2.026 32
W9Y O6 O 21.992 2.474 33
W9Y O7 O 19.394 2.474 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
W9Y O1 C7 SINGLE NONE 1
W9Y C7 C1 SINGLE NONE 2
W9Y C2 O3 SINGLE BEGINDASH 3
W9Y C1 O2 SINGLE BEGINDASH 4
W9Y C1 C2 SINGLE NONE 5
W9Y C1 C6 SINGLE NONE 6
W9Y C2 C3 SINGLE NONE 7
W9Y C6 C5 SINGLE NONE 8
W9Y C3 O4 SINGLE BEGINWEDGE 9
W9Y C3 C4 SINGLE NONE 10
W9Y C15 C16 DOUBLE NONE 11
W9Y C15 C14 SINGLE NONE 12
W9Y C16 C17 SINGLE NONE 13
W9Y C13 N2 SINGLE NONE 14
W9Y C13 C12 SINGLE NONE 15
W9Y C21 C20 DOUBLE NONE 16
W9Y C21 N4 SINGLE NONE 17
W9Y C5 C4 SINGLE NONE 18
W9Y C5 N1 SINGLE BEGINDASH 19
W9Y C4 O5 SINGLE BEGINDASH 20
W9Y C9 C8 SINGLE NONE 21
W9Y C9 C10 SINGLE NONE 22
W9Y N1 C8 SINGLE NONE 23
W9Y C11 C12 SINGLE NONE 24
W9Y C11 C10 SINGLE NONE 25
W9Y C20 N6 SINGLE NONE 26
W9Y N2 C14 SINGLE NONE 27
W9Y C14 C19 DOUBLE NONE 28
W9Y C17 N4 SINGLE NONE 29
W9Y C17 C18 DOUBLE NONE 30
W9Y N4 N5 SINGLE NONE 31
W9Y N6 N5 DOUBLE NONE 32
W9Y C19 C18 SINGLE NONE 33
W9Y C19 N3 SINGLE NONE 34
W9Y O6 N3 DOUBLE NONE 35
W9Y N3 O7 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
W9Y MurckoScaffold S1 scaffold c1cn(-c2ccc(NCCCCCCNC3CCCCC3)cc2)nn1 InChI=1S/C20H31N5/c1(6-14-21-18-8-4-3-5-9-18)2-7-15-22-19-10-12-20(13-11-19)25-17-16-23-24-25/h10-13,16-18,21-22H,1-9,14-15H2 MEYFPTLIJKDMKK-UHFFFAOYSA-N
W9Y cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
W9Y phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
W9Y N1 S1 1
W9Y C4 S1 1
W9Y C5 S1 1
W9Y C6 S1 1
W9Y C8 S1 1
W9Y C10 S1 1
W9Y C13 S1 1
W9Y C15 S1 1
W9Y C17 S1 1
W9Y C20 S1 1
W9Y C21 S1 1
W9Y C1 S1 1
W9Y C11 S1 1
W9Y C12 S1 1
W9Y C14 S1 1
W9Y C16 S1 1
W9Y C18 S1 1
W9Y C19 S1 1
W9Y C2 S1 1
W9Y C3 S1 1
W9Y C9 S1 1
W9Y N2 S1 1
W9Y N4 S1 1
W9Y N5 S1 1
W9Y N6 S1 1
W9Y C4 F1 1
W9Y C3 F1 1
W9Y C2 F1 1
W9Y C1 F1 1
W9Y C6 F1 1
W9Y C5 F1 1
W9Y C15 F2 1
W9Y C16 F2 1
W9Y C17 F2 1
W9Y C18 F2 1
W9Y C19 F2 1
W9Y C14 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id W9Y
_pdbe_chem_comp_rdkit_properties.exactmw 480.233
_pdbe_chem_comp_rdkit_properties.amw 480.522
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.619
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 241.255
_pdbe_chem_comp_rdkit_properties.tpsa 199.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.635
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.126
_pdbe_chem_comp_rdkit_properties.chi0v 16.041
_pdbe_chem_comp_rdkit_properties.chi1v 8.325
_pdbe_chem_comp_rdkit_properties.chi2v 3.515
_pdbe_chem_comp_rdkit_properties.chi3v 3.515
_pdbe_chem_comp_rdkit_properties.chi4v 2.046
_pdbe_chem_comp_rdkit_properties.chi0n 48.041
_pdbe_chem_comp_rdkit_properties.chi1n 23.760
_pdbe_chem_comp_rdkit_properties.chi2n 3.515
_pdbe_chem_comp_rdkit_properties.chi3n 3.515
_pdbe_chem_comp_rdkit_properties.chi4n 2.046
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.680
_pdbe_chem_comp_rdkit_properties.kappa1 6.748
_pdbe_chem_comp_rdkit_properties.kappa2 11.640
_pdbe_chem_comp_rdkit_properties.kappa3 6.055
_pdbe_chem_comp_rdkit_properties.Phi 2.310
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
W9Y UniChem ChEMBL CHEMBL5196220
W9Y UniChem PDBe W9Y
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
W9Y N1 -3.113 0.016 0.825 ETKDGv3 1
W9Y N3 4.903 -1.050 1.901 ETKDGv3 2
W9Y C4 -5.223 -1.369 0.508 ETKDGv3 3
W9Y C5 -4.595 0.015 0.784 ETKDGv3 4
W9Y C6 -5.183 1.092 -0.158 ETKDGv3 5
W9Y C7 -7.305 2.483 -0.008 ETKDGv3 6
W9Y C8 -2.435 -0.527 -0.364 ETKDGv3 7
W9Y C10 -0.193 -0.874 -1.487 ETKDGv3 8
W9Y C13 3.348 0.798 -1.614 ETKDGv3 9
W9Y C15 6.315 0.822 -1.082 ETKDGv3 10
W9Y C17 8.138 -0.015 0.319 ETKDGv3 11
W9Y C20 11.554 -0.597 1.333 ETKDGv3 12
W9Y C21 10.266 -0.749 1.592 ETKDGv3 13
W9Y C1 -6.752 1.056 -0.238 ETKDGv3 14
W9Y C11 1.334 -0.739 -1.379 ETKDGv3 15
W9Y C12 1.816 0.707 -1.591 ETKDGv3 16
W9Y C14 5.335 0.260 -0.115 ETKDGv3 17
W9Y C16 7.629 0.693 -0.877 ETKDGv3 18
W9Y C18 7.258 -0.536 1.191 ETKDGv3 19
W9Y C19 5.794 -0.416 0.969 ETKDGv3 20
W9Y C2 -7.382 0.072 0.807 ETKDGv3 21
W9Y C3 -6.763 -1.352 0.762 ETKDGv3 22
W9Y C9 -0.926 -0.264 -0.283 ETKDGv3 23
W9Y N2 3.925 0.494 -0.303 ETKDGv3 24
W9Y N4 9.557 -0.135 0.524 ETKDGv3 25
W9Y N5 10.534 0.367 -0.341 ETKDGv3 26
W9Y N6 11.697 0.113 0.103 ETKDGv3 27
W9Y O1 -7.001 2.939 1.283 ETKDGv3 28
W9Y O2 -7.154 0.681 -1.537 ETKDGv3 29
W9Y O3 -8.769 -0.038 0.595 ETKDGv3 30
W9Y O4 -7.052 -2.000 1.975 ETKDGv3 31
W9Y O5 -4.981 -1.758 -0.822 ETKDGv3 32
W9Y O6 3.914 -1.694 1.493 ETKDGv3 33
W9Y O7 5.267 -1.165 3.223 ETKDGv3 34
W9Y H1 -2.796 1.002 0.981 ETKDGv3 35
W9Y H3 -4.737 -2.101 1.196 ETKDGv3 36
W9Y H4 -4.904 0.296 1.816 ETKDGv3 37
W9Y H5 -4.768 0.976 -1.180 ETKDGv3 38
W9Y H6 -4.820 2.081 0.196 ETKDGv3 39
W9Y H7 -6.863 3.175 -0.760 ETKDGv3 40
W9Y H8 -8.408 2.493 -0.157 ETKDGv3 41
W9Y H9 -2.581 -1.627 -0.398 ETKDGv3 42
W9Y H10 -2.827 -0.070 -1.296 ETKDGv3 43
W9Y H11 -0.549 -0.399 -2.428 ETKDGv3 44
W9Y H12 -0.437 -1.958 -1.544 ETKDGv3 45
W9Y H13 3.749 0.093 -2.375 ETKDGv3 46
W9Y H14 3.636 1.830 -1.906 ETKDGv3 47
W9Y H15 5.977 1.358 -1.959 ETKDGv3 48
W9Y H16 12.372 -0.948 1.947 ETKDGv3 49
W9Y H17 9.841 -1.245 2.454 ETKDGv3 50
W9Y H18 1.791 -1.386 -2.160 ETKDGv3 51
W9Y H19 1.672 -1.118 -0.391 ETKDGv3 52
W9Y H20 1.429 1.082 -2.563 ETKDGv3 53
W9Y H21 1.427 1.369 -0.788 ETKDGv3 54
W9Y H22 8.320 1.117 -1.593 ETKDGv3 55
W9Y H23 7.603 -1.070 2.065 ETKDGv3 56
W9Y H24 -7.194 0.475 1.831 ETKDGv3 57
W9Y H25 -7.269 -1.909 -0.064 ETKDGv3 58
W9Y H26 -0.531 -0.706 0.658 ETKDGv3 59
W9Y H27 -0.755 0.833 -0.258 ETKDGv3 60
W9Y H28 3.293 0.483 0.530 ETKDGv3 61
W9Y H29 -7.383 3.853 1.350 ETKDGv3 62
W9Y H30 -6.779 -0.214 -1.738 ETKDGv3 63
W9Y H31 -9.214 0.627 1.182 ETKDGv3 64
W9Y H32 -6.951 -2.975 1.813 ETKDGv3 65
W9Y H33 -5.099 -2.744 -0.860 ETKDGv3 66
#