data_WDL
#
_chem_comp.id WDL
_chem_comp.name 1,3,5-triazine-2,4,6-triol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C3 H3 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Cyanuric Acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-12-19
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 129.074
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WDL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3ZGS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WDL NAE NAE N 0 1 Y N N N N N -59.887 -9.718 -8.298 -1.327 -0.015 0.035 NAE WDL 1
WDL CAH CAH C 0 1 Y N N N N N -59.030 -10.234 -9.179 -0.651 -1.157 0.021 CAH WDL 2
WDL OAB OAB O 0 1 N N N N N N -58.655 -11.526 -8.903 -1.314 -2.336 0.036 OAB WDL 3
WDL N6 N6 N 0 1 Y N N N N N -58.537 -9.623 -10.262 0.677 -1.142 -0.007 N6 WDL 4
WDL CAI CAI C 0 1 Y N N N N N -58.989 -8.382 -10.414 1.327 0.015 -0.022 CAI WDL 5
WDL NAF NAF N 0 1 Y N N N N N -59.845 -7.727 -9.625 0.651 1.157 -0.007 NAF WDL 6
WDL OAC OAC O 0 1 N N N N N N -58.495 -7.726 -11.504 2.680 0.030 -0.051 OAC WDL 7
WDL CAG CAG C 0 1 Y N N N N N -60.251 -8.468 -8.583 -0.676 1.142 0.021 CAG WDL 8
WDL OAA OAA O 0 1 N N N N N N -61.135 -7.952 -7.667 -1.366 2.306 0.036 OAA WDL 9
WDL HAB HAB H 0 1 N N N N N N -59.090 -11.820 -8.111 -1.526 -2.680 -0.843 HAB WDL 10
WDL HAC HAC H 0 1 N N N N N N -58.858 -6.849 -11.538 3.092 0.034 0.823 HAC WDL 11
WDL HAA HAA H 0 1 N N N N N N -61.362 -7.063 -7.912 -1.584 2.646 -0.843 HAA WDL 12
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WDL OAB CAH SING N N 1
WDL CAH NAE DOUB Y N 2
WDL CAH N6 SING Y N 3
WDL CAI OAC SING N N 4
WDL CAI NAF SING Y N 5
WDL CAI N6 DOUB Y N 6
WDL NAF CAG DOUB Y N 7
WDL CAG OAA SING N N 8
WDL CAG NAE SING Y N 9
WDL OAB HAB SING N N 10
WDL OAC HAC SING N N 11
WDL OAA HAA SING N N 12
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WDL SMILES ACDLabs 12.01 Oc1nc(O)nc(O)n1
WDL InChI InChI 1.03 InChI=1S/C3H3N3O3/c7-1-4-2(8)6-3(9)5-1/h(H3,4,5,6,7,8,9)
WDL InChIKey InChI 1.03 ZFSLODLOARCGLH-UHFFFAOYSA-N
WDL SMILES_CANONICAL CACTVS 3.385 Oc1nc(O)nc(O)n1
WDL SMILES CACTVS 3.385 Oc1nc(O)nc(O)n1
WDL SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1(nc(nc(n1)O)O)O
WDL SMILES "OpenEye OEToolkits" 1.9.2 c1(nc(nc(n1)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WDL "SYSTEMATIC NAME" ACDLabs 12.01 1,3,5-triazine-2,4,6-triol
WDL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 1,3,5-triazine-2,4,6-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WDL 'Create component' 2012-12-19 EBI
WDL 'Initial release' 2013-05-22 RCSB
WDL 'Modify descriptor' 2014-09-05 RCSB
WDL 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id WDL
_pdbx_chem_comp_synonyms.name "Cyanuric Acid"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id WDL
_pdbe_chem_comp_synonyms.name 'Cyanuric Acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WDL NAE N 6.897 -0.465 1
WDL CAH C 5.598 -1.215 2
WDL OAB O 5.598 -2.715 3
WDL N6 N 4.299 -0.465 4
WDL CAI C 4.299 1.035 5
WDL NAF N 5.598 1.785 6
WDL OAC O 3.000 1.785 7
WDL CAG C 6.897 1.035 8
WDL OAA O 8.196 1.785 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WDL OAB CAH SINGLE NONE 1
WDL CAH NAE DOUBLE NONE 2
WDL CAH N6 SINGLE NONE 3
WDL CAI OAC SINGLE NONE 4
WDL CAI NAF SINGLE NONE 5
WDL CAI N6 DOUBLE NONE 6
WDL NAF CAG DOUBLE NONE 7
WDL CAG OAA SINGLE NONE 8
WDL CAG NAE SINGLE NONE 9
#
_pdbe_chem_comp_substructure.comp_id WDL
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles c1ncncn1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C3H3N3/c1-4-2-6-3-5-1/h1-3H
_pdbe_chem_comp_substructure.substructure_inchikeys JIHQDMXYYFUGFV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WDL NAE S1 1
WDL CAH S1 1
WDL N6 S1 1
WDL CAI S1 1
WDL NAF S1 1
WDL CAG S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WDL
_pdbe_chem_comp_rdkit_properties.exactmw 129.017
_pdbe_chem_comp_rdkit_properties.amw 129.075
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 12
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 53.948
_pdbe_chem_comp_rdkit_properties.tpsa 99.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.399
_pdbe_chem_comp_rdkit_properties.CrippenMR 22.991
_pdbe_chem_comp_rdkit_properties.chi0v 4.066
_pdbe_chem_comp_rdkit_properties.chi1v 1.954
_pdbe_chem_comp_rdkit_properties.chi2v 0.574
_pdbe_chem_comp_rdkit_properties.chi3v 0.574
_pdbe_chem_comp_rdkit_properties.chi4v 0.320
_pdbe_chem_comp_rdkit_properties.chi0n 7.066
_pdbe_chem_comp_rdkit_properties.chi1n 3.179
_pdbe_chem_comp_rdkit_properties.chi2n 0.574
_pdbe_chem_comp_rdkit_properties.chi3n 0.574
_pdbe_chem_comp_rdkit_properties.chi4n 0.320
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.590
_pdbe_chem_comp_rdkit_properties.kappa1 2.810
_pdbe_chem_comp_rdkit_properties.kappa2 1.731
_pdbe_chem_comp_rdkit_properties.kappa3 1.150
_pdbe_chem_comp_rdkit_properties.Phi 0.540
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
WDL UniChem ChEMBL CHEMBL243087
WDL UniChem PDBe WDL
WDL UniChem 'KEGG LIGAND' C06554
WDL UniChem ChEBI 17696
WDL UniChem ChEBI 38028
WDL UniChem ZINC ZINC000018044615
WDL UniChem fdasrs H497R4QKTZ
WDL UniChem NMRShiftDB 10016338
WDL UniChem ACTor 40580-20-9
WDL UniChem BRENDA 163791
WDL UniChem BRENDA 2998
WDL UniChem BRENDA 92978
WDL UniChem Rhea 38028
WDL UniChem ChemicalBook CB5852763
WDL UniChem 'EPA CompTox Dashboard' DTXSID7024873
WDL UniChem eMolecules 1012613
WDL UniChem eMolecules 486479
WDL UniChem SureChEMBL SCHEMBL20706
WDL UniChem HMDB HMDB0041861
WDL UniChem 'PubChem TPHARMA' 14769342
WDL UniChem 'PubChem TPHARMA' 15461898
WDL UniChem PubChem 7956
WDL UniChem Mcule MCULE-2586692744
WDL UniChem ACTor 108-80-5
WDL UniChem ACTor 27026-93-3
WDL UniChem Nikkaji J2.429E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WDL NAE 0.019 -1.477 0.345 ETKDGv3 1
WDL CAH -1.159 -0.938 0.238 ETKDGv3 2
WDL OAB -2.295 -1.732 0.338 ETKDGv3 3
WDL N6 -1.283 0.475 0.017 ETKDGv3 4
WDL CAI -0.219 1.216 -0.076 ETKDGv3 5
WDL NAF 1.081 0.619 0.043 ETKDGv3 6
WDL OAC -0.344 2.583 -0.290 ETKDGv3 7
WDL CAG 1.195 -0.662 0.243 ETKDGv3 8
WDL OAA 2.452 -1.245 0.359 ETKDGv3 9
WDL HAB -3.219 -1.325 0.256 ETKDGv3 10
WDL HAC 0.477 3.171 -0.365 ETKDGv3 11
WDL HAA 3.295 -0.687 0.290 ETKDGv3 12
#