data_WJ2
#
_chem_comp.id WJ2
_chem_comp.name "(2R)-2-chloro-3-phenylpropanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H9 Cl O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-09-25
_chem_comp.pdbx_modified_date 2013-05-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 184.620
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WJ2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4H81
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WJ2 CL1 CL1 CL 0 0 N N N N N N -8.011 -30.221 15.079 1.003 -1.612 0.527 CL1 WJ2 1
WJ2 C02 C02 C 0 1 N N R N N N -8.787 -31.648 14.494 1.187 0.165 0.286 C02 WJ2 2
WJ2 C03 C03 C 0 1 N N N N N N -8.137 -32.014 13.204 2.618 0.479 -0.069 C03 WJ2 3
WJ2 O04 O04 O 0 1 N N N N N N -7.124 -32.759 13.216 3.430 1.034 0.845 O04 WJ2 4
WJ2 O05 O05 O 0 1 N N N N N N -8.617 -31.569 12.117 3.034 0.231 -1.176 O05 WJ2 5
WJ2 C06 C06 C 0 1 N N N N N N -8.711 -32.754 15.502 0.268 0.624 -0.849 C06 WJ2 6
WJ2 C07 C07 C 0 1 Y N N N N N -9.155 -32.417 16.893 -1.169 0.423 -0.443 C07 WJ2 7
WJ2 C08 C08 C 0 1 Y N N N N N -8.350 -32.715 17.981 -1.804 -0.774 -0.717 C08 WJ2 8
WJ2 C09 C09 C 0 1 Y N N N N N -8.746 -32.401 19.274 -3.122 -0.959 -0.345 C09 WJ2 9
WJ2 C10 C10 C 0 1 Y N N N N N -9.960 -31.769 19.481 -3.806 0.054 0.301 C10 WJ2 10
WJ2 C11 C11 C 0 1 Y N N N N N -10.767 -31.470 18.393 -3.171 1.251 0.575 C11 WJ2 11
WJ2 C12 C12 C 0 1 Y N N N N N -10.368 -31.787 17.100 -1.852 1.434 0.207 C12 WJ2 12
WJ2 H1 H1 H 0 1 N N N N N N -9.840 -31.387 14.315 0.918 0.686 1.204 H1 WJ2 13
WJ2 H2 H2 H 0 1 N N N N N N -6.825 -32.903 12.326 4.339 1.217 0.571 H2 WJ2 14
WJ2 H3 H3 H 0 1 N N N N N N -9.340 -33.581 15.140 0.444 1.680 -1.054 H3 WJ2 15
WJ2 H4 H4 H 0 1 N N N N N N -7.664 -33.087 15.556 0.478 0.040 -1.745 H4 WJ2 16
WJ2 H5 H5 H 0 1 N N N N N N -7.398 -33.200 17.820 -1.269 -1.566 -1.222 H5 WJ2 17
WJ2 H6 H6 H 0 1 N N N N N N -8.111 -32.648 20.112 -3.618 -1.894 -0.559 H6 WJ2 18
WJ2 H7 H7 H 0 1 N N N N N N -10.276 -31.511 20.481 -4.836 -0.090 0.591 H7 WJ2 19
WJ2 H8 H8 H 0 1 N N N N N N -11.718 -30.984 18.553 -3.706 2.043 1.079 H8 WJ2 20
WJ2 H9 H9 H 0 1 N N N N N N -11.003 -31.542 16.261 -1.355 2.368 0.425 H9 WJ2 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WJ2 O05 C03 DOUB N N 1
WJ2 C03 O04 SING N N 2
WJ2 C03 C02 SING N N 3
WJ2 C02 CL1 SING N N 4
WJ2 C02 C06 SING N N 5
WJ2 C06 C07 SING N N 6
WJ2 C07 C12 DOUB Y N 7
WJ2 C07 C08 SING Y N 8
WJ2 C12 C11 SING Y N 9
WJ2 C08 C09 DOUB Y N 10
WJ2 C11 C10 DOUB Y N 11
WJ2 C09 C10 SING Y N 12
WJ2 C02 H1 SING N N 13
WJ2 O04 H2 SING N N 14
WJ2 C06 H3 SING N N 15
WJ2 C06 H4 SING N N 16
WJ2 C08 H5 SING N N 17
WJ2 C09 H6 SING N N 18
WJ2 C10 H7 SING N N 19
WJ2 C11 H8 SING N N 20
WJ2 C12 H9 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WJ2 SMILES ACDLabs 12.01 ClC(C(=O)O)Cc1ccccc1
WJ2 InChI InChI 1.03 InChI=1S/C9H9ClO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6H2,(H,11,12)/t8-/m1/s1
WJ2 InChIKey InChI 1.03 LIDRHDRWTSPELB-MRVPVSSYSA-N
WJ2 SMILES_CANONICAL CACTVS 3.370 OC(=O)[C@H](Cl)Cc1ccccc1
WJ2 SMILES CACTVS 3.370 OC(=O)[CH](Cl)Cc1ccccc1
WJ2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C[C@H](C(=O)O)Cl
WJ2 SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)CC(C(=O)O)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WJ2 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-chloro-3-phenylpropanoic acid"
WJ2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-chloranyl-3-phenyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WJ2 'Create component' 2012-09-25 RCSB
WJ2 'Initial release' 2013-06-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WJ2 CL1 Cl 6.897 0.285 1
WJ2 C02 C 5.598 1.035 2
WJ2 C03 C 5.598 2.535 3
WJ2 O04 O 4.299 3.285 4
WJ2 O05 O 6.897 3.285 5
WJ2 C06 C 4.299 0.285 6
WJ2 C07 C 4.299 -1.215 7
WJ2 C08 C 5.598 -1.965 8
WJ2 C09 C 5.598 -3.465 9
WJ2 C10 C 4.299 -4.215 10
WJ2 C11 C 3.000 -3.465 11
WJ2 C12 C 3.000 -1.965 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WJ2 O05 C03 DOUBLE NONE 1
WJ2 C03 O04 SINGLE NONE 2
WJ2 C03 C02 SINGLE NONE 3
WJ2 C02 CL1 SINGLE BEGINDASH 4
WJ2 C02 C06 SINGLE NONE 5
WJ2 C06 C07 SINGLE NONE 6
WJ2 C07 C12 DOUBLE NONE 7
WJ2 C07 C08 SINGLE NONE 8
WJ2 C12 C11 SINGLE NONE 9
WJ2 C08 C09 DOUBLE NONE 10
WJ2 C11 C10 DOUBLE NONE 11
WJ2 C09 C10 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WJ2 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
WJ2 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WJ2 C07 S1 1
WJ2 C08 S1 1
WJ2 C09 S1 1
WJ2 C10 S1 1
WJ2 C11 S1 1
WJ2 C12 S1 1
WJ2 C07 F1 1
WJ2 C12 F1 1
WJ2 C11 F1 1
WJ2 C10 F1 1
WJ2 C09 F1 1
WJ2 C08 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WJ2
_pdbe_chem_comp_rdkit_properties.exactmw 184.029
_pdbe_chem_comp_rdkit_properties.amw 184.622
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 88.517
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.866
_pdbe_chem_comp_rdkit_properties.CrippenMR 47.157
_pdbe_chem_comp_rdkit_properties.chi0v 6.450
_pdbe_chem_comp_rdkit_properties.chi1v 3.225
_pdbe_chem_comp_rdkit_properties.chi2v 1.163
_pdbe_chem_comp_rdkit_properties.chi3v 1.163
_pdbe_chem_comp_rdkit_properties.chi4v 0.568
_pdbe_chem_comp_rdkit_properties.chi0n 14.694
_pdbe_chem_comp_rdkit_properties.chi1n 7.255
_pdbe_chem_comp_rdkit_properties.chi2n 0.914
_pdbe_chem_comp_rdkit_properties.chi3n 0.914
_pdbe_chem_comp_rdkit_properties.chi4n 0.473
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.020
_pdbe_chem_comp_rdkit_properties.kappa1 2.740
_pdbe_chem_comp_rdkit_properties.kappa2 4.118
_pdbe_chem_comp_rdkit_properties.kappa3 2.548
_pdbe_chem_comp_rdkit_properties.Phi 0.940
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
WJ2 UniChem PDBe WJ2
WJ2 UniChem ZINC ZINC000002507433
WJ2 UniChem SureChEMBL SCHEMBL2397070
WJ2 UniChem 'PubChem TPHARMA' 16557444
WJ2 UniChem PubChem 11458104
WJ2 UniChem 'EPA CompTox Dashboard' DTXSID50466475
WJ2 UniChem BRENDA 213705
WJ2 UniChem Nikkaji J609.871A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WJ2 CL1 3.519 -1.634 0.003 ETKDGv3 1
WJ2 C02 2.026 -0.732 0.376 ETKDGv3 2
WJ2 C03 2.289 0.737 0.224 ETKDGv3 3
WJ2 O04 2.747 1.243 -0.990 ETKDGv3 4
WJ2 O05 2.081 1.518 1.190 ETKDGv3 5
WJ2 C06 0.893 -1.202 -0.550 ETKDGv3 6
WJ2 C07 -0.425 -0.569 -0.183 ETKDGv3 7
WJ2 C08 -0.891 0.645 -0.901 ETKDGv3 8
WJ2 C09 -2.044 1.231 -0.557 ETKDGv3 9
WJ2 C10 -2.859 0.674 0.542 ETKDGv3 10
WJ2 C11 -2.442 -0.416 1.198 ETKDGv3 11
WJ2 C12 -1.167 -1.064 0.824 ETKDGv3 12
WJ2 H1 1.756 -0.959 1.431 ETKDGv3 13
WJ2 H2 2.919 2.234 -1.108 ETKDGv3 14
WJ2 H3 1.146 -0.968 -1.608 ETKDGv3 15
WJ2 H4 0.799 -2.308 -0.480 ETKDGv3 16
WJ2 H5 -0.297 1.063 -1.704 ETKDGv3 17
WJ2 H6 -2.381 2.116 -1.081 ETKDGv3 18
WJ2 H7 -3.791 1.150 0.816 ETKDGv3 19
WJ2 H8 -3.037 -0.824 2.005 ETKDGv3 20
WJ2 H9 -0.839 -1.937 1.375 ETKDGv3 21
#