data_WO7
#
_chem_comp.id WO7
_chem_comp.name 1-(1,4-diazepan-1-yl)ethan-1-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H14 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-30
_chem_comp.pdbx_modified_date 2020-11-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 142.199
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WO7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RYG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WO7 C10 C1 C 0 1 N N N N N N -32.297 31.552 -26.147 -0.109 -1.001 1.008 C10 WO7 1
WO7 C01 C2 C 0 1 N N N N N N -35.174 31.416 -25.699 2.392 -1.226 -0.227 C01 WO7 2
WO7 C02 C3 C 0 1 N N N N N N -34.187 31.015 -24.606 1.704 0.111 -0.119 C02 WO7 3
WO7 C05 C4 C 0 1 N N N N N N -31.887 30.676 -23.726 -0.149 1.526 0.569 C05 WO7 4
WO7 C06 C5 C 0 1 N N N N N N -30.398 30.989 -23.945 -1.655 1.431 0.271 C06 WO7 5
WO7 C07 C6 C 0 1 N N N N N N -30.037 32.482 -23.979 -1.887 0.467 -0.872 C07 WO7 6
WO7 C09 C7 C 0 1 N N N N N N -31.484 32.799 -25.872 -0.987 -1.663 -0.080 C09 WO7 7
WO7 N04 N1 N 0 1 N N N N N N -32.746 31.083 -24.835 0.500 0.203 0.479 N04 WO7 8
WO7 N08 N2 N 0 1 N N N N N N -30.223 33.143 -25.261 -2.131 -0.868 -0.329 N08 WO7 9
WO7 O03 O1 O 0 1 N N N N N N -34.629 30.646 -23.567 2.235 1.104 -0.570 O03 WO7 10
WO7 H1 H1 H 0 1 N N N N N N -33.160 31.789 -26.787 -0.728 -0.746 1.868 H1 WO7 11
WO7 H2 H2 H 0 1 N N N N N N -31.676 30.788 -26.637 0.671 -1.696 1.317 H2 WO7 12
WO7 H3 H3 H 0 1 N N N N N N -36.202 31.292 -25.329 3.019 -1.384 0.651 H3 WO7 13
WO7 H4 H4 H 0 1 N N N N N N -35.008 32.468 -25.975 1.643 -2.016 -0.285 H4 WO7 14
WO7 H5 H5 H 0 1 N N N N N N -35.023 30.777 -26.582 3.011 -1.245 -1.123 H5 WO7 15
WO7 H6 H6 H 0 1 N N N N N N -32.221 31.200 -22.818 0.315 2.200 -0.150 H6 WO7 16
WO7 H7 H7 H 0 1 N N N N N N -31.996 29.591 -23.584 -0.009 1.924 1.574 H7 WO7 17
WO7 H8 H8 H 0 1 N N N N N N -30.095 30.545 -24.905 -2.179 1.075 1.158 H8 WO7 18
WO7 H9 H9 H 0 1 N N N N N N -29.829 30.521 -23.128 -2.033 2.415 -0.004 H9 WO7 19
WO7 H10 H10 H 0 1 N N N N N N -28.978 32.581 -23.697 -2.753 0.789 -1.450 H10 WO7 20
WO7 H11 H11 H 0 1 N N N N N N -30.664 32.999 -23.237 -1.007 0.446 -1.515 H11 WO7 21
WO7 H12 H12 H 0 1 N N N N N N -31.372 33.225 -26.880 -0.410 -1.764 -0.999 H12 WO7 22
WO7 H13 H13 H 0 1 N N N N N N -32.192 33.409 -25.292 -1.300 -2.651 0.258 H13 WO7 23
WO7 H14 H14 H 0 1 N N N N N N -29.482 32.870 -25.875 -2.804 -1.369 -0.889 H14 WO7 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WO7 C10 C09 SING N N 1
WO7 C10 N04 SING N N 2
WO7 C09 N08 SING N N 3
WO7 C01 C02 SING N N 4
WO7 N08 C07 SING N N 5
WO7 N04 C02 SING N N 6
WO7 N04 C05 SING N N 7
WO7 C02 O03 DOUB N N 8
WO7 C07 C06 SING N N 9
WO7 C06 C05 SING N N 10
WO7 C10 H1 SING N N 11
WO7 C10 H2 SING N N 12
WO7 C01 H3 SING N N 13
WO7 C01 H4 SING N N 14
WO7 C01 H5 SING N N 15
WO7 C05 H6 SING N N 16
WO7 C05 H7 SING N N 17
WO7 C06 H8 SING N N 18
WO7 C06 H9 SING N N 19
WO7 C07 H10 SING N N 20
WO7 C07 H11 SING N N 21
WO7 C09 H12 SING N N 22
WO7 C09 H13 SING N N 23
WO7 N08 H14 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WO7 SMILES ACDLabs 12.01 C1CNCCCN1C(C)=O
WO7 InChI InChI 1.03 InChI=1S/C7H14N2O/c1-7(10)9-5-2-3-8-4-6-9/h8H,2-6H2,1H3
WO7 InChIKey InChI 1.03 TWJPZMYNUBAUGA-UHFFFAOYSA-N
WO7 SMILES_CANONICAL CACTVS 3.385 CC(=O)N1CCCNCC1
WO7 SMILES CACTVS 3.385 CC(=O)N1CCCNCC1
WO7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(=O)N1CCCNCC1
WO7 SMILES "OpenEye OEToolkits" 2.0.7 CC(=O)N1CCCNCC1
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WO7 "SYSTEMATIC NAME" ACDLabs 12.01 1-(1,4-diazepan-1-yl)ethan-1-one
WO7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-(1,4-diazepan-1-yl)ethanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WO7 'Create component' 2020-10-30 RCSB
WO7 'Initial release' 2020-11-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WO7 C10 C 3.334 -0.286 1
WO7 C01 C 5.984 -3.187 2
WO7 C02 C 4.685 -2.437 3
WO7 C05 C 6.037 -0.286 4
WO7 C06 C 6.370 1.176 5
WO7 C07 C 5.435 2.349 6
WO7 C09 C 3.000 1.176 7
WO7 N04 N 4.685 -0.937 8
WO7 N08 N 3.935 2.349 9
WO7 O03 O 3.386 -3.187 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WO7 C10 C09 SINGLE NONE 1
WO7 C10 N04 SINGLE NONE 2
WO7 C09 N08 SINGLE NONE 3
WO7 C01 C02 SINGLE NONE 4
WO7 N08 C07 SINGLE NONE 5
WO7 N04 C02 SINGLE NONE 6
WO7 N04 C05 SINGLE NONE 7
WO7 C02 O03 DOUBLE NONE 8
WO7 C07 C06 SINGLE NONE 9
WO7 C06 C05 SINGLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WO7 MurckoScaffold S1 scaffold C1CNCCNC1 InChI=1S/C5H12N2/c1-2-6-4-5-7-3-1/h6-7H,1-5H2 FQUYSHZXSKYCSY-UHFFFAOYSA-N
WO7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
WO7 Z168883358 F2 fragment CC(=O)N1CCCNCC1 InChI=1S/C7H14N2O/c1-7(10)9-5-2-3-8-4-6-9/h8H,2-6H2,1H3 TWJPZMYNUBAUGA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WO7 C10 S1 1
WO7 C05 S1 1
WO7 C06 S1 1
WO7 C07 S1 1
WO7 C09 S1 1
WO7 N04 S1 1
WO7 N08 S1 1
WO7 N04 F1 1
WO7 C02 F1 1
WO7 O03 F1 1
WO7 C01 F1 1
WO7 C01 F2 1
WO7 C02 F2 1
WO7 O03 F2 1
WO7 N04 F2 1
WO7 C05 F2 1
WO7 C06 F2 1
WO7 C07 F2 1
WO7 N08 F2 1
WO7 C09 F2 1
WO7 C10 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WO7
_pdbe_chem_comp_rdkit_properties.exactmw 142.111
_pdbe_chem_comp_rdkit_properties.amw 142.202
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.857
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 81.122
_pdbe_chem_comp_rdkit_properties.tpsa 32.340
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.172
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.741
_pdbe_chem_comp_rdkit_properties.chi0v 4.803
_pdbe_chem_comp_rdkit_properties.chi1v 2.322
_pdbe_chem_comp_rdkit_properties.chi2v 0.700
_pdbe_chem_comp_rdkit_properties.chi3v 0.700
_pdbe_chem_comp_rdkit_properties.chi4v 0.341
_pdbe_chem_comp_rdkit_properties.chi0n 18.803
_pdbe_chem_comp_rdkit_properties.chi1n 9.269
_pdbe_chem_comp_rdkit_properties.chi2n 0.700
_pdbe_chem_comp_rdkit_properties.chi3n 0.700
_pdbe_chem_comp_rdkit_properties.chi4n 0.341
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.221
_pdbe_chem_comp_rdkit_properties.kappa2 3.562
_pdbe_chem_comp_rdkit_properties.kappa3 1.988
_pdbe_chem_comp_rdkit_properties.Phi 0.435
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
WO7 UniChem PDBe WO7
WO7 UniChem ZINC ZINC000004521106
WO7 UniChem eMolecules 474743
WO7 UniChem SureChEMBL SCHEMBL44868
WO7 UniChem 'PubChem TPHARMA' 14793823
WO7 UniChem Mcule MCULE-1264485184
WO7 UniChem Nikkaji J2.146.216K
WO7 UniChem 'EPA CompTox Dashboard' DTXSID00400480
WO7 UniChem ChemicalBook CB4127628
WO7 UniChem PubChem 4186202
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WO7 C10 0.419 1.150 -0.492 ETKDGv3 1
WO7 C01 3.176 0.026 -0.537 ETKDGv3 2
WO7 C02 2.051 -0.648 0.190 ETKDGv3 3
WO7 C05 -0.178 -0.539 1.353 ETKDGv3 4
WO7 C06 -1.248 -1.402 0.678 ETKDGv3 5
WO7 C07 -2.345 -0.563 0.014 ETKDGv3 6
WO7 C09 -1.085 1.439 -0.577 ETKDGv3 7
WO7 N04 0.765 -0.007 0.356 ETKDGv3 8
WO7 N08 -1.812 0.262 -1.078 ETKDGv3 9
WO7 O03 2.238 -1.814 0.635 ETKDGv3 10
WO7 H1 0.940 2.052 -0.107 ETKDGv3 11
WO7 H2 0.774 0.966 -1.530 ETKDGv3 12
WO7 H3 3.251 1.088 -0.226 ETKDGv3 13
WO7 H4 4.141 -0.473 -0.303 ETKDGv3 14
WO7 H5 3.003 -0.031 -1.632 ETKDGv3 15
WO7 H6 -0.639 0.288 1.933 ETKDGv3 16
WO7 H7 0.359 -1.159 2.104 ETKDGv3 17
WO7 H8 -1.724 -2.044 1.451 ETKDGv3 18
WO7 H9 -0.778 -2.074 -0.073 ETKDGv3 19
WO7 H10 -3.097 -1.268 -0.406 ETKDGv3 20
WO7 H11 -2.879 0.056 0.771 ETKDGv3 21
WO7 H12 -1.219 2.282 -1.292 ETKDGv3 22
WO7 H13 -1.478 1.805 0.398 ETKDGv3 23
WO7 H14 -2.634 0.609 -1.627 ETKDGv3 24
#