data_WQV
#
_chem_comp.id WQV
_chem_comp.name N-(5-bromo-2-oxo-1,2-dihydropyridin-3-yl)acetamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H7 Br N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-04
_chem_comp.pdbx_modified_date 2021-01-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 231.047
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WQV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5S1W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WQV N1 N1 N 0 1 N N N N N N -2.561 15.208 1.124 -0.210 2.123 0.049 N1 WQV 1
WQV C4 C1 C 0 1 N N N N N N -2.931 14.736 -1.127 1.203 0.237 -0.047 C4 WQV 2
WQV C5 C2 C 0 1 N N N N N N -2.096 15.104 -0.146 1.028 1.567 0.131 C5 WQV 3
WQV C6 C3 C 0 1 N N N N N N -3.863 14.977 1.469 -1.291 1.363 -0.211 C6 WQV 4
WQV O1 O1 O 0 1 N N N N N N -7.009 15.643 -0.906 -3.205 -0.292 1.256 O1 WQV 5
WQV C1 C4 C 0 1 N N N N N N -7.134 15.048 0.165 -3.288 -0.871 0.193 C1 WQV 6
WQV C C5 C 0 1 N N N N N N -8.452 14.936 0.868 -4.538 -1.640 -0.150 C WQV 7
WQV N N2 N 0 1 N N N N N N -6.083 14.456 0.797 -2.263 -0.826 -0.681 N WQV 8
WQV C2 C6 C 0 1 N N N N N N -4.759 14.587 0.376 -1.145 -0.027 -0.408 C2 WQV 9
WQV O O2 O 0 1 N N N N N N -4.252 15.121 2.620 -2.397 1.876 -0.277 O WQV 10
WQV BR BR1 BR 0 0 N N N N N N -2.254 14.597 -2.884 2.937 -0.511 0.065 BR WQV 11
WQV C3 C7 C 0 1 N N N N N N -4.283 14.459 -0.886 0.102 -0.584 -0.331 C3 WQV 12
WQV H1 H1 H 0 1 N N N N N N -1.918 15.467 1.845 -0.317 3.078 0.184 H1 WQV 13
WQV H2 H2 H 0 1 N N N N N N -1.060 15.316 -0.365 1.882 2.194 0.341 H2 WQV 14
WQV H3 H3 H 0 1 N N N N N N -9.226 15.452 0.281 -5.249 -1.562 0.672 H3 WQV 15
WQV H4 H4 H 0 1 N N N N N N -8.721 13.875 0.976 -4.982 -1.227 -1.056 H4 WQV 16
WQV H5 H5 H 0 1 N N N N N N -8.377 15.399 1.863 -4.286 -2.688 -0.314 H5 WQV 17
WQV H6 H6 H 0 1 N N N N N N -6.270 13.898 1.605 -2.299 -1.347 -1.498 H6 WQV 18
WQV H7 H7 H 0 1 N N N N N N -4.933 14.149 -1.691 0.236 -1.646 -0.474 H7 WQV 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WQV BR C4 SING N N 1
WQV C4 C3 SING N N 2
WQV C4 C5 DOUB N N 3
WQV O1 C1 DOUB N N 4
WQV C3 C2 DOUB N N 5
WQV C5 N1 SING N N 6
WQV C1 N SING N N 7
WQV C1 C SING N N 8
WQV C2 N SING N N 9
WQV C2 C6 SING N N 10
WQV N1 C6 SING N N 11
WQV C6 O DOUB N N 12
WQV N1 H1 SING N N 13
WQV C5 H2 SING N N 14
WQV C H3 SING N N 15
WQV C H4 SING N N 16
WQV C H5 SING N N 17
WQV N H6 SING N N 18
WQV C3 H7 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WQV SMILES ACDLabs 12.01 N1C(=O)C(NC(=O)C)=CC(=C1)Br
WQV InChI InChI 1.03 InChI=1S/C7H7BrN2O2/c1-4(11)10-6-2-5(8)3-9-7(6)12/h2-3H,1H3,(H,9,12)(H,10,11)
WQV InChIKey InChI 1.03 DZPXAAPHBCJNCQ-UHFFFAOYSA-N
WQV SMILES_CANONICAL CACTVS 3.385 CC(=O)NC1=CC(=CNC1=O)Br
WQV SMILES CACTVS 3.385 CC(=O)NC1=CC(=CNC1=O)Br
WQV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(=O)NC1=CC(=CNC1=O)Br
WQV SMILES "OpenEye OEToolkits" 2.0.7 CC(=O)NC1=CC(=CNC1=O)Br
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WQV "SYSTEMATIC NAME" ACDLabs 12.01 N-(5-bromo-2-oxo-1,2-dihydropyridin-3-yl)acetamide
WQV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-(5-bromanyl-2-oxidanylidene-1~{H}-pyridin-3-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WQV 'Create component' 2020-11-04 RCSB
WQV 'Initial release' 2021-01-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WQV N1 N 5.598 -2.160 1
WQV C4 C 4.299 0.090 2
WQV C5 C 4.299 -1.410 3
WQV C6 C 6.897 -1.410 4
WQV O1 O 6.897 3.090 5
WQV C1 C 8.196 2.340 6
WQV C C 9.495 3.090 7
WQV N N 8.196 0.840 8
WQV C2 C 6.897 0.090 9
WQV O O 8.196 -2.160 10
WQV BR Br 3.000 0.840 11
WQV C3 C 5.598 0.840 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WQV BR C4 SINGLE NONE 1
WQV C4 C3 SINGLE NONE 2
WQV C4 C5 DOUBLE NONE 3
WQV O1 C1 DOUBLE NONE 4
WQV C3 C2 DOUBLE NONE 5
WQV C5 N1 SINGLE NONE 6
WQV C1 N SINGLE NONE 7
WQV C1 C SINGLE NONE 8
WQV C2 N SINGLE NONE 9
WQV C2 C6 SINGLE NONE 10
WQV N1 C6 SINGLE NONE 11
WQV C6 O DOUBLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WQV MurckoScaffold S1 scaffold 'O=c1cccc[nH]1' InChI=1S/C5H5NO/c7-5-3-1-2-4-6-5/h1-4H,(H,6,7) UBQKCCHYAOITMY-UHFFFAOYSA-N
WQV amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
WQV pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WQV N1 S1 1
WQV C4 S1 1
WQV C5 S1 1
WQV C6 S1 1
WQV C2 S1 1
WQV O S1 1
WQV C3 S1 1
WQV N F1 1
WQV C1 F1 1
WQV O1 F1 1
WQV C F1 1
WQV C5 F2 1
WQV C4 F2 1
WQV C3 F2 1
WQV C2 F2 1
WQV C6 F2 1
WQV N1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WQV
_pdbe_chem_comp_rdkit_properties.exactmw 229.969
_pdbe_chem_comp_rdkit_properties.amw 231.049
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 87.072
_pdbe_chem_comp_rdkit_properties.tpsa 61.960
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.615
_pdbe_chem_comp_rdkit_properties.CrippenMR 48.350
_pdbe_chem_comp_rdkit_properties.chi0v 7.175
_pdbe_chem_comp_rdkit_properties.chi1v 3.535
_pdbe_chem_comp_rdkit_properties.chi2v 1.275
_pdbe_chem_comp_rdkit_properties.chi3v 1.275
_pdbe_chem_comp_rdkit_properties.chi4v 0.792
_pdbe_chem_comp_rdkit_properties.chi0n 12.589
_pdbe_chem_comp_rdkit_properties.chi1n 6.136
_pdbe_chem_comp_rdkit_properties.chi2n 0.900
_pdbe_chem_comp_rdkit_properties.chi3n 0.900
_pdbe_chem_comp_rdkit_properties.chi4n 0.515
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.100
_pdbe_chem_comp_rdkit_properties.kappa1 3.334
_pdbe_chem_comp_rdkit_properties.kappa2 3.532
_pdbe_chem_comp_rdkit_properties.kappa3 2.197
_pdbe_chem_comp_rdkit_properties.Phi 0.981
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
WQV UniChem PDBe WQV
WQV UniChem ZINC ZINC000067936997
WQV UniChem PubChem 22123056
WQV UniChem Mcule MCULE-2975387620
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WQV N1 -2.240 0.771 1.185 ETKDGv3 1
WQV C4 -2.622 -0.630 -0.731 ETKDGv3 2
WQV C5 -3.114 0.032 0.323 ETKDGv3 3
WQV C6 -0.835 0.814 0.913 ETKDGv3 4
WQV O1 1.840 -0.476 1.623 ETKDGv3 5
WQV C1 2.128 -0.139 0.443 ETKDGv3 6
WQV C 3.563 0.005 0.051 ETKDGv3 7
WQV N 1.098 0.016 -0.544 ETKDGv3 8
WQV C2 -0.304 0.033 -0.228 ETKDGv3 9
WQV O -0.081 1.541 1.613 ETKDGv3 10
WQV BR -3.799 -1.603 -1.879 ETKDGv3 11
WQV C3 -1.170 -0.623 -1.016 ETKDGv3 12
WQV H1 -2.636 1.299 1.994 ETKDGv3 13
WQV H2 -4.177 0.018 0.527 ETKDGv3 14
WQV H3 3.674 0.838 -0.675 ETKDGv3 15
WQV H4 4.186 0.226 0.943 ETKDGv3 16
WQV H5 3.915 -0.937 -0.417 ETKDGv3 17
WQV H6 1.380 -0.006 -1.551 ETKDGv3 18
WQV H7 -0.805 -1.178 -1.871 ETKDGv3 19
#