data_WRV
#
_chem_comp.id WRV
_chem_comp.name "N-(3-fluoro-4-methylphenyl)-N'-[(2S)-1-hydroxypropan-2-yl]urea"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H15 F N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-04
_chem_comp.pdbx_modified_date 2021-01-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 226.247
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WRV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5S28
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WRV N1 N1 N 0 1 N N N N N N -7.922 14.628 4.315 -2.528 0.299 -0.266 N1 WRV 1
WRV C4 C1 C 0 1 N N N N N N -7.657 15.017 3.052 -1.255 -0.134 -0.179 C4 WRV 2
WRV C5 C2 C 0 1 Y N N N N N -5.726 14.790 1.428 1.084 0.264 -0.364 C5 WRV 3
WRV C6 C3 C 0 1 Y N N N N N -6.374 15.034 0.222 2.061 1.191 -0.030 C6 WRV 4
WRV C7 C4 C 0 1 Y N N N N N -5.617 15.116 -0.922 3.371 0.781 0.142 C7 WRV 5
WRV C8 C5 C 0 1 Y N N N N N -4.253 14.915 -0.937 3.707 -0.553 -0.019 C8 WRV 6
WRV C10 C6 C 0 1 Y N N N N N -3.622 14.663 0.274 2.734 -1.478 -0.351 C10 WRV 7
WRV C1 C7 C 0 1 N N N N N N -9.869 13.802 5.511 -3.846 -0.478 1.642 C1 WRV 8
WRV C2 C8 C 0 1 N N S N N N -9.096 15.034 5.081 -3.630 -0.581 0.131 C2 WRV 9
WRV C3 C9 C 0 1 N N N N N N -8.628 15.848 6.260 -4.907 -0.159 -0.597 C3 WRV 10
WRV O1 O1 O 0 1 N N N N N N -9.699 16.425 6.985 -5.293 1.147 -0.165 O1 WRV 11
WRV N2 N2 N 0 1 N N N N N N -6.375 14.714 2.676 -0.241 0.676 -0.544 N2 WRV 12
WRV F1 F1 F 0 1 N N N N N N -6.260 15.397 -2.080 4.324 1.682 0.467 F1 WRV 13
WRV C9 C10 C 0 1 N N N N N N -3.449 14.993 -2.199 5.134 -0.998 0.169 C9 WRV 14
WRV C11 C11 C 0 1 Y N N N N N -4.351 14.593 1.445 1.424 -1.074 -0.524 C11 WRV 15
WRV O2 O2 O 0 1 N N N N N N -8.492 15.572 2.327 -1.020 -1.255 0.229 O2 WRV 16
WRV H1 H1 H 0 1 N N N N N N -7.267 14.017 4.759 -2.715 1.195 -0.588 H1 WRV 17
WRV H2 H2 H 0 1 N N N N N N -7.446 15.156 0.185 1.800 2.231 0.095 H2 WRV 18
WRV H3 H3 H 0 1 N N N N N N -2.552 14.520 0.300 2.998 -2.517 -0.477 H3 WRV 19
WRV H4 H4 H 0 1 N N N N N N -10.754 14.107 6.088 -2.936 -0.778 2.161 H4 WRV 20
WRV H5 H5 H 0 1 N N N N N N -10.188 13.240 4.621 -4.091 0.552 1.904 H5 WRV 21
WRV H6 H6 H 0 1 N N N N N N -9.225 13.165 6.136 -4.666 -1.133 1.937 H6 WRV 22
WRV H7 H7 H 0 1 N N N N N N -9.747 15.659 4.452 -3.385 -1.610 -0.131 H7 WRV 23
WRV H8 H8 H 0 1 N N N N N N -8.058 15.193 6.936 -4.726 -0.148 -1.672 H8 WRV 24
WRV H9 H9 H 0 1 N N N N N N -7.976 16.655 5.894 -5.705 -0.867 -0.371 H9 WRV 25
WRV H10 H10 H 0 1 N N N N N N -9.354 16.926 7.715 -6.097 1.480 -0.587 H10 WRV 26
WRV H11 H11 H 0 1 N N N N N N -5.797 14.379 3.420 -0.430 1.544 -0.932 H11 WRV 27
WRV H12 H12 H 0 1 N N N N N N -3.113 16.028 -2.357 5.295 -1.272 1.212 H12 WRV 28
WRV H13 H13 H 0 1 N N N N N N -2.574 14.332 -2.118 5.333 -1.860 -0.468 H13 WRV 29
WRV H14 H14 H 0 1 N N N N N N -4.070 14.676 -3.050 5.807 -0.184 -0.101 H14 WRV 30
WRV H15 H15 H 0 1 N N N N N N -3.850 14.384 2.378 0.666 -1.796 -0.787 H15 WRV 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WRV C9 C8 SING N N 1
WRV F1 C7 SING N N 2
WRV C8 C7 DOUB Y N 3
WRV C8 C10 SING Y N 4
WRV C7 C6 SING Y N 5
WRV C6 C5 DOUB Y N 6
WRV C10 C11 DOUB Y N 7
WRV C5 C11 SING Y N 8
WRV C5 N2 SING N N 9
WRV O2 C4 DOUB N N 10
WRV N2 C4 SING N N 11
WRV C4 N1 SING N N 12
WRV N1 C2 SING N N 13
WRV C2 C1 SING N N 14
WRV C2 C3 SING N N 15
WRV C3 O1 SING N N 16
WRV N1 H1 SING N N 17
WRV C6 H2 SING N N 18
WRV C10 H3 SING N N 19
WRV C1 H4 SING N N 20
WRV C1 H5 SING N N 21
WRV C1 H6 SING N N 22
WRV C2 H7 SING N N 23
WRV C3 H8 SING N N 24
WRV C3 H9 SING N N 25
WRV O1 H10 SING N N 26
WRV N2 H11 SING N N 27
WRV C9 H12 SING N N 28
WRV C9 H13 SING N N 29
WRV C9 H14 SING N N 30
WRV C11 H15 SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WRV SMILES ACDLabs 12.01 N(C(C)CO)C(Nc1ccc(c(c1)F)C)=O
WRV InChI InChI 1.03 InChI=1S/C11H15FN2O2/c1-7-3-4-9(5-10(7)12)14-11(16)13-8(2)6-15/h3-5,8,15H,6H2,1-2H3,(H2,13,14,16)/t8-/m0/s1
WRV InChIKey InChI 1.03 ONARABRJRRBWJE-QMMMGPOBSA-N
WRV SMILES_CANONICAL CACTVS 3.385 C[C@@H](CO)NC(=O)Nc1ccc(C)c(F)c1
WRV SMILES CACTVS 3.385 C[CH](CO)NC(=O)Nc1ccc(C)c(F)c1
WRV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1F)NC(=O)N[C@@H](C)CO
WRV SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1F)NC(=O)NC(C)CO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WRV "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-fluoro-4-methylphenyl)-N'-[(2S)-1-hydroxypropan-2-yl]urea"
WRV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-(3-fluoranyl-4-methyl-phenyl)-3-[(2~{S})-1-oxidanylpropan-2-yl]urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WRV 'Create component' 2020-11-04 RCSB
WRV 'Initial release' 2021-01-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WRV N1 N 6.897 2.160 1
WRV C4 C 6.897 0.660 2
WRV C5 C 5.598 -1.590 3
WRV C6 C 4.299 -2.340 4
WRV C7 C 4.299 -3.840 5
WRV C8 C 5.598 -4.590 6
WRV C10 C 6.897 -3.840 7
WRV C1 C 9.495 2.160 8
WRV C2 C 8.196 2.910 9
WRV C3 C 8.196 4.410 10
WRV O1 O 9.495 5.160 11
WRV N2 N 5.598 -0.090 12
WRV F1 F 3.000 -4.590 13
WRV C9 C 5.598 -6.090 14
WRV C11 C 6.897 -2.340 15
WRV O2 O 8.196 -0.090 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WRV C9 C8 SINGLE NONE 1
WRV F1 C7 SINGLE NONE 2
WRV C8 C7 DOUBLE NONE 3
WRV C8 C10 SINGLE NONE 4
WRV C7 C6 SINGLE NONE 5
WRV C6 C5 DOUBLE NONE 6
WRV C10 C11 DOUBLE NONE 7
WRV C5 C11 SINGLE NONE 8
WRV C5 N2 SINGLE NONE 9
WRV O2 C4 DOUBLE NONE 10
WRV N2 C4 SINGLE NONE 11
WRV C4 N1 SINGLE NONE 12
WRV N1 C2 SINGLE NONE 13
WRV C2 C1 SINGLE BEGINDASH 14
WRV C2 C3 SINGLE NONE 15
WRV C3 O1 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WRV MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
WRV phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WRV C5 S1 1
WRV C6 S1 1
WRV C7 S1 1
WRV C8 S1 1
WRV C10 S1 1
WRV C11 S1 1
WRV C5 F1 1
WRV C6 F1 1
WRV C7 F1 1
WRV C8 F1 1
WRV C10 F1 1
WRV C11 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WRV
_pdbe_chem_comp_rdkit_properties.exactmw 226.112
_pdbe_chem_comp_rdkit_properties.amw 226.251
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.364
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 114.754
_pdbe_chem_comp_rdkit_properties.tpsa 61.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.201
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.749
_pdbe_chem_comp_rdkit_properties.chi0v 7.589
_pdbe_chem_comp_rdkit_properties.chi1v 3.742
_pdbe_chem_comp_rdkit_properties.chi2v 1.265
_pdbe_chem_comp_rdkit_properties.chi3v 1.265
_pdbe_chem_comp_rdkit_properties.chi4v 0.669
_pdbe_chem_comp_rdkit_properties.chi0n 22.589
_pdbe_chem_comp_rdkit_properties.chi1n 11.044
_pdbe_chem_comp_rdkit_properties.chi2n 1.265
_pdbe_chem_comp_rdkit_properties.chi3n 1.265
_pdbe_chem_comp_rdkit_properties.chi4n 0.669
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.620
_pdbe_chem_comp_rdkit_properties.kappa1 2.982
_pdbe_chem_comp_rdkit_properties.kappa2 5.460
_pdbe_chem_comp_rdkit_properties.kappa3 3.507
_pdbe_chem_comp_rdkit_properties.Phi 1.018
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
WRV UniChem PDBe WRV
WRV UniChem ZINC ZINC000040526072
WRV UniChem Mcule MCULE-3678994086
WRV UniChem PubChem 93616379
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WRV N1 -2.072 -0.840 0.760 ETKDGv3 1
WRV C4 -0.888 -0.288 0.169 ETKDGv3 2
WRV C5 1.607 0.114 0.389 ETKDGv3 3
WRV C6 2.511 0.759 1.146 ETKDGv3 4
WRV C7 3.846 1.091 0.606 ETKDGv3 5
WRV C8 4.175 0.738 -0.650 ETKDGv3 6
WRV C10 3.196 -0.011 -1.474 ETKDGv3 7
WRV C1 -4.257 -1.964 0.688 ETKDGv3 8
WRV C2 -3.352 -0.905 0.046 ETKDGv3 9
WRV C3 -4.024 0.478 0.055 ETKDGv3 10
WRV O1 -5.171 0.477 -0.754 ETKDGv3 11
WRV N2 0.319 -0.210 0.942 ETKDGv3 12
WRV F1 4.730 1.754 1.394 ETKDGv3 13
WRV C9 5.534 1.055 -1.203 ETKDGv3 14
WRV C11 1.987 -0.309 -0.984 ETKDGv3 15
WRV O2 -0.919 0.156 -1.011 ETKDGv3 16
WRV H1 -2.004 -1.229 1.729 ETKDGv3 17
WRV H2 2.265 1.056 2.158 ETKDGv3 18
WRV H3 3.461 -0.335 -2.473 ETKDGv3 19
WRV H4 -5.189 -2.089 0.098 ETKDGv3 20
WRV H5 -3.732 -2.943 0.711 ETKDGv3 21
WRV H6 -4.521 -1.676 1.728 ETKDGv3 22
WRV H7 -3.167 -1.214 -1.007 ETKDGv3 23
WRV H8 -4.266 0.787 1.099 ETKDGv3 24
WRV H9 -3.319 1.232 -0.354 ETKDGv3 25
WRV H10 -5.939 0.256 -0.166 ETKDGv3 26
WRV H11 0.238 -0.324 1.978 ETKDGv3 27
WRV H12 5.760 2.134 -1.067 ETKDGv3 28
WRV H13 6.302 0.451 -0.674 ETKDGv3 29
WRV H14 5.587 0.824 -2.288 ETKDGv3 30
WRV H15 1.302 -0.888 -1.590 ETKDGv3 31
#