data_X0U
#
_chem_comp.id X0U
_chem_comp.name 6,7-DIHYDRO[1,4]DIOXINO[2,3-F][1,3]BENZOTHIAZOL-2-AMINE
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H8 N2 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-12-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 208.237
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X0U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2X0U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X0U N1 N1 N 0 1 Y N N N N N 124.556 103.807 -43.296 2.145 -1.240 -0.038 N1 X0U 1
X0U N2 N2 N 0 1 N N N N N N 125.237 104.436 -41.142 4.464 -0.770 -0.023 N2 X0U 2
X0U C1 C1 C 0 1 Y N N N N N 124.378 101.503 -46.240 -1.529 -0.733 -0.024 C1 X0U 3
X0U C2 C2 C 0 1 Y N N N N N 125.240 100.477 -45.765 -1.533 0.660 0.021 C2 X0U 4
X0U C3 C3 C 0 1 N N N N N N 124.779 99.190 -47.726 -3.883 0.643 -0.349 C3 X0U 5
X0U C4 C4 C 0 1 N N N N N N 124.425 100.527 -48.392 -3.879 -0.723 0.350 C4 X0U 6
X0U C5 C5 C 0 1 Y N N N N N 124.129 102.666 -45.467 -0.337 -1.423 -0.046 C5 X0U 7
X0U C6 C6 C 0 1 Y N N N N N 124.723 102.765 -44.179 0.894 -0.733 -0.023 C6 X0U 8
X0U C7 C7 C 0 1 Y N N N N N 125.556 101.711 -43.721 0.874 0.663 0.020 C7 X0U 9
X0U C8 C8 C 0 1 Y N N N N N 125.853 100.567 -44.495 -0.337 1.351 0.041 C8 X0U 10
X0U C9 C9 C 0 1 Y N N N N N 125.243 103.585 -42.194 3.131 -0.410 -0.012 C9 X0U 11
X0U O1 O1 O 0 1 N N N N N N 123.754 101.433 -47.465 -2.701 -1.429 -0.053 O1 X0U 12
X0U O2 O2 O 0 1 N N N N N N 125.536 99.342 -46.488 -2.705 1.354 0.049 O2 X0U 13
X0U S S S 0 1 Y N N N N N 126.122 102.091 -42.161 2.537 1.244 0.038 S X0U 14
X0U H21N H21N H 0 0 N N N N N N 125.236 103.913 -40.290 4.713 -1.707 -0.051 H21N X0U 15
X0U H22N H22N H 0 0 N N N N N N 126.052 105.014 -41.177 5.151 -0.086 -0.001 H22N X0U 16
X0U H5 H5 H 0 1 N N N N N N 123.502 103.459 -45.848 -0.344 -2.502 -0.078 H5 X0U 17
X0U H8 H8 H 0 1 N N N N N N 126.518 99.797 -44.133 -0.341 2.430 0.074 H8 X0U 18
X0U H31C H31C H 0 0 N N N N N N 123.842 98.664 -47.493 -3.880 0.503 -1.430 H31C X0U 19
X0U H32C H32C H 0 0 N N N N N N 125.413 98.632 -48.430 -4.769 1.205 -0.053 H32C X0U 20
X0U H41C H41C H 0 0 N N N N N N 125.353 101.004 -48.742 -3.872 -0.583 1.431 H41C X0U 21
X0U H42C H42C H 0 0 N N N N N N 123.741 100.323 -49.229 -4.764 -1.288 0.058 H42C X0U 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X0U N1 C6 SING Y N 1
X0U N1 C9 DOUB Y N 2
X0U N2 C9 SING N N 3
X0U C1 C2 SING Y N 4
X0U C1 C5 DOUB Y N 5
X0U C1 O1 SING N N 6
X0U C2 C8 DOUB Y N 7
X0U C2 O2 SING N N 8
X0U C3 C4 SING N N 9
X0U C3 O2 SING N N 10
X0U C4 O1 SING N N 11
X0U C5 C6 SING Y N 12
X0U C6 C7 DOUB Y N 13
X0U C7 C8 SING Y N 14
X0U C7 S SING Y N 15
X0U C9 S SING Y N 16
X0U N2 H21N SING N N 17
X0U N2 H22N SING N N 18
X0U C5 H5 SING N N 19
X0U C8 H8 SING N N 20
X0U C3 H31C SING N N 21
X0U C3 H32C SING N N 22
X0U C4 H41C SING N N 23
X0U C4 H42C SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X0U SMILES ACDLabs 10.04 O2c3cc1sc(nc1cc3OCC2)N
X0U SMILES_CANONICAL CACTVS 3.352 Nc1sc2cc3OCCOc3cc2n1
X0U SMILES CACTVS 3.352 Nc1sc2cc3OCCOc3cc2n1
X0U SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 c1c2c(cc3c1OCCO3)sc(n2)N
X0U SMILES "OpenEye OEToolkits" 1.6.1 c1c2c(cc3c1OCCO3)sc(n2)N
X0U InChI InChI 1.03 InChI=1S/C9H8N2O2S/c10-9-11-5-3-6-7(4-8(5)14-9)13-2-1-12-6/h3-4H,1-2H2,(H2,10,11)
X0U InChIKey InChI 1.03 IURPFIBKOPUBIT-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X0U "SYSTEMATIC NAME" ACDLabs 10.04 6,7-dihydro[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine
X0U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 6,7-dihydro-[1,4]dioxino[2,3-f][1,3]benzothiazol-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X0U 'Create component' 2009-12-17 EBI
X0U 'Modify aromatic_flag' 2011-06-04 RCSB
X0U 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
X0U N1 N 9.717 -1.207 1
X0U N2 N 12.093 0.000 2
X0U C1 C 5.700 -0.750 3
X0U C2 C 5.700 0.750 4
X0U C3 C 3.000 0.781 5
X0U C4 C 3.000 -0.781 6
X0U C5 C 6.999 -1.500 7
X0U C6 C 8.298 -0.750 8
X0U C7 C 8.298 0.750 9
X0U C8 C 6.999 1.500 10
X0U C9 C 10.593 0.000 11
X0U O1 O 4.359 -1.552 12
X0U O2 O 4.359 1.552 13
X0U S S 9.717 1.207 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
X0U N1 C6 SINGLE NONE 1
X0U N1 C9 DOUBLE NONE 2
X0U N2 C9 SINGLE NONE 3
X0U C1 C2 DOUBLE NONE 4
X0U C1 C5 SINGLE NONE 5
X0U C1 O1 SINGLE NONE 6
X0U C2 C8 SINGLE NONE 7
X0U C2 O2 SINGLE NONE 8
X0U C3 C4 SINGLE NONE 9
X0U C3 O2 SINGLE NONE 10
X0U C4 O1 SINGLE NONE 11
X0U C5 C6 DOUBLE NONE 12
X0U C6 C7 SINGLE NONE 13
X0U C7 C8 DOUBLE NONE 14
X0U C7 S SINGLE NONE 15
X0U C9 S SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
X0U MurckoScaffold S1 scaffold c1nc2cc3c(cc2s1)OCCO3 InChI=1S/C9H7NO2S/c1-2-12-8-4-9-6(10-5-13-9)3-7(8)11-1/h3-5H,1-2H2 LHKKSRONPVLRRK-UHFFFAOYSA-N
X0U benzothiazole F1 fragment c1ccc2scnc2c1 InChI=1S/C7H5NS/c1-2-4-7-6(3-1)8-5-9-7/h1-5H IOJUPLGTWVMSFF-UHFFFAOYSA-N
X0U phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
X0U thiazole F3 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
X0U Z1954800564 F4 fragment COc1ccc2sc(N)nc2c1 InChI=1S/C8H8N2OS/c1-11-5-2-3-7-6(4-5)10-8(9)12-7/h2-4H,1H3,(H2,9,10) OMIHQJBWAPWLBO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
X0U N1 S1 1
X0U C1 S1 1
X0U C2 S1 1
X0U C3 S1 1
X0U C4 S1 1
X0U C5 S1 1
X0U C6 S1 1
X0U C7 S1 1
X0U C8 S1 1
X0U C9 S1 1
X0U O1 S1 1
X0U O2 S1 1
X0U S S1 1
X0U C7 F1 1
X0U S F1 1
X0U C9 F1 1
X0U N1 F1 1
X0U C6 F1 1
X0U C5 F1 1
X0U C1 F1 1
X0U C2 F1 1
X0U C8 F1 1
X0U C1 F2 1
X0U C2 F2 1
X0U C8 F2 1
X0U C7 F2 1
X0U C6 F2 1
X0U C5 F2 1
X0U C7 F3 1
X0U C6 F3 1
X0U N1 F3 1
X0U C9 F3 1
X0U S F3 1
X0U C4 F4 1
X0U O1 F4 1
X0U C1 F4 1
X0U C2 F4 1
X0U C8 F4 1
X0U C7 F4 1
X0U S F4 1
X0U C9 F4 1
X0U N2 F4 1
X0U N1 F4 1
X0U C6 F4 1
X0U C5 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id X0U
_pdbe_chem_comp_rdkit_properties.exactmw 208.031
_pdbe_chem_comp_rdkit_properties.amw 208.242
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 95.620
_pdbe_chem_comp_rdkit_properties.tpsa 57.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.084
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.772
_pdbe_chem_comp_rdkit_properties.chi0v 7.436
_pdbe_chem_comp_rdkit_properties.chi1v 4.462
_pdbe_chem_comp_rdkit_properties.chi2v 2.402
_pdbe_chem_comp_rdkit_properties.chi3v 2.402
_pdbe_chem_comp_rdkit_properties.chi4v 1.747
_pdbe_chem_comp_rdkit_properties.chi0n 14.619
_pdbe_chem_comp_rdkit_properties.chi1n 7.540
_pdbe_chem_comp_rdkit_properties.chi2n 1.629
_pdbe_chem_comp_rdkit_properties.chi3n 1.629
_pdbe_chem_comp_rdkit_properties.chi4n 1.090
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.490
_pdbe_chem_comp_rdkit_properties.kappa1 3.271
_pdbe_chem_comp_rdkit_properties.kappa2 2.748
_pdbe_chem_comp_rdkit_properties.kappa3 1.092
_pdbe_chem_comp_rdkit_properties.Phi 0.642
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
X0U UniChem ChEMBL CHEMBL1236743
X0U UniChem PDBe X0U
X0U UniChem ZINC ZINC000000254825
X0U UniChem 'Probes And Drugs' PD145340
X0U UniChem eMolecules 1201268
X0U UniChem SureChEMBL SCHEMBL20374893
X0U UniChem PubChem 771615
X0U UniChem Mcule MCULE-8911270318
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
X0U N1 2.822 -0.478 0.612 ETKDGv3 1
X0U N2 4.903 -1.271 -0.245 ETKDGv3 2
X0U C1 -0.861 0.412 0.555 ETKDGv3 3
X0U C2 -1.152 0.104 -0.732 ETKDGv3 4
X0U C3 -3.400 1.089 -0.481 ETKDGv3 5
X0U C4 -3.250 0.817 1.019 ETKDGv3 6
X0U C5 0.521 0.241 1.075 ETKDGv3 7
X0U C6 1.454 -0.250 0.252 ETKDGv3 8
X0U C7 1.121 -0.604 -1.122 ETKDGv3 9
X0U C8 -0.104 -0.451 -1.625 ETKDGv3 10
X0U C9 3.517 -0.966 -0.374 ETKDGv3 11
X0U O1 -1.873 0.895 1.393 ETKDGv3 12
X0U O2 -2.450 0.313 -1.215 ETKDGv3 13
X0U S 2.591 -1.218 -1.898 ETKDGv3 14
X0U H21N 5.399 -1.108 0.659 ETKDGv3 15
X0U H22N 5.431 -1.661 -1.056 ETKDGv3 16
X0U H5 0.763 0.500 2.097 ETKDGv3 17
X0U H8 -0.325 -0.716 -2.650 ETKDGv3 18
X0U H31C -4.427 0.836 -0.818 ETKDGv3 19
X0U H32C -3.214 2.167 -0.677 ETKDGv3 20
X0U H41C -3.839 1.553 1.605 ETKDGv3 21
X0U H42C -3.628 -0.203 1.245 ETKDGv3 22
#