data_X29
#
_chem_comp.id X29
_chem_comp.name 4-(6-bromo[1,2,4]triazolo[4,3-a]pyridin-3-yl)-6-chlorobenzene-1,3-diol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H7 Br Cl N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-24
_chem_comp.pdbx_modified_date 2014-06-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 340.560
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X29
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4L91
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X29 C01 C01 C 0 1 Y N N N N N -28.985 14.496 25.151 2.745 -0.051 0.023 C01 X29 1
X29 C02 C02 C 0 1 Y N N N N N -27.721 14.105 24.658 3.565 1.042 -0.309 C02 X29 2
X29 C03 C03 C 0 1 Y N N N N N -27.672 12.934 23.896 3.000 2.243 -0.608 C03 X29 3
X29 C04 C04 C 0 1 Y N N N N N -30.149 13.771 24.917 1.402 0.085 0.041 C04 X29 4
X29 N05 N05 N 0 1 Y N N N N N -30.047 12.641 24.172 0.823 1.283 -0.257 N05 X29 5
X29 C06 C06 C 0 1 Y N N N N N -28.862 12.213 23.669 1.599 2.371 -0.579 C06 X29 6
X29 N07 N07 N 0 1 Y N N N N N -29.089 11.060 22.965 0.773 3.379 -0.814 N07 X29 7
X29 N08 N08 N 0 1 Y N N N N N -30.387 10.780 23.045 -0.443 2.991 -0.654 N08 X29 8
X29 C09 C09 C 0 1 Y N N N N N -31.021 11.722 23.745 -0.474 1.716 -0.321 C09 X29 9
X29 BR1 BR1 BR 0 0 N N N N N N -29.156 16.109 26.183 3.528 -1.722 0.438 BR1 X29 10
X29 C11 C11 C 0 1 Y N N N N N -32.449 11.665 24.148 -1.681 0.909 -0.053 C11 X29 11
X29 C12 C12 C 0 1 Y N N N N N -33.496 11.966 23.296 -2.694 1.412 0.774 C12 X29 12
X29 C13 C13 C 0 1 Y N N N N N -34.803 11.779 23.735 -3.823 0.651 1.020 C13 X29 13
X29 C14 C14 C 0 1 Y N N N N N -35.026 11.257 25.004 -3.950 -0.607 0.450 C14 X29 14
X29 C15 C15 C 0 1 Y N N N N N -33.973 10.895 25.829 -2.947 -1.109 -0.371 C15 X29 15
X29 C16 C16 C 0 1 Y N N N N N -32.679 11.081 25.383 -1.820 -0.355 -0.628 C16 X29 16
X29 O17 O17 O 0 1 N N N N N N -36.318 11.041 25.411 -5.060 -1.352 0.695 O17 X29 17
X29 O18 O18 O 0 1 N N N N N N -33.296 12.518 22.048 -2.568 2.644 1.332 O18 X29 18
X29 CL1 CL1 CL 0 0 N N N N N N -34.265 10.267 27.420 -3.115 -2.684 -1.080 CL1 X29 19
X29 H1 H1 H 0 1 N N N N N N -26.832 14.684 24.860 4.639 0.929 -0.327 H1 X29 20
X29 H2 H2 H 0 1 N N N N N N -26.735 12.586 23.487 3.620 3.090 -0.864 H2 X29 21
X29 H3 H3 H 0 1 N N N N N N -31.100 14.096 25.314 0.781 -0.762 0.293 H3 X29 22
X29 H4 H4 H 0 1 N N N N N N -35.635 12.037 23.097 -4.605 1.036 1.658 H4 X29 23
X29 H5 H5 H 0 1 N N N N N N -31.846 10.771 25.997 -1.044 -0.745 -1.270 H5 X29 24
X29 H6 H6 H 0 1 N N N N N N -36.318 10.685 26.292 -5.778 -1.209 0.062 H6 X29 25
X29 H7 H7 H 0 1 N N N N N N -32.364 12.588 21.878 -2.135 2.641 2.197 H7 X29 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X29 O18 C12 SING N N 1
X29 N07 N08 SING Y N 2
X29 N07 C06 DOUB Y N 3
X29 N08 C09 DOUB Y N 4
X29 C12 C13 DOUB Y N 5
X29 C12 C11 SING Y N 6
X29 C06 C03 SING Y N 7
X29 C06 N05 SING Y N 8
X29 C13 C14 SING Y N 9
X29 C09 C11 SING N N 10
X29 C09 N05 SING Y N 11
X29 C03 C02 DOUB Y N 12
X29 C11 C16 DOUB Y N 13
X29 N05 C04 SING Y N 14
X29 C02 C01 SING Y N 15
X29 C04 C01 DOUB Y N 16
X29 C14 O17 SING N N 17
X29 C14 C15 DOUB Y N 18
X29 C01 BR1 SING N N 19
X29 C16 C15 SING Y N 20
X29 C15 CL1 SING N N 21
X29 C02 H1 SING N N 22
X29 C03 H2 SING N N 23
X29 C04 H3 SING N N 24
X29 C13 H4 SING N N 25
X29 C16 H5 SING N N 26
X29 O17 H6 SING N N 27
X29 O18 H7 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X29 SMILES ACDLabs 12.01 Clc3cc(c1nnc2ccc(Br)cn12)c(O)cc3O
X29 InChI InChI 1.03 InChI=1S/C12H7BrClN3O2/c13-6-1-2-11-15-16-12(17(11)5-6)7-3-8(14)10(19)4-9(7)18/h1-5,18-19H
X29 InChIKey InChI 1.03 NLZHDDXNSHMPRC-UHFFFAOYSA-N
X29 SMILES_CANONICAL CACTVS 3.385 Oc1cc(O)c(cc1Cl)c2nnc3ccc(Br)cn23
X29 SMILES CACTVS 3.385 Oc1cc(O)c(cc1Cl)c2nnc3ccc(Br)cn23
X29 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc2nnc(n2cc1Br)c3cc(c(cc3O)O)Cl
X29 SMILES "OpenEye OEToolkits" 1.7.6 c1cc2nnc(n2cc1Br)c3cc(c(cc3O)O)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X29 "SYSTEMATIC NAME" ACDLabs 12.01 4-(6-bromo[1,2,4]triazolo[4,3-a]pyridin-3-yl)-6-chlorobenzene-1,3-diol
X29 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-(6-bromanyl-[1,2,4]triazolo[4,3-a]pyridin-3-yl)-6-chloranyl-benzene-1,3-diol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X29 'Create component' 2013-06-24 PDBJ
X29 'Initial release' 2014-06-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
X29 C01 C 4.299 -2.301 1
X29 C02 C 4.299 -3.801 2
X29 C03 C 5.598 -4.551 3
X29 C04 C 5.598 -1.551 4
X29 N05 N 6.897 -2.301 5
X29 C06 C 6.897 -3.801 6
X29 N07 N 8.316 -4.258 7
X29 N08 N 9.192 -3.051 8
X29 C09 C 8.316 -1.844 9
X29 BR1 Br 3.000 -1.551 10
X29 C11 C 8.783 -0.418 11
X29 C12 C 7.781 0.698 12
X29 C13 C 8.247 2.124 13
X29 C14 C 9.714 2.433 14
X29 C15 C 10.716 1.317 15
X29 C16 C 10.250 -0.109 16
X29 O17 O 10.181 3.859 17
X29 O18 O 6.313 0.389 18
X29 CL1 Cl 12.184 1.626 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
X29 O18 C12 SINGLE NONE 1
X29 N07 N08 SINGLE NONE 2
X29 N07 C06 DOUBLE NONE 3
X29 N08 C09 DOUBLE NONE 4
X29 C12 C13 DOUBLE NONE 5
X29 C12 C11 SINGLE NONE 6
X29 C06 C03 SINGLE NONE 7
X29 C06 N05 SINGLE NONE 8
X29 C13 C14 SINGLE NONE 9
X29 C09 C11 SINGLE NONE 10
X29 C09 N05 SINGLE NONE 11
X29 C03 C02 DOUBLE NONE 12
X29 C11 C16 DOUBLE NONE 13
X29 N05 C04 SINGLE NONE 14
X29 C02 C01 SINGLE NONE 15
X29 C04 C01 DOUBLE NONE 16
X29 C14 O17 SINGLE NONE 17
X29 C14 C15 DOUBLE NONE 18
X29 C01 BR1 SINGLE NONE 19
X29 C16 C15 SINGLE NONE 20
X29 C15 CL1 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
X29 MurckoScaffold S1 scaffold c1ccc(-c2nnc3ccccn23)cc1 InChI=1S/C12H9N3/c1-2-6-10(7-3-1)12-14-13-11-8-4-5-9-15(11)12/h1-9H BKMNRMWBERCAFW-UHFFFAOYSA-N
X29 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
X29 pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
X29 C01 S1 1
X29 C02 S1 1
X29 C03 S1 1
X29 C04 S1 1
X29 N05 S1 1
X29 C06 S1 1
X29 N07 S1 1
X29 N08 S1 1
X29 C09 S1 1
X29 C11 S1 1
X29 C12 S1 1
X29 C13 S1 1
X29 C14 S1 1
X29 C15 S1 1
X29 C16 S1 1
X29 C11 F1 1
X29 C12 F1 1
X29 C13 F1 1
X29 C14 F1 1
X29 C15 F1 1
X29 C16 F1 1
X29 C04 F2 1
X29 C01 F2 1
X29 C02 F2 1
X29 C03 F2 1
X29 C06 F2 1
X29 N05 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id X29
_pdbe_chem_comp_rdkit_properties.exactmw 338.941
_pdbe_chem_comp_rdkit_properties.amw 340.564
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.782
_pdbe_chem_comp_rdkit_properties.tpsa 70.650
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.704
_pdbe_chem_comp_rdkit_properties.CrippenMR 70.818
_pdbe_chem_comp_rdkit_properties.chi0v 11.256
_pdbe_chem_comp_rdkit_properties.chi1v 6.025
_pdbe_chem_comp_rdkit_properties.chi2v 2.911
_pdbe_chem_comp_rdkit_properties.chi3v 2.911
_pdbe_chem_comp_rdkit_properties.chi4v 1.889
_pdbe_chem_comp_rdkit_properties.chi0n 15.914
_pdbe_chem_comp_rdkit_properties.chi1n 8.171
_pdbe_chem_comp_rdkit_properties.chi2n 2.269
_pdbe_chem_comp_rdkit_properties.chi3n 2.269
_pdbe_chem_comp_rdkit_properties.chi4n 1.471
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.790
_pdbe_chem_comp_rdkit_properties.kappa1 6.583
_pdbe_chem_comp_rdkit_properties.kappa2 4.395
_pdbe_chem_comp_rdkit_properties.kappa3 2.024
_pdbe_chem_comp_rdkit_properties.Phi 1.523
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
X29 UniChem PDBe X29
X29 UniChem ZINC ZINC000098209600
X29 UniChem PubChem 137350152
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
X29 C01 -3.088 0.641 -1.310 ETKDGv3 1
X29 C02 -4.199 0.182 -0.419 ETKDGv3 2
X29 C03 -3.952 -0.445 0.745 ETKDGv3 3
X29 C04 -1.804 0.498 -0.936 ETKDGv3 4
X29 N05 -1.530 -0.037 0.363 ETKDGv3 5
X29 C06 -2.553 -0.628 1.131 ETKDGv3 6
X29 N07 -2.103 -1.476 1.993 ETKDGv3 7
X29 N08 -0.705 -1.497 1.853 ETKDGv3 8
X29 C09 -0.381 -0.680 0.899 ETKDGv3 9
X29 BR1 -3.503 1.388 -3.018 ETKDGv3 10
X29 C11 1.009 -0.454 0.453 ETKDGv3 11
X29 C12 1.471 0.905 0.056 ETKDGv3 12
X29 C13 2.729 1.082 -0.379 ETKDGv3 13
X29 C14 3.671 -0.058 -0.436 ETKDGv3 14
X29 C15 3.266 -1.276 -0.046 ETKDGv3 15
X29 C16 1.880 -1.479 0.424 ETKDGv3 16
X29 O17 4.974 0.138 -0.889 ETKDGv3 17
X29 O18 0.608 1.996 0.163 ETKDGv3 18
X29 CL1 4.362 -2.649 -0.094 ETKDGv3 19
X29 H1 -5.224 0.319 -0.739 ETKDGv3 20
X29 H2 -4.759 -0.829 1.356 ETKDGv3 21
X29 H3 -0.997 0.781 -1.599 ETKDGv3 22
X29 H4 3.071 2.068 -0.668 ETKDGv3 23
X29 H5 1.568 -2.474 0.718 ETKDGv3 24
X29 H6 5.296 1.051 -1.186 ETKDGv3 25
X29 H7 0.894 2.933 -0.094 ETKDGv3 26
#