data_X2P
#
_chem_comp.id X2P
_chem_comp.name
"(1R,2R,5S)-8'-(3-chloro-4-fluorobenzyl)-6'-hydroxy-2'-[(2S)-2-hydroxypropyl]-9',10'-dihydro-2'H-spiro[bicyclo[3.1.0]hexane-2,3'-imidazo[5,1-a][2,6]naphthyridine]-1',5',7'(8'H)-trione"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H25 Cl F N3 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-05-14
_chem_comp.pdbx_modified_date 2015-10-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 501.935
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X2P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4ZTF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X2P N1 N1 N 0 1 N N N N N N 29.285 -36.761 19.927 -2.316 -1.028 -0.101 N1 X2P 1
X2P C4 C1 C 0 1 N N N N N N 32.141 -36.732 22.501 -0.062 1.652 -1.486 C4 X2P 2
X2P C5 C2 C 0 1 N N N N N N 30.028 -36.771 21.107 -1.849 0.184 -0.560 C5 X2P 3
X2P C6 C3 C 0 1 N N N N N N 29.960 -36.680 18.708 -1.515 -2.110 -0.047 C6 X2P 4
X2P C7 C4 C 0 1 N N N N N N 31.404 -36.656 18.771 -0.105 -1.989 -0.447 C7 X2P 5
X2P C8 C5 C 0 1 N N R N N N 27.810 -36.930 20.129 -3.721 -0.835 0.252 C8 X2P 6
X2P C10 C6 C 0 1 N N N N N N 26.627 -37.211 22.391 -5.379 1.172 0.143 C10 X2P 7
X2P C13 C7 C 0 1 N N N N N N 27.267 -38.256 19.572 -3.956 -1.153 1.742 C13 X2P 8
X2P C15 C8 C 0 1 N N R N N N 26.314 -36.393 18.259 -5.733 -2.240 0.468 C15 X2P 9
X2P C17 C9 C 0 1 N N N N N N 25.510 -35.835 19.385 -6.077 -1.421 -0.778 C17 X2P 10
X2P C20 C10 C 0 1 Y N N N N N 36.627 -38.451 22.718 4.879 2.179 -0.304 C20 X2P 11
X2P C21 C11 C 0 1 Y N N N N N 37.345 -39.625 22.877 5.802 2.230 0.724 C21 X2P 12
X2P C22 C12 C 0 1 Y N N N N N 37.831 -40.261 21.761 6.412 1.068 1.164 C22 X2P 13
X2P C24 C13 C 0 1 Y N N N N N 36.919 -38.566 20.342 5.172 -0.194 -0.453 C24 X2P 14
X2P F F1 F 0 1 N N N N N N 38.517 -41.423 21.902 7.314 1.117 2.168 F X2P 15
X2P C23 C14 C 0 1 Y N N N N N 37.625 -39.747 20.498 6.095 -0.146 0.574 C23 X2P 16
X2P CL CL1 CL 0 0 N N N N N N 38.212 -40.601 19.112 6.864 -1.603 1.120 CL X2P 17
X2P C19 C15 C 0 1 Y N N N N N 36.404 -37.904 21.457 4.560 0.967 -0.888 C19 X2P 18
X2P C18 C16 C 0 1 N N N N N N 35.665 -36.593 21.308 3.553 0.914 -2.008 C18 X2P 19
X2P N N2 N 0 1 N N N N N N 34.214 -36.741 21.178 2.214 0.707 -1.451 N X2P 20
X2P C1 C17 C 0 1 N N N N N N 33.640 -36.674 19.958 1.756 -0.548 -1.277 C1 X2P 21
X2P O4 O1 O 0 1 N N N N N N 34.293 -36.581 18.925 2.492 -1.500 -1.448 O4 X2P 22
X2P C2 C18 C 0 1 N N N N N N 32.183 -36.703 19.964 0.349 -0.754 -0.874 C2 X2P 23
X2P O O2 O 0 1 N N N N N N 31.986 -36.572 17.566 0.726 -3.056 -0.397 O X2P 24
X2P O1 O3 O 0 1 N N N N N N 29.381 -36.620 17.631 -1.957 -3.181 0.331 O1 X2P 25
X2P C16 C19 C 0 1 N N R N N N 27.004 -35.796 19.444 -4.622 -1.815 -0.512 C16 X2P 26
X2P C14 C20 C 0 1 N N N N N N 26.584 -37.905 18.240 -5.470 -1.482 1.786 C14 X2P 27
X2P N2 N3 N 0 1 N N N N N N 27.841 -36.939 21.608 -4.067 0.549 -0.046 N2 X2P 28
X2P C11 C21 C 0 1 N N S N N N 26.115 -36.008 23.243 -5.269 2.290 1.181 C11 X2P 29
X2P O3 O4 O 0 1 N N N N N N 26.519 -34.769 22.641 -4.427 3.328 0.676 O3 X2P 30
X2P C12 C22 C 0 1 N N N N N N 24.611 -36.053 23.388 -6.660 2.857 1.471 C12 X2P 31
X2P C9 C23 C 0 1 N N N N N N 29.060 -36.751 22.191 -2.962 1.154 -0.526 C9 X2P 32
X2P O2 O5 O 0 1 N N N N N N 29.237 -36.631 23.398 -2.893 2.316 -0.877 O2 X2P 33
X2P C3 C24 C 0 1 N N N N N N 31.409 -36.753 21.188 -0.552 0.331 -0.951 C3 X2P 34
X2P C C25 C 0 1 N N N N N N 33.520 -37.338 22.325 1.398 1.865 -1.095 C X2P 35
X2P H1 H1 H 0 1 N N N N N N 32.239 -35.693 22.849 -0.150 1.657 -2.573 H1 X2P 36
X2P H2 H2 H 0 1 N N N N N N 31.577 -37.315 23.244 -0.667 2.458 -1.071 H2 X2P 37
X2P H3 H3 H 0 1 N N N N N N 25.828 -37.501 21.693 -5.724 1.588 -0.804 H3 X2P 38
X2P H4 H4 H 0 1 N N N N N N 26.840 -38.047 23.073 -6.090 0.422 0.490 H4 X2P 39
X2P H5 H5 H 0 1 N N N N N N 26.540 -38.695 20.271 -3.364 -2.014 2.052 H5 X2P 40
X2P H6 H6 H 0 1 N N N N N N 28.090 -38.966 19.405 -3.727 -0.287 2.363 H6 X2P 41
X2P H7 H7 H 0 1 N N N N N N 26.338 -35.851 17.302 -6.065 -3.276 0.534 H7 X2P 42
X2P H8 H8 H 0 1 N N N N N N 24.941 -34.904 19.246 -6.596 -1.933 -1.588 H8 X2P 43
X2P H9 H9 H 0 1 N N N N N N 24.951 -36.511 20.049 -6.349 -0.375 -0.633 H9 X2P 44
X2P H10 H10 H 0 1 N N N N N N 36.232 -37.950 23.590 4.404 3.086 -0.648 H10 X2P 45
X2P H11 H11 H 0 1 N N N N N N 37.520 -40.033 23.862 6.049 3.176 1.182 H11 X2P 46
X2P H12 H12 H 0 1 N N N N N N 36.767 -38.156 19.354 4.925 -1.139 -0.914 H12 X2P 47
X2P H13 H13 H 0 1 N N N N N N 36.043 -36.083 20.410 3.575 1.852 -2.562 H13 X2P 48
X2P H14 H14 H 0 1 N N N N N N 35.872 -35.976 22.195 3.799 0.090 -2.678 H14 X2P 49
X2P H15 H15 H 0 1 N N N N N N 31.317 -36.542 16.892 0.305 -3.868 -0.083 H15 X2P 50
X2P H16 H16 H 0 1 N N N N N N 27.506 -34.825 19.321 -4.142 -2.542 -1.166 H16 X2P 51
X2P H17 H17 H 0 1 N N N N N N 25.637 -38.457 18.144 -5.697 -2.117 2.643 H17 X2P 52
X2P H18 H18 H 0 1 N N N N N N 27.244 -38.160 17.398 -6.058 -0.565 1.823 H18 X2P 53
X2P H19 H19 H 0 1 N N N N N N 26.563 -36.091 24.244 -4.841 1.891 2.101 H19 X2P 54
X2P H20 H20 H 0 1 N N N N N N 26.203 -34.043 23.166 -4.748 3.730 -0.143 H20 X2P 55
X2P H21 H21 H 0 1 N N N N N N 24.274 -35.197 23.991 -7.302 2.065 1.857 H21 X2P 56
X2P H22 H22 H 0 1 N N N N N N 24.145 -36.006 22.393 -6.581 3.653 2.211 H22 X2P 57
X2P H23 H23 H 0 1 N N N N N N 24.319 -36.989 23.886 -7.088 3.256 0.551 H23 X2P 58
X2P H24 H24 H 0 1 N N N N N N 33.419 -38.421 22.160 1.781 2.745 -1.612 H24 X2P 59
X2P H25 H25 H 0 1 N N N N N N 34.110 -37.159 23.236 1.460 2.029 -0.019 H25 X2P 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X2P O C7 SING N N 1
X2P O1 C6 DOUB N N 2
X2P C14 C15 SING N N 3
X2P C14 C13 SING N N 4
X2P C15 C17 SING N N 5
X2P C15 C16 SING N N 6
X2P C6 C7 SING N N 7
X2P C6 N1 SING N N 8
X2P C7 C2 DOUB N N 9
X2P O4 C1 DOUB N N 10
X2P CL C23 SING N N 11
X2P C17 C16 SING N N 12
X2P C16 C8 SING N N 13
X2P C13 C8 SING N N 14
X2P N1 C8 SING N N 15
X2P N1 C5 SING N N 16
X2P C1 C2 SING N N 17
X2P C1 N SING N N 18
X2P C2 C3 SING N N 19
X2P C8 N2 SING N N 20
X2P C24 C23 DOUB Y N 21
X2P C24 C19 SING Y N 22
X2P C23 C22 SING Y N 23
X2P C5 C3 DOUB N N 24
X2P C5 C9 SING N N 25
X2P N C18 SING N N 26
X2P N C SING N N 27
X2P C3 C4 SING N N 28
X2P C18 C19 SING N N 29
X2P C19 C20 DOUB Y N 30
X2P N2 C9 SING N N 31
X2P N2 C10 SING N N 32
X2P C22 F SING N N 33
X2P C22 C21 DOUB Y N 34
X2P C9 O2 DOUB N N 35
X2P C C4 SING N N 36
X2P C10 C11 SING N N 37
X2P O3 C11 SING N N 38
X2P C20 C21 SING Y N 39
X2P C11 C12 SING N N 40
X2P C4 H1 SING N N 41
X2P C4 H2 SING N N 42
X2P C10 H3 SING N N 43
X2P C10 H4 SING N N 44
X2P C13 H5 SING N N 45
X2P C13 H6 SING N N 46
X2P C15 H7 SING N N 47
X2P C17 H8 SING N N 48
X2P C17 H9 SING N N 49
X2P C20 H10 SING N N 50
X2P C21 H11 SING N N 51
X2P C24 H12 SING N N 52
X2P C18 H13 SING N N 53
X2P C18 H14 SING N N 54
X2P O H15 SING N N 55
X2P C16 H16 SING N N 56
X2P C14 H17 SING N N 57
X2P C14 H18 SING N N 58
X2P C11 H19 SING N N 59
X2P O3 H20 SING N N 60
X2P C12 H21 SING N N 61
X2P C12 H22 SING N N 62
X2P C12 H23 SING N N 63
X2P C H24 SING N N 64
X2P C H25 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X2P SMILES ACDLabs 12.01 N13C5(N(CC(C)O)C(C1=C4CCN(Cc2ccc(F)c(c2)Cl)C(C4=C(C3=O)O)=O)=O)CCC6CC56
X2P InChI InChI 1.03 InChI=1S/C25H25ClFN3O5/c1-12(31)10-29-23(34)20-15-5-7-28(11-13-2-3-18(27)17(26)8-13)22(33)19(15)21(32)24(35)30(20)25(29)6-4-14-9-16(14)25/h2-3,8,12,14,16,31-32H,4-7,9-11H2,1H3/t12-,14-,16+,25+/m0/s1
X2P InChIKey InChI 1.03 SUYSDXIXCVFTRC-UCVJIWRCSA-N
X2P SMILES_CANONICAL CACTVS 3.385 C[C@H](O)CN1C(=O)C2=C3CCN(Cc4ccc(F)c(Cl)c4)C(=O)C3=C(O)C(=O)N2[C@@]15CC[C@H]6C[C@@H]56
X2P SMILES CACTVS 3.385 C[CH](O)CN1C(=O)C2=C3CCN(Cc4ccc(F)c(Cl)c4)C(=O)C3=C(O)C(=O)N2[C]15CC[CH]6C[CH]56
X2P SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@@H](CN1C(=O)C2=C3CCN(C(=O)C3=C(C(=O)N2[C@@]14CC[C@@H]5[C@H]4C5)O)Cc6ccc(c(c6)Cl)F)O
X2P SMILES "OpenEye OEToolkits" 1.9.2 CC(CN1C(=O)C2=C3CCN(C(=O)C3=C(C(=O)N2C14CCC5C4C5)O)Cc6ccc(c(c6)Cl)F)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X2P "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R,5S)-8'-(3-chloro-4-fluorobenzyl)-6'-hydroxy-2'-[(2S)-2-hydroxypropyl]-9',10'-dihydro-2'H-spiro[bicyclo[3.1.0]hexane-2,3'-imidazo[5,1-a][2,6]naphthyridine]-1',5',7'(8'H)-trione"
X2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(1'R,3R,5'S)-8-[(3-chloranyl-4-fluoranyl-phenyl)methyl]-6-oxidanyl-2-[(2S)-2-oxidanylpropyl]spiro[9,10-dihydroimidazo[5,1-a][2,6]naphthyridine-3,2'-bicyclo[3.1.0]hexane]-1,5,7-trione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X2P 'Create component' 2015-05-14 RCSB
X2P 'Initial release' 2015-10-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
X2P N1 N 7.659 -4.334 1
X2P C4 C 7.634 -0.194 2
X2P C5 C 8.123 -2.907 3
X2P C6 C 6.136 -4.682 4
X2P C7 C 5.081 -3.529 5
X2P C8 C 8.873 -5.215 6
X2P C10 C 11.513 -4.797 7
X2P C13 C 7.659 -6.097 8
X2P C15 C 9.623 -7.524 9
X2P C17 C 11.090 -7.212 10
X2P C20 C 3.439 4.368 11
X2P C21 C 3.908 5.793 12
X2P C22 C 5.377 6.099 13
X2P C24 C 5.907 3.555 14
X2P F F 5.846 7.524 15
X2P C23 C 6.376 4.980 16
X2P CL Cl 7.844 5.287 17
X2P C19 C 4.439 3.249 18
X2P C18 C 3.970 1.824 19
X2P N N 4.969 0.706 20
X2P C1 C 4.466 -0.842 21
X2P O4 O 3.000 -1.159 22
X2P C2 C 5.564 -2.043 23
X2P O O 3.615 -3.846 24
X2P O1 O 5.689 -6.114 25
X2P C16 C 10.086 -6.097 26
X2P C14 C 8.123 -7.524 27
X2P N2 N 10.086 -4.334 28
X2P C11 C 12.627 -3.793 29
X2P O3 O 14.054 -4.257 30
X2P C12 C 12.316 -2.326 31
X2P C9 C 9.623 -2.907 32
X2P O2 O 10.504 -1.694 33
X2P C3 C 7.095 -1.730 34
X2P C C 6.563 1.032 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
X2P O C7 SINGLE NONE 1
X2P O1 C6 DOUBLE NONE 2
X2P C14 C15 SINGLE NONE 3
X2P C14 C13 SINGLE NONE 4
X2P C15 C17 SINGLE NONE 5
X2P C15 C16 SINGLE NONE 6
X2P C6 C7 SINGLE NONE 7
X2P C6 N1 SINGLE NONE 8
X2P C7 C2 DOUBLE NONE 9
X2P O4 C1 DOUBLE NONE 10
X2P CL C23 SINGLE NONE 11
X2P C17 C16 SINGLE NONE 12
X2P C16 C8 SINGLE NONE 13
X2P C8 C13 SINGLE BEGINDASH 14
X2P N1 C8 SINGLE NONE 15
X2P N1 C5 SINGLE NONE 16
X2P C1 C2 SINGLE NONE 17
X2P C1 N SINGLE NONE 18
X2P C2 C3 SINGLE NONE 19
X2P C8 N2 SINGLE NONE 20
X2P C24 C23 DOUBLE NONE 21
X2P C24 C19 SINGLE NONE 22
X2P C23 C22 SINGLE NONE 23
X2P C5 C3 DOUBLE NONE 24
X2P C5 C9 SINGLE NONE 25
X2P N C18 SINGLE NONE 26
X2P N C SINGLE NONE 27
X2P C3 C4 SINGLE NONE 28
X2P C18 C19 SINGLE NONE 29
X2P C19 C20 DOUBLE NONE 30
X2P N2 C9 SINGLE NONE 31
X2P N2 C10 SINGLE NONE 32
X2P C22 F SINGLE NONE 33
X2P C22 C21 DOUBLE NONE 34
X2P C9 O2 DOUBLE NONE 35
X2P C C4 SINGLE NONE 36
X2P C10 C11 SINGLE NONE 37
X2P O3 C11 SINGLE NONE 38
X2P C20 C21 SINGLE NONE 39
X2P C11 C12 SINGLE BEGINDASH 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
X2P MurckoScaffold S1 scaffold 'O=C1N[C@]2(CC[C@H]3C[C@H]32)n2c1c1c(cc2=O)C(=O)N(Cc2ccccc2)CC1' InChI=1S/C22H21N3O3/c26-18-11-16-15(7-9-24(21(16)28)12-13-4-2-1-3-5-13)19-20(27)23-22(25(18)19)8-6-14-10-17(14)22/h1-5,11,14,17H,6-10,12H2,(H,23,27)/t14-,17+,22+/m0/s1 VFLQGWGRLFPVDS-WTBBCNCBSA-N
X2P amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
X2P cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
X2P cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
X2P cyclopropane F4 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
X2P phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
X2P pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
X2P Z992424146 F7 fragment NCc1ccc(F)c(Cl)c1 InChI=1S/C7H7ClFN/c8-6-3-5(4-10)1-2-7(6)9/h1-3H,4,10H2 LQAUXDMGRBWDIU-UHFFFAOYSA-N
X2P Z2856434770 F8 fragment CNCc1cccc(Cl)c1 InChI=1S/C8H10ClN/c1-10-6-7-3-2-4-8(9)5-7/h2-5,10H,6H2,1H3 ZPNLAQVYPIAHTO-UHFFFAOYSA-N
X2P Z2856434786 F9 fragment CNCc1ccncc1.Cl 'InChI=1S/C7H10N2.ClH/c1-8-6-7-2-4-9-5-3-7;/h2-5,8H,6H2,1H3;1H' CGWCAONYMGWAKJ-UHFFFAOYSA-N
X2P Z2856434893 F10 fragment CC(O)CNC1CCCCC1 InChI=1S/C9H19NO/c1-8(11)7-10-9-5-3-2-4-6-9/h8-11H,2-7H2,1H3 HFHPBMVMXFZJNO-UHFFFAOYSA-N
X2P Z1396419547 F11 fragment CC1CCCC1NCCO InChI=1S/C8H17NO/c1-7-3-2-4-8(7)9-5-6-10/h7-10H,2-6H2,1H3 VZZLRLOGBIIRNV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
X2P N1 S1 1
X2P C4 S1 1
X2P C5 S1 1
X2P C6 S1 1
X2P C7 S1 1
X2P C8 S1 1
X2P C13 S1 1
X2P C15 S1 1
X2P C17 S1 1
X2P C20 S1 1
X2P C21 S1 1
X2P C22 S1 1
X2P C24 S1 1
X2P C23 S1 1
X2P C19 S1 1
X2P C18 S1 1
X2P N S1 1
X2P C1 S1 1
X2P O4 S1 1
X2P C2 S1 1
X2P O1 S1 1
X2P C16 S1 1
X2P C14 S1 1
X2P N2 S1 1
X2P C9 S1 1
X2P O2 S1 1
X2P C3 S1 1
X2P C S1 1
X2P N F1 1
X2P C1 F1 1
X2P O4 F1 1
X2P C2 F1 1
X2P N2 F1 2
X2P C9 F1 2
X2P O2 F1 2
X2P C5 F1 2
X2P C8 F2 1
X2P C16 F2 1
X2P C17 F2 1
X2P C15 F2 1
X2P C14 F2 1
X2P C13 F2 1
X2P C8 F3 1
X2P C16 F3 1
X2P C15 F3 1
X2P C14 F3 1
X2P C13 F3 1
X2P C15 F4 1
X2P C17 F4 1
X2P C16 F4 1
X2P C20 F5 1
X2P C19 F5 1
X2P C24 F5 1
X2P C23 F5 1
X2P C22 F5 1
X2P C21 F5 1
X2P C5 F6 1
X2P C3 F6 1
X2P C2 F6 1
X2P C7 F6 1
X2P C6 F6 1
X2P N1 F6 1
X2P N F7 1
X2P C18 F7 1
X2P C19 F7 1
X2P C20 F7 1
X2P C21 F7 1
X2P C22 F7 1
X2P F F7 1
X2P C23 F7 1
X2P CL F7 1
X2P C24 F7 1
X2P C1 F8 1
X2P N F8 1
X2P C18 F8 1
X2P C19 F8 1
X2P C20 F8 1
X2P C21 F8 1
X2P C22 F8 1
X2P C23 F8 1
X2P CL F8 1
X2P C24 F8 1
X2P C F8 2
X2P N F8 2
X2P C18 F8 2
X2P C19 F8 2
X2P C20 F8 2
X2P C21 F8 2
X2P C22 F8 2
X2P C23 F8 2
X2P CL F8 2
X2P C24 F8 2
X2P CL F9 1
X2P C18 F9 1
X2P N F9 1
X2P C1 F9 1
X2P C2 F9 1
X2P C7 F9 1
X2P C6 F9 1
X2P N1 F9 1
X2P C5 F9 1
X2P C3 F9 1
X2P CL F9 2
X2P C F9 2
X2P N F9 2
X2P C1 F9 2
X2P C2 F9 2
X2P C7 F9 2
X2P C6 F9 2
X2P N1 F9 2
X2P C5 F9 2
X2P C3 F9 2
X2P C12 F10 1
X2P C11 F10 1
X2P O3 F10 1
X2P C10 F10 1
X2P N2 F10 1
X2P C8 F10 1
X2P C16 F10 1
X2P C17 F10 1
X2P C15 F10 1
X2P C14 F10 1
X2P C13 F10 1
X2P C17 F11 1
X2P C16 F11 1
X2P C15 F11 1
X2P C14 F11 1
X2P C13 F11 1
X2P C8 F11 1
X2P N2 F11 1
X2P C10 F11 1
X2P C11 F11 1
X2P O3 F11 1
#
_pdbe_chem_comp_rdkit_properties.comp_id X2P
_pdbe_chem_comp_rdkit_properties.exactmw 501.147
_pdbe_chem_comp_rdkit_properties.amw 501.942
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.480
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 240.363
_pdbe_chem_comp_rdkit_properties.tpsa 103.080
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.683
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.178
_pdbe_chem_comp_rdkit_properties.chi0v 17.395
_pdbe_chem_comp_rdkit_properties.chi1v 9.789
_pdbe_chem_comp_rdkit_properties.chi2v 5.667
_pdbe_chem_comp_rdkit_properties.chi3v 5.667
_pdbe_chem_comp_rdkit_properties.chi4v 4.104
_pdbe_chem_comp_rdkit_properties.chi0n 41.639
_pdbe_chem_comp_rdkit_properties.chi1n 21.728
_pdbe_chem_comp_rdkit_properties.chi2n 5.407
_pdbe_chem_comp_rdkit_properties.chi3n 5.407
_pdbe_chem_comp_rdkit_properties.chi4n 3.962
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.910
_pdbe_chem_comp_rdkit_properties.kappa1 8.046
_pdbe_chem_comp_rdkit_properties.kappa2 7.543
_pdbe_chem_comp_rdkit_properties.kappa3 3.036
_pdbe_chem_comp_rdkit_properties.Phi 1.734
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
X2P UniChem ChEMBL CHEMBL3623814
X2P UniChem PDBe X2P
X2P UniChem ZINC ZINC000222573185
X2P UniChem SureChEMBL SCHEMBL16978668
X2P UniChem Nikkaji J3.477.398J
X2P UniChem PubChem 86577515
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
X2P N1 -1.498 0.651 -0.563 ETKDGv3 1
X2P C4 1.378 -1.842 -0.243 ETKDGv3 2
X2P C5 -0.755 -0.541 -0.384 ETKDGv3 3
X2P C6 -0.822 1.885 -0.837 ETKDGv3 4
X2P C7 0.647 1.859 -0.998 ETKDGv3 5
X2P C8 -2.947 0.369 -0.461 ETKDGv3 6
X2P C10 -4.230 -1.901 0.038 ETKDGv3 7
X2P C13 -3.635 0.661 -1.806 ETKDGv3 8
X2P C15 -4.312 2.375 -0.175 ETKDGv3 9
X2P C17 -5.101 1.427 0.701 ETKDGv3 10
X2P C20 6.067 -0.687 1.104 ETKDGv3 11
X2P C21 6.972 0.013 2.039 ETKDGv3 12
X2P C22 7.536 1.174 1.687 ETKDGv3 13
X2P C24 6.437 1.124 -0.494 ETKDGv3 14
X2P F 8.364 1.813 2.551 ETKDGv3 15
X2P C23 7.255 1.759 0.357 ETKDGv3 16
X2P CL 7.990 3.284 -0.106 ETKDGv3 17
X2P C19 5.811 -0.166 -0.109 ETKDGv3 18
X2P C18 4.864 -0.856 -1.053 ETKDGv3 19
X2P N 3.473 -0.614 -0.648 ETKDGv3 20
X2P C1 2.788 0.591 -1.038 ETKDGv3 21
X2P O4 3.431 1.530 -1.582 ETKDGv3 22
X2P C2 1.319 0.691 -0.835 ETKDGv3 23
X2P O 1.327 3.037 -1.314 ETKDGv3 24
X2P O1 -1.458 2.968 -0.932 ETKDGv3 25
X2P C16 -3.580 1.287 0.595 ETKDGv3 26
X2P C14 -4.297 2.029 -1.662 ETKDGv3 27
X2P N2 -3.023 -1.069 -0.091 ETKDGv3 28
X2P C11 -4.397 -2.501 1.450 ETKDGv3 29
X2P O3 -3.362 -3.410 1.716 ETKDGv3 30
X2P C12 -4.441 -1.427 2.541 ETKDGv3 31
X2P C9 -1.701 -1.604 -0.140 ETKDGv3 32
X2P O2 -1.437 -2.836 -0.104 ETKDGv3 33
X2P C3 0.591 -0.566 -0.455 ETKDGv3 34
X2P C 2.793 -1.546 0.256 ETKDGv3 35
X2P H1 0.893 -2.482 0.523 ETKDGv3 36
X2P H2 1.428 -2.403 -1.200 ETKDGv3 37
X2P H3 -4.180 -2.728 -0.702 ETKDGv3 38
X2P H4 -5.137 -1.322 -0.211 ETKDGv3 39
X2P H5 -2.910 0.658 -2.650 ETKDGv3 40
X2P H6 -4.415 -0.095 -2.033 ETKDGv3 41
X2P H7 -4.158 3.412 0.194 ETKDGv3 42
X2P H8 -5.748 0.737 0.127 ETKDGv3 43
X2P H9 -5.454 1.899 1.642 ETKDGv3 44
X2P H10 5.614 -1.621 1.412 ETKDGv3 45
X2P H11 7.174 -0.418 3.011 ETKDGv3 46
X2P H12 6.234 1.553 -1.467 ETKDGv3 47
X2P H13 5.080 -1.947 -1.067 ETKDGv3 48
X2P H14 5.022 -0.502 -2.095 ETKDGv3 49
X2P H15 0.843 3.917 -1.442 ETKDGv3 50
X2P H16 -2.969 1.685 1.434 ETKDGv3 51
X2P H17 -5.331 2.018 -2.068 ETKDGv3 52
X2P H18 -3.713 2.797 -2.212 ETKDGv3 53
X2P H19 -5.371 -3.043 1.462 ETKDGv3 54
X2P H20 -3.668 -3.986 2.465 ETKDGv3 55
X2P H21 -4.580 -1.906 3.533 ETKDGv3 56
X2P H22 -5.298 -0.744 2.370 ETKDGv3 57
X2P H23 -3.495 -0.847 2.562 ETKDGv3 58
X2P H24 3.355 -2.501 0.344 ETKDGv3 59
X2P H25 2.738 -1.091 1.270 ETKDGv3 60
#