data_X99
#
_chem_comp.id X99
_chem_comp.name 2-{3-[(2S)-4,4-difluoro-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]-3-oxopropyl}-isoindole-1,3(2H)-dione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H21 F2 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-10-09
_chem_comp.pdbx_modified_date 2020-08-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 405.395
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X99
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3EQ7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X99 C C1 C 0 1 N N N N N N 6.773 38.021 30.682 0.532 -0.192 -0.581 C X99 1
X99 O O1 O 0 1 N N N N N N 7.422 37.914 29.634 0.799 -1.128 -1.305 O X99 2
X99 C1 C2 C 0 1 N N N N N N 7.312 38.436 31.837 -0.900 0.080 -0.199 C1 X99 3
X99 C2 C3 C 0 1 N N N N N N 8.831 38.657 31.684 -1.810 -0.957 -0.859 C2 X99 4
X99 N3 N1 N 0 1 N N N N N N 9.430 38.631 33.006 -3.202 -0.692 -0.488 N3 X99 5
X99 C4 C4 C 0 1 N N N N N N 10.075 37.580 33.534 -4.036 0.105 -1.180 C4 X99 6
X99 C5 C5 C 0 1 N N N N N N 9.440 39.671 33.873 -3.817 -1.218 0.587 C5 X99 7
X99 O6 O2 O 0 1 N N N N N N 10.210 36.482 33.024 -3.758 0.710 -2.196 O6 X99 8
X99 O7 O3 O 0 1 N N N N N N 8.925 40.777 33.704 -3.313 -1.976 1.391 O7 X99 9
X99 C8 C6 C 0 1 Y N N N N N 10.584 37.941 34.905 -5.347 0.122 -0.498 C8 X99 10
X99 C9 C7 C 0 1 Y N N N N N 11.303 37.212 35.868 -6.558 0.749 -0.743 C9 X99 11
X99 C10 C8 C 0 1 Y N N N N N 11.591 37.880 37.073 -7.624 0.547 0.120 C10 X99 12
X99 C11 C9 C 0 1 Y N N N N N 11.187 39.214 37.291 -7.486 -0.275 1.223 C11 X99 13
X99 C12 C10 C 0 1 Y N N N N N 10.470 39.932 36.318 -6.281 -0.909 1.481 C12 X99 14
X99 C13 C11 C 0 1 Y N N N N N 10.184 39.261 35.122 -5.208 -0.720 0.625 C13 X99 15
X99 N N2 N 0 1 N N N N N N 5.430 38.009 30.683 1.517 0.600 -0.113 N X99 16
X99 CD C12 C 0 1 N N N N N N 4.483 38.425 31.731 1.336 1.762 0.776 CD X99 17
X99 CA C13 C 0 1 N N S N N N 4.729 37.572 29.472 2.951 0.445 -0.400 CA X99 18
X99 CB C14 C 0 1 N N N N N N 3.499 36.895 30.017 3.689 1.590 0.325 CB X99 19
X99 CG C15 C 0 1 N N N N N N 3.218 37.631 31.336 2.576 2.654 0.520 CG X99 20
X99 C3 C16 C 0 1 N N N N N N 4.380 38.725 28.543 3.435 -0.886 0.116 C3 X99 21
X99 O1 O5 O 0 1 N N N N N N 4.702 39.883 28.819 2.664 -1.638 0.671 O1 X99 22
X99 F1 F1 F 0 1 N N N N N N 2.929 36.729 32.305 2.410 3.424 -0.636 F1 X99 23
X99 F2 F2 F 0 1 N N N N N N 2.178 38.481 31.155 2.847 3.467 1.626 F2 X99 24
X99 N1 N3 N 0 1 N N N N N N 3.697 38.426 27.426 4.727 -1.239 -0.040 N1 X99 25
X99 CD1 C17 C 0 1 N N N N N N 3.222 37.069 27.098 5.331 -2.500 0.413 CD1 X99 26
X99 CA1 C18 C 0 1 N N N N N N 3.288 39.404 26.421 5.766 -0.426 -0.698 CA1 X99 27
X99 CB1 C19 C 0 1 N N N N N N 2.840 38.522 25.254 7.102 -0.928 -0.096 CB1 X99 28
X99 CG1 C20 C 0 1 N N N N N N 2.344 37.288 25.900 6.828 -2.451 0.042 CG1 X99 29
X99 H1 H1 H 0 1 N N N N N N 6.840 39.384 32.133 -1.005 0.020 0.884 H1 X99 30
X99 H1A H2 H 0 1 N N N N N N 7.142 37.665 32.603 -1.182 1.078 -0.536 H1A X99 31
X99 H2 H3 H 0 1 N N N N N N 9.264 37.860 31.062 -1.705 -0.896 -1.942 H2 X99 32
X99 H2A H4 H 0 1 N N N N N N 9.026 39.625 31.199 -1.528 -1.955 -0.522 H2A X99 33
X99 H9 H5 H 0 1 N N N N N N 11.618 36.194 35.693 -6.671 1.393 -1.603 H9 X99 34
X99 H10 H6 H 0 1 N N N N N N 12.134 37.360 37.848 -8.568 1.036 -0.070 H10 X99 35
X99 H11 H7 H 0 1 N N N N N N 11.434 39.694 38.226 -8.324 -0.424 1.888 H11 X99 36
X99 H12 H8 H 0 1 N N N N N N 10.155 40.952 36.484 -6.179 -1.550 2.344 H12 X99 37
X99 HD H11 H 0 1 N N N N N N 4.838 38.166 32.739 0.423 2.298 0.518 HD X99 38
X99 HDA H12 H 0 1 N N N N N N 4.328 39.513 31.785 1.305 1.441 1.818 HDA X99 39
X99 HA H13 H 0 1 N N N N N N 5.346 36.913 28.844 3.123 0.514 -1.474 HA X99 40
X99 HB H14 H 0 1 N N N N N N 2.652 36.986 29.321 4.070 1.253 1.289 HB X99 41
X99 HBA H15 H 0 1 N N N N N N 3.645 35.814 30.162 4.496 1.981 -0.294 HBA X99 42
X99 HD1 H18 H 0 1 N N N N N N 4.058 36.393 26.868 5.219 -2.598 1.492 HD1 X99 43
X99 HDA1 H19 H 0 0 N N N N N N 2.692 36.588 27.934 4.852 -3.341 -0.089 HDA1 X99 44
X99 HA1 H20 H 0 1 N N N N N N 2.472 40.046 26.784 5.750 -0.591 -1.776 HA1 X99 45
X99 HAA H21 H 0 1 N N N N N N 4.089 40.107 26.150 5.622 0.630 -0.473 HAA X99 46
X99 HB1 H22 H 0 1 N N N N N N 2.049 39.010 24.666 7.932 -0.742 -0.778 HB1 X99 47
X99 HBA1 H23 H 0 0 N N N N N N 3.655 38.323 24.542 7.288 -0.473 0.877 HBA1 X99 48
X99 HG H24 H 0 1 N N N N N N 2.410 36.435 25.209 7.436 -2.884 0.835 HG X99 49
X99 HGA H25 H 0 1 N N N N N N 1.287 37.382 26.188 7.008 -2.960 -0.905 HGA X99 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X99 C C1 SING N N 1
X99 O C DOUB N N 2
X99 C1 H1 SING N N 3
X99 C1 H1A SING N N 4
X99 C2 C1 SING N N 5
X99 C2 N3 SING N N 6
X99 C2 H2 SING N N 7
X99 C2 H2A SING N N 8
X99 N3 C4 SING N N 9
X99 N3 C5 SING N N 10
X99 C4 C8 SING N N 11
X99 C5 C13 SING N N 12
X99 O6 C4 DOUB N N 13
X99 O7 C5 DOUB N N 14
X99 C8 C13 DOUB Y N 15
X99 C8 C9 SING Y N 16
X99 C9 C10 DOUB Y N 17
X99 C9 H9 SING N N 18
X99 C10 C11 SING Y N 19
X99 C10 H10 SING N N 20
X99 C11 H11 SING N N 21
X99 C12 C11 DOUB Y N 22
X99 C12 H12 SING N N 23
X99 C13 C12 SING Y N 24
X99 N CD SING N N 25
X99 CD HD SING N N 26
X99 CD HDA SING N N 27
X99 CA N SING N N 28
X99 CA CB SING N N 29
X99 CA HA SING N N 30
X99 CB CG SING N N 31
X99 CB HB SING N N 32
X99 CB HBA SING N N 33
X99 CG CD SING N N 34
X99 CG F1 SING N N 35
X99 C3 CA SING N N 36
X99 C3 O1 DOUB N N 37
X99 F2 CG SING N N 38
X99 N1 CD1 SING N N 39
X99 N1 CA1 SING N N 40
X99 CD1 CG1 SING N N 41
X99 CA1 CB1 SING N N 42
X99 CB1 CG1 SING N N 43
X99 CD1 HD1 SING N N 44
X99 CD1 HDA1 SING N N 45
X99 CA1 HA1 SING N N 46
X99 CA1 HAA SING N N 47
X99 CB1 HB1 SING N N 48
X99 CB1 HBA1 SING N N 49
X99 CG1 HG SING N N 50
X99 CG1 HGA SING N N 51
X99 C N SING N N 52
X99 C3 N1 SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X99 SMILES ACDLabs 10.04 FC4(F)CC(C(=O)N1CCCC1)N(C(=O)CCN3C(=O)c2ccccc2C3=O)C4
X99 SMILES_CANONICAL CACTVS 3.341 FC1(F)C[C@H](N(C1)C(=O)CCN2C(=O)c3ccccc3C2=O)C(=O)N4CCCC4
X99 SMILES CACTVS 3.341 FC1(F)C[CH](N(C1)C(=O)CCN2C(=O)c3ccccc3C2=O)C(=O)N4CCCC4
X99 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)C(=O)N(C2=O)CCC(=O)N3CC(C[C@H]3C(=O)N4CCCC4)(F)F
X99 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)C(=O)N(C2=O)CCC(=O)N3CC(CC3C(=O)N4CCCC4)(F)F
X99 InChI InChI 1.03 InChI=1S/C20H21F2N3O4/c21-20(22)11-15(19(29)23-8-3-4-9-23)25(12-20)16(26)7-10-24-17(27)13-5-1-2-6-14(13)18(24)28/h1-2,5-6,15H,3-4,7-12H2/t15-/m0/s1
X99 InChIKey InChI 1.03 ZSXNPAWXICXNGZ-HNNXBMFYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X99 "SYSTEMATIC NAME" ACDLabs 10.04 2-{3-[(2S)-4,4-difluoro-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]-3-oxopropyl}-1H-isoindole-1,3(2H)-dione
X99 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 2-[3-[(2S)-4,4-difluoro-2-pyrrolidin-1-ylcarbonyl-pyrrolidin-1-yl]-3-oxo-propyl]isoindole-1,3-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X99 'Create component' 2008-10-09 RCSB
X99 'Modify aromatic_flag' 2011-06-04 RCSB
X99 'Modify descriptor' 2011-06-04 RCSB
X99 'Modify subcomponent list' 2012-01-11 RCSB
X99 'Other modification' 2020-08-12 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id X99
_pdbe_chem_comp_drugbank_details.drugbank_id DB08739
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'2-{3-[(2S)-4,4-difluoro-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]-3-oxopropyl}-isoindole-1,3(2H)-dione'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id X99
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08739
_pdbe_chem_comp_drugbank_classification.parent 'Hybrid peptides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Peptidomimetics
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as hybrid peptides. These are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id X99
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08739
_pdbe_chem_comp_drugbank_targets.name 'Prolyl endopeptidase'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P48147
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
X99 C C 11.643 0.520 1
X99 O O 12.393 1.819 2
X99 C1 C 10.143 0.520 3
X99 C2 C 9.393 1.819 4
X99 N3 N 7.893 1.819 5
X99 C4 C 7.018 3.026 6
X99 C5 C 7.018 0.612 7
X99 O6 O 7.483 4.452 8
X99 O7 O 7.483 -0.814 9
X99 C8 C 5.598 2.569 10
X99 C9 C 4.299 3.319 11
X99 C10 C 3.000 2.569 12
X99 C11 C 3.000 1.069 13
X99 C12 C 4.299 0.319 14
X99 C13 C 5.598 1.069 15
X99 N N 12.393 -0.779 16
X99 CD C 11.783 -2.149 17
X99 CA C 13.885 -0.936 18
X99 CB C 14.196 -2.403 19
X99 CG C 12.897 -3.153 20
X99 C3 C 14.888 0.179 21
X99 O1 O 14.425 1.606 22
X99 F1 F 13.647 -4.452 23
X99 F2 F 11.894 -4.268 24
X99 N1 N 16.356 -0.133 25
X99 CD1 C 16.966 -1.503 26
X99 CA1 C 17.470 0.871 27
X99 CB1 C 18.769 0.121 28
X99 CG1 C 18.457 -1.346 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
X99 C C1 SINGLE NONE 1
X99 O C DOUBLE NONE 2
X99 C2 C1 SINGLE NONE 3
X99 C2 N3 SINGLE NONE 4
X99 N3 C4 SINGLE NONE 5
X99 N3 C5 SINGLE NONE 6
X99 C4 C8 SINGLE NONE 7
X99 C5 C13 SINGLE NONE 8
X99 O6 C4 DOUBLE NONE 9
X99 O7 C5 DOUBLE NONE 10
X99 C8 C13 DOUBLE NONE 11
X99 C8 C9 SINGLE NONE 12
X99 C9 C10 DOUBLE NONE 13
X99 C10 C11 SINGLE NONE 14
X99 C12 C11 DOUBLE NONE 15
X99 C13 C12 SINGLE NONE 16
X99 N CD SINGLE NONE 17
X99 CA N SINGLE NONE 18
X99 CA CB SINGLE NONE 19
X99 CB CG SINGLE NONE 20
X99 CG CD SINGLE NONE 21
X99 CG F1 SINGLE NONE 22
X99 CA C3 SINGLE BEGINDASH 23
X99 C3 O1 DOUBLE NONE 24
X99 F2 CG SINGLE NONE 25
X99 N1 CD1 SINGLE NONE 26
X99 N1 CA1 SINGLE NONE 27
X99 CD1 CG1 SINGLE NONE 28
X99 CA1 CB1 SINGLE NONE 29
X99 CB1 CG1 SINGLE NONE 30
X99 C N SINGLE NONE 31
X99 C3 N1 SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
X99 MurckoScaffold S1 scaffold 'O=C([C@@H]1CCCN1C(=O)CCN1C(=O)c2ccccc2C1=O)N1CCCC1' InChI=1S/C20H23N3O4/c24-17(22-12-5-8-16(22)20(27)21-10-3-4-11-21)9-13-23-18(25)14-6-1-2-7-15(14)19(23)26/h1-2,6-7,16H,3-5,8-13H2/t16-/m0/s1 LIUVUIPCJKXZGP-INIZCTEOSA-N
X99 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
X99 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
X99 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
X99 C S1 1
X99 O S1 1
X99 C1 S1 1
X99 C2 S1 1
X99 N3 S1 1
X99 C4 S1 1
X99 C5 S1 1
X99 O6 S1 1
X99 O7 S1 1
X99 C8 S1 1
X99 C9 S1 1
X99 C10 S1 1
X99 C11 S1 1
X99 C12 S1 1
X99 C13 S1 1
X99 N S1 1
X99 CD S1 1
X99 CA S1 1
X99 CB S1 1
X99 CG S1 1
X99 C3 S1 1
X99 O1 S1 1
X99 N1 S1 1
X99 CD1 S1 1
X99 CA1 S1 1
X99 CB1 S1 1
X99 CG1 S1 1
X99 N3 F1 1
X99 C4 F1 1
X99 O6 F1 1
X99 C8 F1 1
X99 N3 F1 2
X99 C5 F1 2
X99 O7 F1 2
X99 C13 F1 2
X99 N F1 3
X99 C F1 3
X99 O F1 3
X99 C1 F1 3
X99 N1 F1 4
X99 C3 F1 4
X99 O1 F1 4
X99 CA F1 4
X99 O1 F2 1
X99 C3 F2 1
X99 CA F2 1
X99 N F2 1
X99 C8 F3 1
X99 C13 F3 1
X99 C12 F3 1
X99 C11 F3 1
X99 C10 F3 1
X99 C9 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id X99
_pdbe_chem_comp_rdkit_properties.exactmw 405.150
_pdbe_chem_comp_rdkit_properties.amw 405.401
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 195.284
_pdbe_chem_comp_rdkit_properties.tpsa 78
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.422
_pdbe_chem_comp_rdkit_properties.CrippenMR 96.773
_pdbe_chem_comp_rdkit_properties.chi0v 13.731
_pdbe_chem_comp_rdkit_properties.chi1v 7.457
_pdbe_chem_comp_rdkit_properties.chi2v 3.554
_pdbe_chem_comp_rdkit_properties.chi3v 3.554
_pdbe_chem_comp_rdkit_properties.chi4v 2.344
_pdbe_chem_comp_rdkit_properties.chi0n 34.731
_pdbe_chem_comp_rdkit_properties.chi1n 17.957
_pdbe_chem_comp_rdkit_properties.chi2n 3.554
_pdbe_chem_comp_rdkit_properties.chi3n 3.554
_pdbe_chem_comp_rdkit_properties.chi4n 2.344
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.840
_pdbe_chem_comp_rdkit_properties.kappa1 6.582
_pdbe_chem_comp_rdkit_properties.kappa2 7.201
_pdbe_chem_comp_rdkit_properties.kappa3 3.493
_pdbe_chem_comp_rdkit_properties.Phi 1.634
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
X99 UniChem ChEMBL CHEMBL458975
X99 UniChem DrugBank DB08739
X99 UniChem PDBe X99
X99 UniChem ZINC ZINC000039197308
X99 UniChem 'PubChem TPHARMA' 56424262
X99 UniChem BRENDA 70999
X99 UniChem 'Probes And Drugs' PD004164
X99 UniChem BindingDb 50274983
X99 UniChem PubChem 25102845
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
X99 C 0.368 -2.857 -0.967 ETKDGv3 1
X99 O 1.040 -3.917 -1.094 ETKDGv3 2
X99 C1 1.070 -1.550 -0.708 ETKDGv3 3
X99 C2 2.532 -1.700 -0.275 ETKDGv3 4
X99 N3 3.042 -0.409 0.186 ETKDGv3 5
X99 C4 2.685 0.203 1.428 ETKDGv3 6
X99 C5 3.291 0.717 -0.660 ETKDGv3 7
X99 O6 2.301 -0.433 2.445 ETKDGv3 8
X99 O7 3.563 0.633 -1.887 ETKDGv3 9
X99 C8 2.755 1.655 1.319 ETKDGv3 10
X99 C9 2.389 2.699 2.291 ETKDGv3 11
X99 C10 2.438 3.983 1.894 ETKDGv3 12
X99 C11 2.846 4.328 0.500 ETKDGv3 13
X99 C12 3.169 3.358 -0.375 ETKDGv3 14
X99 C13 3.114 1.960 0.083 ETKDGv3 15
X99 N -1.066 -2.905 -1.111 ETKDGv3 16
X99 CD -1.782 -4.144 -1.368 ETKDGv3 17
X99 CA -1.935 -1.732 -1.161 ETKDGv3 18
X99 CB -3.282 -2.250 -1.672 ETKDGv3 19
X99 CG -3.257 -3.763 -1.450 ETKDGv3 20
X99 C3 -2.073 -1.119 0.218 ETKDGv3 21
X99 O1 -2.439 -1.856 1.175 ETKDGv3 22
X99 F1 -3.893 -4.073 -0.259 ETKDGv3 23
X99 F2 -3.884 -4.427 -2.491 ETKDGv3 24
X99 N1 -1.770 0.268 0.473 ETKDGv3 25
X99 CD1 -1.445 1.253 -0.547 ETKDGv3 26
X99 CA1 -1.735 0.821 1.815 ETKDGv3 27
X99 CB1 -1.529 2.320 1.644 ETKDGv3 28
X99 CG1 -1.061 2.521 0.205 ETKDGv3 29
X99 H1 0.538 -1.020 0.104 ETKDGv3 30
X99 H1A 1.021 -0.929 -1.628 ETKDGv3 31
X99 H2 2.613 -2.439 0.552 ETKDGv3 32
X99 H2A 3.146 -2.061 -1.129 ETKDGv3 33
X99 H9 2.079 2.439 3.295 ETKDGv3 34
X99 H10 2.170 4.772 2.584 ETKDGv3 35
X99 H11 2.874 5.365 0.192 ETKDGv3 36
X99 H12 3.452 3.599 -1.391 ETKDGv3 37
X99 HD -1.603 -4.870 -0.545 ETKDGv3 38
X99 HDA -1.435 -4.578 -2.331 ETKDGv3 39
X99 HA -1.532 -1.007 -1.897 ETKDGv3 40
X99 HB -4.152 -1.775 -1.167 ETKDGv3 41
X99 HBA -3.361 -2.042 -2.762 ETKDGv3 42
X99 HD1 -2.333 1.431 -1.191 ETKDGv3 43
X99 HDA1 -0.586 0.917 -1.164 ETKDGv3 44
X99 HA1 -2.691 0.618 2.345 ETKDGv3 45
X99 HAA -0.887 0.374 2.378 ETKDGv3 46
X99 HB1 -2.495 2.849 1.796 ETKDGv3 47
X99 HBA1 -0.782 2.710 2.368 ETKDGv3 48
X99 HG -1.533 3.418 -0.250 ETKDGv3 49
X99 HGA 0.044 2.645 0.189 ETKDGv3 50
#