data_X9N # _chem_comp.id X9N _chem_comp.name 1-[4-(4-ethylpiperazin-1-yl)-3-fluorophenyl]butan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 F N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-07 _chem_comp.pdbx_modified_date 2023-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X9N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F0W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X9N N1 N1 N 0 1 N N N N N N -13.094 -10.799 -4.133 -4.520 0.275 0.185 N1 X9N 1 X9N C7 C1 C 0 1 Y N N N N N -9.744 -12.805 -5.729 -0.390 -0.101 0.079 C7 X9N 2 X9N C8 C2 C 0 1 N N N N N N -11.013 -12.067 -3.856 -2.368 0.124 1.341 C8 X9N 3 X9N C9 C3 C 0 1 N N N N N N -12.421 -11.869 -3.372 -3.845 -0.273 1.370 C9 X9N 4 X9N C1 C4 C 0 1 N N N N N N -5.788 -15.677 -7.587 4.761 -0.352 -0.099 C1 X9N 5 X9N C5 C5 C 0 1 Y N N N N N -7.816 -12.494 -7.119 1.385 1.501 0.116 C5 X9N 6 X9N C6 C6 C 0 1 Y N N N N N -8.994 -12.018 -6.595 0.049 1.218 0.137 C6 X9N 7 X9N C4 C7 C 0 1 Y N N N N N -7.368 -13.778 -6.849 2.320 0.463 0.023 C4 X9N 8 X9N C3 C8 C 0 1 N N N N N N -5.819 -16.841 -9.860 7.195 -0.903 -0.205 C3 X9N 9 X9N C2 C9 C 0 1 N N N N N N -5.002 -16.100 -8.857 6.175 0.232 -0.105 C2 X9N 10 X9N F F1 F 0 1 N N N N N N -9.890 -14.867 -4.520 0.105 -2.425 -0.053 F X9N 11 X9N C14 C10 C 0 1 Y N N N N N -9.217 -14.090 -5.406 0.534 -1.144 -0.002 C14 X9N 12 X9N C15 C11 C 0 1 Y N N N N N -8.073 -14.582 -5.952 1.882 -0.867 -0.030 C15 X9N 13 X9N C C12 C 0 1 N N N N N N -6.228 -14.240 -7.675 3.756 0.767 0.000 C X9N 14 X9N O O1 O 0 1 N N N N N N -5.672 -13.477 -8.437 4.133 1.918 0.061 O X9N 15 X9N N N2 N 0 1 N N N N N N -10.992 -12.390 -5.286 -1.751 -0.382 0.107 N X9N 16 X9N C13 C13 C 0 1 N N N N N N -11.720 -11.356 -6.052 -2.426 0.166 -1.078 C13 X9N 17 X9N C12 C14 C 0 1 N N N N N N -13.138 -11.194 -5.528 -3.904 -0.231 -1.049 C12 X9N 18 X9N C10 C15 C 0 1 N N N N N N -14.428 -10.464 -3.514 -5.959 -0.022 0.214 C10 X9N 19 X9N C11 C16 C 0 1 N N N N N N -15.483 -11.543 -3.462 -6.665 0.767 -0.890 C11 X9N 20 X9N H2 H2 H 0 1 N N N N N N -10.551 -12.892 -3.294 -2.282 1.210 1.372 H2 X9N 21 X9N H3 H3 H 0 1 N N N N N N -10.441 -11.143 -3.687 -1.859 -0.305 2.204 H3 X9N 22 X9N H4 H4 H 0 1 N N N N N N -12.400 -11.595 -2.307 -4.312 0.125 2.271 H4 X9N 23 X9N H5 H5 H 0 1 N N N N N N -12.981 -12.808 -3.499 -3.930 -1.360 1.367 H5 X9N 24 X9N H6 H6 H 0 1 N N N N N N -6.675 -16.319 -7.483 4.594 -0.909 -1.021 H6 X9N 25 X9N H7 H7 H 0 1 N N N N N N -5.141 -15.801 -6.706 4.647 -1.020 0.755 H7 X9N 26 X9N H8 H8 H 0 1 N N N N N N -7.225 -11.853 -7.756 1.719 2.527 0.157 H8 X9N 27 X9N H9 H9 H 0 1 N N N N N N -9.338 -11.028 -6.857 -0.670 2.022 0.199 H9 X9N 28 X9N H10 H10 H 0 1 N N N N N N -5.191 -17.102 -10.724 8.203 -0.487 -0.209 H10 X9N 29 X9N H11 H11 H 0 1 N N N N N N -6.215 -17.760 -9.403 7.081 -1.571 0.649 H11 X9N 30 X9N H12 H12 H 0 1 N N N N N N -6.654 -16.207 -10.192 7.029 -1.461 -1.127 H12 X9N 31 X9N H13 H13 H 0 1 N N N N N N -4.167 -16.745 -8.547 6.289 0.900 -0.958 H13 X9N 32 X9N H14 H14 H 0 1 N N N N N N -4.606 -15.193 -9.336 6.341 0.789 0.817 H14 X9N 33 X9N H15 H15 H 0 1 N N N N N N -7.719 -15.570 -5.698 2.599 -1.672 -0.101 H15 X9N 34 X9N H16 H16 H 0 1 N N N N N N -11.758 -11.652 -7.111 -2.341 1.253 -1.075 H16 X9N 35 X9N H17 H17 H 0 1 N N N N N N -11.189 -10.397 -5.958 -1.960 -0.233 -1.979 H17 X9N 36 X9N H18 H18 H 0 1 N N N N N N -13.659 -10.421 -6.112 -3.989 -1.317 -1.080 H18 X9N 37 X9N H19 H19 H 0 1 N N N N N N -13.675 -12.149 -5.622 -4.412 0.199 -1.913 H19 X9N 38 X9N H20 H20 H 0 1 N N N N N N -14.236 -10.146 -2.479 -6.113 -1.089 0.055 H20 X9N 39 X9N H21 H21 H 0 1 N N N N N N -14.850 -9.623 -4.084 -6.369 0.264 1.183 H21 X9N 40 X9N H22 H22 H 0 1 N N N N N N -16.391 -11.146 -2.985 -7.732 0.547 -0.868 H22 X9N 41 X9N H23 H23 H 0 1 N N N N N N -15.720 -11.874 -4.484 -6.510 1.834 -0.731 H23 X9N 42 X9N H24 H24 H 0 1 N N N N N N -15.106 -12.396 -2.879 -6.255 0.481 -1.859 H24 X9N 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X9N C3 C2 SING N N 1 X9N C2 C1 SING N N 2 X9N O C DOUB N N 3 X9N C C1 SING N N 4 X9N C C4 SING N N 5 X9N C5 C4 DOUB Y N 6 X9N C5 C6 SING Y N 7 X9N C4 C15 SING Y N 8 X9N C6 C7 DOUB Y N 9 X9N C13 C12 SING N N 10 X9N C13 N SING N N 11 X9N C15 C14 DOUB Y N 12 X9N C7 C14 SING Y N 13 X9N C7 N SING N N 14 X9N C12 N1 SING N N 15 X9N C14 F SING N N 16 X9N N C8 SING N N 17 X9N N1 C10 SING N N 18 X9N N1 C9 SING N N 19 X9N C8 C9 SING N N 20 X9N C10 C11 SING N N 21 X9N C8 H2 SING N N 22 X9N C8 H3 SING N N 23 X9N C9 H4 SING N N 24 X9N C9 H5 SING N N 25 X9N C1 H6 SING N N 26 X9N C1 H7 SING N N 27 X9N C5 H8 SING N N 28 X9N C6 H9 SING N N 29 X9N C3 H10 SING N N 30 X9N C3 H11 SING N N 31 X9N C3 H12 SING N N 32 X9N C2 H13 SING N N 33 X9N C2 H14 SING N N 34 X9N C15 H15 SING N N 35 X9N C13 H16 SING N N 36 X9N C13 H17 SING N N 37 X9N C12 H18 SING N N 38 X9N C12 H19 SING N N 39 X9N C10 H20 SING N N 40 X9N C10 H21 SING N N 41 X9N C11 H22 SING N N 42 X9N C11 H23 SING N N 43 X9N C11 H24 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X9N SMILES ACDLabs 12.01 CCN1CCN(CC1)c1ccc(cc1F)C(=O)CCC X9N InChI InChI 1.06 InChI=1S/C16H23FN2O/c1-3-5-16(20)13-6-7-15(14(17)12-13)19-10-8-18(4-2)9-11-19/h6-7,12H,3-5,8-11H2,1-2H3 X9N InChIKey InChI 1.06 IYDDEPAMENQFDL-UHFFFAOYSA-N X9N SMILES_CANONICAL CACTVS 3.385 CCCC(=O)c1ccc(N2CCN(CC)CC2)c(F)c1 X9N SMILES CACTVS 3.385 CCCC(=O)c1ccc(N2CCN(CC)CC2)c(F)c1 X9N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCC(=O)c1ccc(c(c1)F)N2CCN(CC2)CC X9N SMILES "OpenEye OEToolkits" 2.0.7 CCCC(=O)c1ccc(c(c1)F)N2CCN(CC2)CC # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X9N "SYSTEMATIC NAME" ACDLabs 12.01 1-[4-(4-ethylpiperazin-1-yl)-3-fluorophenyl]butan-1-one X9N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-[4-(4-ethylpiperazin-1-yl)-3-fluoranyl-phenyl]butan-1-one # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X9N 'Create component' 2022-11-07 RCSB X9N 'Initial release' 2023-01-18 RCSB # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal X9N N1 N 5.598 4.875 1 X9N C7 C 5.598 0.375 2 X9N C8 C 4.299 2.625 3 X9N C9 C 4.299 4.125 4 X9N C1 C 6.897 -4.875 5 X9N C5 C 6.897 -1.875 6 X9N C6 C 6.897 -0.375 7 X9N C4 C 5.598 -2.625 8 X9N C3 C 8.196 -7.125 9 X9N C2 C 6.897 -6.375 10 X9N F F 3.000 0.375 11 X9N C14 C 4.299 -0.375 12 X9N C15 C 4.299 -1.875 13 X9N C C 5.598 -4.125 14 X9N O O 4.299 -4.875 15 X9N N N 5.598 1.875 16 X9N C13 C 6.897 2.625 17 X9N C12 C 6.897 4.125 18 X9N C10 C 5.598 6.375 19 X9N C11 C 6.897 7.125 20 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal X9N C3 C2 SINGLE NONE 1 X9N C2 C1 SINGLE NONE 2 X9N O C DOUBLE NONE 3 X9N C C1 SINGLE NONE 4 X9N C C4 SINGLE NONE 5 X9N C5 C4 DOUBLE NONE 6 X9N C5 C6 SINGLE NONE 7 X9N C4 C15 SINGLE NONE 8 X9N C6 C7 DOUBLE NONE 9 X9N C13 C12 SINGLE NONE 10 X9N C13 N SINGLE NONE 11 X9N C15 C14 DOUBLE NONE 12 X9N C7 C14 SINGLE NONE 13 X9N C7 N SINGLE NONE 14 X9N C12 N1 SINGLE NONE 15 X9N C14 F SINGLE NONE 16 X9N N C8 SINGLE NONE 17 X9N N1 C10 SINGLE NONE 18 X9N N1 C9 SINGLE NONE 19 X9N C8 C9 SINGLE NONE 20 X9N C10 C11 SINGLE NONE 21 # loop_ _pdbe_chem_comp_substructure.comp_id _pdbe_chem_comp_substructure.substructure_name _pdbe_chem_comp_substructure.id _pdbe_chem_comp_substructure.substructure_type _pdbe_chem_comp_substructure.substructure_smiles _pdbe_chem_comp_substructure.substructure_inchis _pdbe_chem_comp_substructure.substructure_inchikeys X9N MurckoScaffold S1 scaffold c1ccc(N2CCNCC2)cc1 InChI=1S/C10H14N2/c1-2-4-10(5-3-1)12-8-6-11-7-9-12/h1-5,11H,6-9H2 YZTJYBJCZXZGCT-UHFFFAOYSA-N X9N phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N X9N piperazine F2 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal X9N N1 S1 1 X9N C7 S1 1 X9N C8 S1 1 X9N C9 S1 1 X9N C5 S1 1 X9N C6 S1 1 X9N C4 S1 1 X9N C14 S1 1 X9N C15 S1 1 X9N N S1 1 X9N C13 S1 1 X9N C12 S1 1 X9N C7 F1 1 X9N C6 F1 1 X9N C5 F1 1 X9N C4 F1 1 X9N C15 F1 1 X9N C14 F1 1 X9N N1 F2 1 X9N C12 F2 1 X9N C13 F2 1 X9N N F2 1 X9N C8 F2 1 X9N C9 F2 1 # _pdbe_chem_comp_rdkit_properties.comp_id X9N _pdbe_chem_comp_rdkit_properties.exactmw 278.179 _pdbe_chem_comp_rdkit_properties.amw 278.371 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 3 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 0 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7 _pdbe_chem_comp_rdkit_properties.NumHBD 0 _pdbe_chem_comp_rdkit_properties.NumHBA 3 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20 _pdbe_chem_comp_rdkit_properties.NumAtoms 43 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 0 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.562 _pdbe_chem_comp_rdkit_properties.NumRings 2 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 152.236 _pdbe_chem_comp_rdkit_properties.tpsa 23.550 _pdbe_chem_comp_rdkit_properties.CrippenClogP 2.515 _pdbe_chem_comp_rdkit_properties.CrippenMR 78.876 _pdbe_chem_comp_rdkit_properties.chi0v 9.681 _pdbe_chem_comp_rdkit_properties.chi1v 4.985 _pdbe_chem_comp_rdkit_properties.chi2v 2.034 _pdbe_chem_comp_rdkit_properties.chi3v 2.034 _pdbe_chem_comp_rdkit_properties.chi4v 1.187 _pdbe_chem_comp_rdkit_properties.chi0n 32.681 _pdbe_chem_comp_rdkit_properties.chi1n 16.485 _pdbe_chem_comp_rdkit_properties.chi2n 2.034 _pdbe_chem_comp_rdkit_properties.chi3n 2.034 _pdbe_chem_comp_rdkit_properties.chi4n 1.187 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.420 _pdbe_chem_comp_rdkit_properties.kappa1 3.167 _pdbe_chem_comp_rdkit_properties.kappa2 6.840 _pdbe_chem_comp_rdkit_properties.kappa3 3.366 _pdbe_chem_comp_rdkit_properties.Phi 1.083 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id X9N UniChem PDBe X9N X9N UniChem ZINC ZINC000004168691 X9N UniChem eMolecules 2312942 X9N UniChem PubChem 976016 X9N UniChem Mcule MCULE-8822848232 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal X9N N1 -3.901 -0.038 -0.384 ETKDGv3 1 X9N C7 -0.052 -0.899 0.314 ETKDGv3 2 X9N C8 -2.358 -1.886 0.080 ETKDGv3 3 X9N C9 -3.820 -1.428 0.105 ETKDGv3 4 X9N C1 5.011 -0.107 -1.080 ETKDGv3 5 X9N C5 2.088 -2.083 0.445 ETKDGv3 6 X9N C6 0.631 -1.999 0.670 ETKDGv3 7 X9N C4 2.759 -1.064 -0.129 ETKDGv3 8 X9N C3 6.171 2.124 -0.877 ETKDGv3 9 X9N C2 5.403 1.035 -0.135 ETKDGv3 10 X9N F -0.004 1.326 -0.741 ETKDGv3 11 X9N C14 0.673 0.225 -0.328 ETKDGv3 12 X9N C15 1.994 0.148 -0.535 ETKDGv3 13 X9N C 4.230 -1.163 -0.346 ETKDGv3 14 X9N O 4.865 -2.148 0.121 ETKDGv3 15 X9N N -1.470 -0.813 0.540 ETKDGv3 16 X9N C13 -2.037 0.307 1.297 ETKDGv3 17 X9N C12 -3.249 0.911 0.558 ETKDGv3 18 X9N C10 -5.307 0.336 -0.644 ETKDGv3 19 X9N C11 -5.398 1.631 -1.450 ETKDGv3 20 X9N H2 -2.089 -2.157 -0.965 ETKDGv3 21 X9N H3 -2.238 -2.784 0.722 ETKDGv3 22 X9N H4 -4.405 -2.114 -0.547 ETKDGv3 23 X9N H5 -4.228 -1.503 1.139 ETKDGv3 24 X9N H6 5.934 -0.565 -1.499 ETKDGv3 25 X9N H7 4.426 0.277 -1.943 ETKDGv3 26 X9N H8 2.599 -2.986 0.754 ETKDGv3 27 X9N H9 0.128 -2.831 1.145 ETKDGv3 28 X9N H10 6.446 2.933 -0.168 ETKDGv3 29 X9N H11 7.101 1.708 -1.320 ETKDGv3 30 X9N H12 5.542 2.558 -1.684 ETKDGv3 31 X9N H13 4.494 1.484 0.320 ETKDGv3 32 X9N H14 6.042 0.637 0.683 ETKDGv3 33 X9N H15 2.488 0.986 -1.005 ETKDGv3 34 X9N H16 -2.366 -0.072 2.289 ETKDGv3 35 X9N H17 -1.277 1.096 1.489 ETKDGv3 36 X9N H18 -2.891 1.787 -0.025 ETKDGv3 37 X9N H19 -3.968 1.287 1.321 ETKDGv3 38 X9N H20 -5.879 0.438 0.306 ETKDGv3 39 X9N H21 -5.805 -0.454 -1.250 ETKDGv3 40 X9N H22 -4.768 1.559 -2.362 ETKDGv3 41 X9N H23 -6.451 1.805 -1.757 ETKDGv3 42 X9N H24 -5.068 2.497 -0.841 ETKDGv3 43 #