data_XDA
#
_chem_comp.id XDA
_chem_comp.name "4-{[2-(phosphonooxy)ethyl]carbamoyl}benzyl [(1R,6S)-6-(dimethylcarbamoyl)cyclohex-2-en-1-yl]carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H28 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-07
_chem_comp.pdbx_modified_date 2014-05-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 469.425
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XDA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4O5T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XDA O8 O8 O 0 1 N N N N N N -14.805 0.516 -23.068 4.596 -1.942 0.391 O8 XDA 1
XDA C7 C7 C 0 1 N N N N N N -14.162 1.094 -22.204 5.728 -1.983 -0.041 C7 XDA 2
XDA N9 N9 N 0 1 N N N N N N -13.334 2.100 -22.509 6.200 -3.122 -0.587 N9 XDA 3
XDA C11 C11 C 0 1 N N N N N N -13.085 2.509 -23.885 7.608 -3.216 -0.981 C11 XDA 4
XDA C10 C10 C 0 1 N N N N N N -12.589 2.929 -21.570 5.306 -4.265 -0.785 C10 XDA 5
XDA C4 C4 C 0 1 N N S N N N -14.275 0.641 -20.771 6.606 -0.760 0.027 C4 XDA 6
XDA C5 C5 C 0 1 N N N N N N -15.733 0.313 -20.428 6.881 -0.243 -1.391 C5 XDA 7
XDA C6 C6 C 0 1 N N N N N N -15.962 -1.136 -20.006 7.913 0.884 -1.303 C6 XDA 8
XDA C1 C1 C 0 1 N N N N N N -15.160 -2.082 -20.861 7.504 1.878 -0.257 C1 XDA 9
XDA C2 C2 C 0 1 N N N N N N -13.896 -1.787 -21.121 6.629 1.641 0.667 C2 XDA 10
XDA C3 C3 C 0 1 N N R N N N -13.300 -0.516 -20.571 5.893 0.342 0.814 C3 XDA 11
XDA N12 N12 N 0 1 N N N N N N -12.033 -0.240 -21.226 4.528 0.496 0.304 N12 XDA 12
XDA C13 C13 C 0 1 N N N N N N -11.125 0.617 -20.764 3.565 1.000 1.100 C13 XDA 13
XDA O14 O14 O 0 1 N N N N N N -11.262 1.237 -19.722 3.828 1.326 2.241 O14 XDA 14
XDA O15 O15 O 0 1 N N N N N N -9.937 0.841 -21.586 2.310 1.143 0.632 O15 XDA 15
XDA C16 C16 C 0 1 N N N N N N -9.001 1.893 -21.324 1.324 1.692 1.545 C16 XDA 16
XDA C17 C17 C 0 1 Y N N N N N -7.891 1.326 -20.480 -0.011 1.777 0.851 C17 XDA 17
XDA C22 C22 C 0 1 Y N N N N N -6.891 0.590 -21.093 -0.352 2.920 0.151 C22 XDA 18
XDA C21 C21 C 0 1 Y N N N N N -5.862 0.053 -20.328 -1.572 3.004 -0.487 C21 XDA 19
XDA C18 C18 C 0 1 Y N N N N N -7.873 1.521 -19.099 -0.888 0.708 0.912 C18 XDA 20
XDA C19 C19 C 0 1 Y N N N N N -6.843 0.975 -18.330 -2.111 0.779 0.278 C19 XDA 21
XDA C20 C20 C 0 1 Y N N N N N -5.828 0.248 -18.950 -2.464 1.932 -0.425 C20 XDA 22
XDA C23 C23 C 0 1 N N N N N N -4.706 -0.378 -18.174 -3.773 2.015 -1.106 C23 XDA 23
XDA O24 O24 O 0 1 N N N N N N -4.535 -1.567 -18.360 -4.076 3.019 -1.721 O24 XDA 24
XDA N25 N25 N 0 1 N N N N N N -3.906 0.268 -17.325 -4.632 0.978 -1.044 N25 XDA 25
XDA C26 C26 C 0 1 N N N N N N -3.947 1.686 -17.039 -5.930 1.060 -1.719 C26 XDA 26
XDA C27 C27 C 0 1 N N N N N N -2.523 2.209 -16.949 -6.705 -0.240 -1.494 C27 XDA 27
XDA O28 O28 O 0 1 N N N N N N -1.856 1.851 -18.157 -7.009 -0.379 -0.105 O28 XDA 28
XDA P29 P29 P 0 1 N N N N N N -0.539 2.629 -18.653 -7.820 -1.634 0.494 P29 XDA 29
XDA O31 O31 O 0 1 N N N N N N -0.821 4.087 -18.372 -6.952 -2.976 0.297 O31 XDA 30
XDA O30 O30 O 0 1 N N N N N N 0.555 2.017 -17.809 -8.094 -1.397 2.063 O30 XDA 31
XDA O32 O32 O 0 1 N N N N N N -0.431 2.298 -20.122 -9.111 -1.772 -0.217 O32 XDA 32
XDA H11B H11B H 0 0 N N N N N N -12.376 3.350 -23.896 8.210 -3.493 -0.116 H11B XDA 33
XDA H11A H11A H 0 0 N N N N N N -12.660 1.664 -24.447 7.718 -3.973 -1.758 H11A XDA 34
XDA H11C H11C H 0 0 N N N N N N -14.031 2.821 -24.351 7.944 -2.252 -1.364 H11C XDA 35
XDA H10C H10C H 0 0 N N N N N N -12.797 2.597 -20.542 4.845 -4.198 -1.771 H10C XDA 36
XDA H10B H10B H 0 0 N N N N N N -11.512 2.837 -21.774 5.877 -5.190 -0.713 H10B XDA 37
XDA H10A H10A H 0 0 N N N N N N -12.896 3.979 -21.685 4.530 -4.256 -0.020 H10A XDA 38
XDA H4 H4 H 0 1 N N N N N N -13.954 1.470 -20.123 7.547 -1.011 0.518 H4 XDA 39
XDA H5A H5A H 0 1 N N N N N N -16.050 0.968 -19.603 7.274 -1.053 -2.006 H5A XDA 40
XDA H5B H5B H 0 1 N N N N N N -16.351 0.516 -21.315 5.958 0.138 -1.827 H5B XDA 41
XDA H6B H6B H 0 1 N N N N N N -17.031 -1.376 -20.110 8.885 0.464 -1.043 H6B XDA 42
XDA H6A H6A H 0 1 N N N N N N -15.659 -1.257 -18.955 7.983 1.385 -2.268 H6A XDA 43
XDA H1 H1 H 0 1 N N N N N N -15.607 -2.983 -21.254 7.970 2.852 -0.275 H1 XDA 44
XDA H2 H2 H 0 1 N N N N N N -13.295 -2.453 -21.723 6.415 2.427 1.376 H2 XDA 45
XDA H3 H3 H 0 1 N N N N N N -13.132 -0.645 -19.492 5.854 0.066 1.868 H3 XDA 46
XDA H12 H12 H 0 1 N N N N N N -11.830 -0.724 -22.077 4.318 0.236 -0.606 H12 XDA 47
XDA H16A H16A H 0 0 N N N N N N -8.592 2.274 -22.272 1.239 1.046 2.419 H16A XDA 48
XDA H16B H16B H 0 0 N N N N N N -9.500 2.711 -20.784 1.634 2.689 1.859 H16B XDA 49
XDA H22 H22 H 0 1 N N N N N N -6.910 0.434 -22.161 0.339 3.749 0.104 H22 XDA 50
XDA H21 H21 H 0 1 N N N N N N -5.082 -0.520 -20.807 -1.838 3.898 -1.032 H21 XDA 51
XDA H18 H18 H 0 1 N N N N N N -8.656 2.094 -18.624 -0.614 -0.184 1.456 H18 XDA 52
XDA H19 H19 H 0 1 N N N N N N -6.833 1.115 -17.259 -2.795 -0.056 0.326 H19 XDA 53
XDA H25 H25 H 0 1 N N N N N N -3.218 -0.275 -16.844 -4.391 0.177 -0.553 H25 XDA 54
XDA H26A H26A H 0 0 N N N N N N -4.483 2.210 -17.844 -6.498 1.897 -1.313 H26A XDA 55
XDA H26B H26B H 0 0 N N N N N N -4.464 1.856 -16.083 -5.775 1.211 -2.787 H26B XDA 56
XDA H27A H27A H 0 0 N N N N N N -2.010 1.755 -16.088 -7.631 -0.214 -2.068 H27A XDA 57
XDA H27B H27B H 0 0 N N N N N N -2.532 3.303 -16.835 -6.099 -1.085 -1.819 H27B XDA 58
XDA H5 H5 H 0 1 N N N N N N -0.884 4.562 -19.193 -6.091 -2.956 0.737 H5 XDA 59
XDA H6 H6 H 0 1 N N N N N N 1.140 1.514 -18.364 -8.579 -2.116 2.490 H6 XDA 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XDA C11 N9 SING N N 1
XDA O8 C7 DOUB N N 2
XDA N9 C7 SING N N 3
XDA N9 C10 SING N N 4
XDA C7 C4 SING N N 5
XDA O15 C16 SING N N 6
XDA O15 C13 SING N N 7
XDA C16 C17 SING N N 8
XDA N12 C13 SING N N 9
XDA N12 C3 SING N N 10
XDA C2 C1 DOUB N N 11
XDA C2 C3 SING N N 12
XDA C22 C17 DOUB Y N 13
XDA C22 C21 SING Y N 14
XDA C1 C6 SING N N 15
XDA C4 C3 SING N N 16
XDA C4 C5 SING N N 17
XDA C13 O14 DOUB N N 18
XDA C17 C18 SING Y N 19
XDA C5 C6 SING N N 20
XDA C21 C20 DOUB Y N 21
XDA O32 P29 DOUB N N 22
XDA C18 C19 DOUB Y N 23
XDA C20 C19 SING Y N 24
XDA C20 C23 SING N N 25
XDA P29 O31 SING N N 26
XDA P29 O28 SING N N 27
XDA P29 O30 SING N N 28
XDA O24 C23 DOUB N N 29
XDA C23 N25 SING N N 30
XDA O28 C27 SING N N 31
XDA N25 C26 SING N N 32
XDA C26 C27 SING N N 33
XDA C11 H11B SING N N 34
XDA C11 H11A SING N N 35
XDA C11 H11C SING N N 36
XDA C10 H10C SING N N 37
XDA C10 H10B SING N N 38
XDA C10 H10A SING N N 39
XDA C4 H4 SING N N 40
XDA C5 H5A SING N N 41
XDA C5 H5B SING N N 42
XDA C6 H6B SING N N 43
XDA C6 H6A SING N N 44
XDA C1 H1 SING N N 45
XDA C2 H2 SING N N 46
XDA C3 H3 SING N N 47
XDA N12 H12 SING N N 48
XDA C16 H16A SING N N 49
XDA C16 H16B SING N N 50
XDA C22 H22 SING N N 51
XDA C21 H21 SING N N 52
XDA C18 H18 SING N N 53
XDA C19 H19 SING N N 54
XDA N25 H25 SING N N 55
XDA C26 H26A SING N N 56
XDA C26 H26B SING N N 57
XDA C27 H27A SING N N 58
XDA C27 H27B SING N N 59
XDA O31 H5 SING N N 60
XDA O30 H6 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XDA SMILES ACDLabs 12.01 O=P(O)(O)OCCNC(=O)c1ccc(cc1)COC(=O)NC2C=CCCC2C(=O)N(C)C
XDA InChI InChI 1.03 InChI=1S/C20H28N3O8P/c1-23(2)19(25)16-5-3-4-6-17(16)22-20(26)30-13-14-7-9-15(10-8-14)18(24)21-11-12-31-32(27,28)29/h4,6-10,16-17H,3,5,11-13H2,1-2H3,(H,21,24)(H,22,26)(H2,27,28,29)/t16-,17+/m0/s1
XDA InChIKey InChI 1.03 MBWSSOJOAZHENI-DLBZAZTESA-N
XDA SMILES_CANONICAL CACTVS 3.385 CN(C)C(=O)[C@H]1CCC=C[C@H]1NC(=O)OCc2ccc(cc2)C(=O)NCCO[P](O)(O)=O
XDA SMILES CACTVS 3.385 CN(C)C(=O)[CH]1CCC=C[CH]1NC(=O)OCc2ccc(cc2)C(=O)NCCO[P](O)(O)=O
XDA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CN(C)C(=O)[C@H]1CCC=C[C@H]1NC(=O)OCc2ccc(cc2)C(=O)NCCOP(=O)(O)O
XDA SMILES "OpenEye OEToolkits" 1.7.6 CN(C)C(=O)C1CCC=CC1NC(=O)OCc2ccc(cc2)C(=O)NCCOP(=O)(O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XDA "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[2-(phosphonooxy)ethyl]carbamoyl}benzyl [(1R,6S)-6-(dimethylcarbamoyl)cyclohex-2-en-1-yl]carbamate"
XDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[4-(2-phosphonooxyethylcarbamoyl)phenyl]methyl N-[(1R,6S)-6-(dimethylcarbamoyl)cyclohex-2-en-1-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XDA 'Create component' 2014-01-07 PDBJ
XDA 'Initial release' 2014-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XDA O8 O 5.598 -5.715 1
XDA C7 C 5.598 -7.215 2
XDA N9 N 4.299 -7.965 3
XDA C11 C 3.000 -7.215 4
XDA C10 C 4.299 -9.465 5
XDA C4 C 6.897 -7.965 6
XDA C5 C 6.897 -9.465 7
XDA C6 C 8.196 -10.215 8
XDA C1 C 9.495 -9.465 9
XDA C2 C 9.495 -7.965 10
XDA C3 C 8.196 -7.215 11
XDA N12 N 8.196 -5.715 12
XDA C13 C 9.495 -4.965 13
XDA O14 O 10.794 -5.715 14
XDA O15 O 9.495 -3.465 15
XDA C16 C 10.794 -2.715 16
XDA C17 C 10.794 -1.215 17
XDA C22 C 12.093 -0.465 18
XDA C21 C 12.093 1.035 19
XDA C18 C 9.495 -0.465 20
XDA C19 C 9.495 1.035 21
XDA C20 C 10.794 1.785 22
XDA C23 C 10.794 3.285 23
XDA O24 O 9.495 4.035 24
XDA N25 N 12.093 4.035 25
XDA C26 C 12.093 5.535 26
XDA C27 C 13.392 6.285 27
XDA O28 O 13.392 7.785 28
XDA P29 P 14.691 8.535 29
XDA O31 O 13.941 9.834 30
XDA O30 O 15.441 7.236 31
XDA O32 O 15.990 9.285 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XDA C11 N9 SINGLE NONE 1
XDA O8 C7 DOUBLE NONE 2
XDA N9 C7 SINGLE NONE 3
XDA N9 C10 SINGLE NONE 4
XDA C4 C7 SINGLE BEGINDASH 5
XDA O15 C16 SINGLE NONE 6
XDA O15 C13 SINGLE NONE 7
XDA C16 C17 SINGLE NONE 8
XDA N12 C13 SINGLE NONE 9
XDA C3 N12 SINGLE BEGINDASH 10
XDA C2 C1 DOUBLE NONE 11
XDA C2 C3 SINGLE NONE 12
XDA C22 C17 DOUBLE NONE 13
XDA C22 C21 SINGLE NONE 14
XDA C1 C6 SINGLE NONE 15
XDA C4 C3 SINGLE NONE 16
XDA C4 C5 SINGLE NONE 17
XDA C13 O14 DOUBLE NONE 18
XDA C17 C18 SINGLE NONE 19
XDA C5 C6 SINGLE NONE 20
XDA C21 C20 DOUBLE NONE 21
XDA O32 P29 DOUBLE NONE 22
XDA C18 C19 DOUBLE NONE 23
XDA C20 C19 SINGLE NONE 24
XDA C20 C23 SINGLE NONE 25
XDA P29 O31 SINGLE NONE 26
XDA P29 O28 SINGLE NONE 27
XDA P29 O30 SINGLE NONE 28
XDA O24 C23 DOUBLE NONE 29
XDA C23 N25 SINGLE NONE 30
XDA O28 C27 SINGLE NONE 31
XDA N25 C26 SINGLE NONE 32
XDA C26 C27 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XDA MurckoScaffold S1 scaffold 'O=C(N[C@@H]1C=CCCC1)OCc1ccccc1' InChI=1S/C14H17NO2/c16-14(15-13-9-5-2-6-10-13)17-11-12-7-3-1-4-8-12/h1,3-5,7-9,13H,2,6,10-11H2,(H,15,16)/t13-/m1/s1 BFBDOBJZUPOVMQ-CYBMUJFWSA-N
XDA amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
XDA phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XDA phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XDA C4 S1 1
XDA C5 S1 1
XDA C6 S1 1
XDA C1 S1 1
XDA C2 S1 1
XDA C3 S1 1
XDA N12 S1 1
XDA C13 S1 1
XDA O14 S1 1
XDA O15 S1 1
XDA C16 S1 1
XDA C17 S1 1
XDA C22 S1 1
XDA C21 S1 1
XDA C18 S1 1
XDA C19 S1 1
XDA C20 S1 1
XDA N9 F1 1
XDA C7 F1 1
XDA O8 F1 1
XDA C4 F1 1
XDA N25 F1 2
XDA C23 F1 2
XDA O24 F1 2
XDA C20 F1 2
XDA C17 F2 1
XDA C22 F2 1
XDA C21 F2 1
XDA C20 F2 1
XDA C19 F2 1
XDA C18 F2 1
XDA O28 F3 1
XDA P29 F3 1
XDA O32 F3 1
XDA O31 F3 1
XDA O30 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XDA
_pdbe_chem_comp_rdkit_properties.exactmw 469.161
_pdbe_chem_comp_rdkit_properties.amw 469.431
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.450
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 225.183
_pdbe_chem_comp_rdkit_properties.tpsa 154.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.065
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.906
_pdbe_chem_comp_rdkit_properties.chi0v 15.949
_pdbe_chem_comp_rdkit_properties.chi1v 8.981
_pdbe_chem_comp_rdkit_properties.chi2v 3.042
_pdbe_chem_comp_rdkit_properties.chi3v 3.042
_pdbe_chem_comp_rdkit_properties.chi4v 1.694
_pdbe_chem_comp_rdkit_properties.chi0n 43.055
_pdbe_chem_comp_rdkit_properties.chi1n 21.231
_pdbe_chem_comp_rdkit_properties.chi2n 2.728
_pdbe_chem_comp_rdkit_properties.chi3n 2.728
_pdbe_chem_comp_rdkit_properties.chi4n 1.541
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.720
_pdbe_chem_comp_rdkit_properties.kappa1 6.894
_pdbe_chem_comp_rdkit_properties.kappa2 11.773
_pdbe_chem_comp_rdkit_properties.kappa3 8.428
_pdbe_chem_comp_rdkit_properties.Phi 2.537
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XDA UniChem ZINC ZINC000098209607
XDA UniChem PubChem 74049865
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XDA O8 -3.177 0.153 0.410 ETKDGv3 1
XDA C7 -2.033 0.109 0.943 ETKDGv3 2
XDA N9 -0.892 0.617 0.212 ETKDGv3 3
XDA C11 -1.062 0.990 -1.195 ETKDGv3 4
XDA C10 0.411 0.797 0.861 ETKDGv3 5
XDA C4 -1.915 -0.412 2.367 ETKDGv3 6
XDA C5 -2.225 0.744 3.374 ETKDGv3 7
XDA C6 -3.178 0.334 4.508 ETKDGv3 8
XDA C1 -4.373 -0.376 3.937 ETKDGv3 9
XDA C2 -4.190 -1.330 3.017 ETKDGv3 10
XDA C3 -2.781 -1.695 2.607 ETKDGv3 11
XDA N12 -2.787 -2.583 1.437 ETKDGv3 12
XDA C13 -1.616 -3.278 0.995 ETKDGv3 13
XDA O14 -0.543 -3.202 1.654 ETKDGv3 14
XDA O15 -1.675 -4.036 -0.179 ETKDGv3 15
XDA C16 -0.518 -4.548 -0.837 ETKDGv3 16
XDA C17 0.199 -3.432 -1.545 ETKDGv3 17
XDA C22 -0.265 -2.960 -2.714 ETKDGv3 18
XDA C21 0.386 -1.805 -3.364 ETKDGv3 19
XDA C18 1.370 -2.782 -0.913 ETKDGv3 20
XDA C19 1.953 -1.727 -1.495 ETKDGv3 21
XDA C20 1.432 -1.191 -2.780 ETKDGv3 22
XDA C23 2.034 0.013 -3.399 ETKDGv3 23
XDA O24 1.964 0.173 -4.649 ETKDGv3 24
XDA N25 2.656 1.020 -2.588 ETKDGv3 25
XDA C26 3.151 2.271 -3.163 ETKDGv3 26
XDA C27 3.501 3.273 -2.064 ETKDGv3 27
XDA O28 2.332 3.595 -1.347 ETKDGv3 28
XDA P29 2.761 4.466 0.056 ETKDGv3 29
XDA O31 4.079 5.492 -0.235 ETKDGv3 30
XDA O30 3.133 3.386 1.306 ETKDGv3 31
XDA O32 1.579 5.307 0.481 ETKDGv3 32
XDA H11B -1.412 0.110 -1.775 ETKDGv3 33
XDA H11A -1.812 1.805 -1.279 ETKDGv3 34
XDA H11C -0.113 1.345 -1.647 ETKDGv3 35
XDA H10C 0.863 -0.193 1.081 ETKDGv3 36
XDA H10B 0.291 1.376 1.800 ETKDGv3 37
XDA H10A 1.115 1.361 0.216 ETKDGv3 38
XDA H4 -0.868 -0.730 2.545 ETKDGv3 39
XDA H5A -1.277 1.112 3.822 ETKDGv3 40
XDA H5B -2.684 1.612 2.849 ETKDGv3 41
XDA H6B -3.506 1.231 5.075 ETKDGv3 42
XDA H6A -2.649 -0.348 5.209 ETKDGv3 43
XDA H1 -5.377 -0.080 4.226 ETKDGv3 44
XDA H2 -5.050 -1.824 2.575 ETKDGv3 45
XDA H3 -2.342 -2.254 3.464 ETKDGv3 46
XDA H12 -3.655 -2.689 0.866 ETKDGv3 47
XDA H16A -0.837 -5.314 -1.575 ETKDGv3 48
XDA H16B 0.150 -5.054 -0.107 ETKDGv3 49
XDA H22 -1.136 -3.403 -3.180 ETKDGv3 50
XDA H21 -0.026 -1.436 -4.295 ETKDGv3 51
XDA H18 1.763 -3.160 0.022 ETKDGv3 52
XDA H19 2.823 -1.287 -1.025 ETKDGv3 53
XDA H25 2.669 0.901 -1.551 ETKDGv3 54
XDA H26A 2.372 2.716 -3.820 ETKDGv3 55
XDA H26B 4.055 2.061 -3.775 ETKDGv3 56
XDA H27A 4.279 2.812 -1.412 ETKDGv3 57
XDA H27B 3.916 4.187 -2.543 ETKDGv3 58
XDA H5 4.880 4.945 -0.037 ETKDGv3 59
XDA H6 3.858 2.815 0.949 ETKDGv3 60
#