data_XDH
#
_chem_comp.id XDH
_chem_comp.name "4,4'-propane-2,2-diylbis(2,6-dichlorophenol)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H12 Cl4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-09-10
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 366.067
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XDH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3OSI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XDH CAA CAA C 0 1 N N N N N N 15.744 16.329 9.858 0.150 1.358 2.714 CAA XDH 1
XDH CAB CAB C 0 1 N N N N N N 17.278 18.190 9.852 -0.134 -1.122 2.823 CAB XDH 2
XDH OAC OAC O 0 1 N N N N N N 16.751 17.180 16.015 -4.569 0.456 -1.381 OAC XDH 3
XDH OAD OAD O 0 1 N N N N N N 11.755 21.177 9.151 4.575 -0.593 -1.342 OAD XDH 4
XDH CLAE CLAE CL 0 0 N N N N N N 13.928 17.324 15.200 -4.714 -1.712 0.624 CLAE XDH 5
XDH CLAF CLAF CL 0 0 N N N N N N 19.261 17.256 14.482 -2.502 2.480 -1.990 CLAF XDH 6
XDH CLAG CLAG CL 0 0 N N N N N N 14.381 22.488 9.695 4.761 1.694 0.521 CLAG XDH 7
XDH CLAH CLAH CL 0 0 N N N N N N 10.941 18.388 9.116 2.450 -2.581 -1.860 CLAH XDH 8
XDH CAI CAI C 0 1 Y N N N N N 15.105 17.498 12.763 -2.268 -0.700 1.193 CAI XDH 9
XDH CAJ CAJ C 0 1 Y N N N N N 17.492 17.477 12.440 -1.289 1.155 0.035 CAJ XDH 10
XDH CAK CAK C 0 1 Y N N N N N 15.089 19.940 10.067 2.296 0.769 1.149 CAK XDH 11
XDH CAL CAL C 0 1 Y N N N N N 13.596 18.069 9.814 1.276 -1.129 0.100 CAL XDH 12
XDH CAM CAM C 0 1 Y N N N N N 16.574 17.306 14.656 -3.464 0.364 -0.593 CAM XDH 13
XDH CAN CAN C 0 1 Y N N N N N 12.789 20.316 9.458 3.473 -0.432 -0.562 CAN XDH 14
XDH CAO CAO C 0 1 Y N N N N N 15.290 17.381 14.134 -3.393 -0.609 0.394 CAO XDH 15
XDH CAP CAP C 0 1 Y N N N N N 17.675 17.353 13.812 -2.411 1.251 -0.767 CAP XDH 16
XDH CAQ CAQ C 0 1 Y N N N N N 14.058 20.802 9.744 3.419 0.605 0.360 CAQ XDH 17
XDH CAR CAR C 0 1 Y N N N N N 12.550 18.948 9.490 2.394 -1.295 -0.695 CAR XDH 18
XDH CAS CAS C 0 1 Y N N N N N 16.206 17.550 11.916 -1.218 0.181 1.013 CAS XDH 19
XDH CAT CAT C 0 1 Y N N N N N 14.864 18.572 10.105 1.227 -0.099 1.021 CAT XDH 20
XDH CAU CAU C 0 1 N N N N N N 16.010 17.671 10.442 0.006 0.079 1.886 CAU XDH 21
XDH HAA HAA H 0 1 N N N N N N 14.812 15.924 10.278 1.035 1.285 3.345 HAA XDH 22
XDH HAAA HAAA H 0 0 N N N N N N 15.646 16.417 8.766 0.250 2.214 2.046 HAAA XDH 23
XDH HAAB HAAB H 0 0 N N N N N N 16.578 15.653 10.098 -0.733 1.487 3.340 HAAB XDH 24
XDH HAB HAB H 0 1 N N N N N N 17.497 19.184 10.269 -1.017 -0.993 3.450 HAB XDH 25
XDH HABA HABA H 0 0 N N N N N N 18.102 17.502 10.092 -0.236 -2.033 2.234 HABA XDH 26
XDH HABB HABB H 0 0 N N N N N N 17.170 18.266 8.760 0.752 -1.195 3.455 HABB XDH 27
XDH HOAC HOAC H 0 0 N N N N N N 15.904 17.163 16.445 -5.254 1.041 -1.031 HOAC XDH 28
XDH HOAD HOAD H 0 0 N N N N N N 12.072 22.072 9.169 4.540 -0.104 -2.176 HOAD XDH 29
XDH HAI HAI H 0 1 N N N N N N 14.106 17.549 12.355 -2.212 -1.457 1.961 HAI XDH 30
XDH HAJ HAJ H 0 1 N N N N N N 18.347 17.517 11.782 -0.469 1.845 -0.100 HAJ XDH 31
XDH HAK HAK H 0 1 N N N N N N 16.070 20.332 10.290 2.255 1.572 1.869 HAK XDH 32
XDH HAL HAL H 0 1 N N N N N N 13.419 17.004 9.838 0.440 -1.806 0.003 HAL XDH 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XDH CAA CAU SING N N 1
XDH CAA HAA SING N N 2
XDH CAA HAAA SING N N 3
XDH CAA HAAB SING N N 4
XDH CAB CAU SING N N 5
XDH CAB HAB SING N N 6
XDH CAB HABA SING N N 7
XDH CAB HABB SING N N 8
XDH CAM OAC SING N N 9
XDH OAC HOAC SING N N 10
XDH OAD CAN SING N N 11
XDH OAD HOAD SING N N 12
XDH CAO CLAE SING N N 13
XDH CAP CLAF SING N N 14
XDH CLAG CAQ SING N N 15
XDH CLAH CAR SING N N 16
XDH CAS CAI DOUB Y N 17
XDH CAI CAO SING Y N 18
XDH CAI HAI SING N N 19
XDH CAS CAJ SING Y N 20
XDH CAJ CAP DOUB Y N 21
XDH CAJ HAJ SING N N 22
XDH CAQ CAK DOUB Y N 23
XDH CAK CAT SING Y N 24
XDH CAK HAK SING N N 25
XDH CAR CAL SING Y N 26
XDH CAL CAT DOUB Y N 27
XDH CAL HAL SING N N 28
XDH CAP CAM SING Y N 29
XDH CAO CAM DOUB Y N 30
XDH CAN CAR DOUB Y N 31
XDH CAN CAQ SING Y N 32
XDH CAU CAS SING N N 33
XDH CAT CAU SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XDH SMILES ACDLabs 12.01 Clc1cc(cc(Cl)c1O)C(c2cc(Cl)c(O)c(Cl)c2)(C)C
XDH SMILES_CANONICAL CACTVS 3.370 CC(C)(c1cc(Cl)c(O)c(Cl)c1)c2cc(Cl)c(O)c(Cl)c2
XDH SMILES CACTVS 3.370 CC(C)(c1cc(Cl)c(O)c(Cl)c1)c2cc(Cl)c(O)c(Cl)c2
XDH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC(C)(c1cc(c(c(c1)Cl)O)Cl)c2cc(c(c(c2)Cl)O)Cl
XDH SMILES "OpenEye OEToolkits" 1.7.0 CC(C)(c1cc(c(c(c1)Cl)O)Cl)c2cc(c(c(c2)Cl)O)Cl
XDH InChI InChI 1.03 InChI=1S/C15H12Cl4O2/c1-15(2,7-3-9(16)13(20)10(17)4-7)8-5-11(18)14(21)12(19)6-8/h3-6,20-21H,1-2H3
XDH InChIKey InChI 1.03 KYPYTERUKNKOLP-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XDH "SYSTEMATIC NAME" ACDLabs 12.01 "4,4'-propane-2,2-diylbis(2,6-dichlorophenol)"
XDH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 2,6-dichloro-4-[2-(3,5-dichloro-4-hydroxy-phenyl)propan-2-yl]phenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XDH 'Create component' 2010-09-10 RCSB
XDH 'Modify aromatic_flag' 2011-06-04 RCSB
XDH 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XDH CAA C 7.098 0.000 1
XDH CAB C 4.098 0.000 2
XDH OAC O 5.598 -6.000 3
XDH OAD O 5.598 6.000 4
XDH CLAE Cl 8.196 -4.500 5
XDH CLAF Cl 3.000 -4.500 6
XDH CLAG Cl 8.196 4.500 7
XDH CLAH Cl 3.000 4.500 8
XDH CAI C 6.897 -2.250 9
XDH CAJ C 4.299 -2.250 10
XDH CAK C 6.897 2.250 11
XDH CAL C 4.299 2.250 12
XDH CAM C 5.598 -4.500 13
XDH CAN C 5.598 4.500 14
XDH CAO C 6.897 -3.750 15
XDH CAP C 4.299 -3.750 16
XDH CAQ C 6.897 3.750 17
XDH CAR C 4.299 3.750 18
XDH CAS C 5.598 -1.500 19
XDH CAT C 5.598 1.500 20
XDH CAU C 5.598 0.000 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XDH CAA CAU SINGLE NONE 1
XDH CAB CAU SINGLE NONE 2
XDH CAM OAC SINGLE NONE 3
XDH OAD CAN SINGLE NONE 4
XDH CAO CLAE SINGLE NONE 5
XDH CAP CLAF SINGLE NONE 6
XDH CLAG CAQ SINGLE NONE 7
XDH CLAH CAR SINGLE NONE 8
XDH CAS CAI DOUBLE NONE 9
XDH CAI CAO SINGLE NONE 10
XDH CAS CAJ SINGLE NONE 11
XDH CAJ CAP DOUBLE NONE 12
XDH CAQ CAK DOUBLE NONE 13
XDH CAK CAT SINGLE NONE 14
XDH CAR CAL SINGLE NONE 15
XDH CAL CAT DOUBLE NONE 16
XDH CAP CAM SINGLE NONE 17
XDH CAO CAM DOUBLE NONE 18
XDH CAN CAR DOUBLE NONE 19
XDH CAN CAQ SINGLE NONE 20
XDH CAU CAS SINGLE NONE 21
XDH CAT CAU SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XDH MurckoScaffold S1 scaffold c1ccc(Cc2ccccc2)cc1 InChI=1S/C13H12/c1-3-7-12(8-4-1)11-13-9-5-2-6-10-13/h1-10H,11H2 CZZYITDELCSZES-UHFFFAOYSA-N
XDH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XDH CAI S1 1
XDH CAJ S1 1
XDH CAK S1 1
XDH CAL S1 1
XDH CAM S1 1
XDH CAN S1 1
XDH CAO S1 1
XDH CAP S1 1
XDH CAQ S1 1
XDH CAR S1 1
XDH CAS S1 1
XDH CAT S1 1
XDH CAU S1 1
XDH CAI F1 1
XDH CAS F1 1
XDH CAJ F1 1
XDH CAP F1 1
XDH CAM F1 1
XDH CAO F1 1
XDH CAK F1 2
XDH CAQ F1 2
XDH CAN F1 2
XDH CAR F1 2
XDH CAL F1 2
XDH CAT F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id XDH
_pdbe_chem_comp_rdkit_properties.exactmw 363.959
_pdbe_chem_comp_rdkit_properties.amw 366.071
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 159.418
_pdbe_chem_comp_rdkit_properties.tpsa 40.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.003
_pdbe_chem_comp_rdkit_properties.CrippenMR 86.630
_pdbe_chem_comp_rdkit_properties.chi0v 12.852
_pdbe_chem_comp_rdkit_properties.chi1v 6.676
_pdbe_chem_comp_rdkit_properties.chi2v 3.551
_pdbe_chem_comp_rdkit_properties.chi3v 3.551
_pdbe_chem_comp_rdkit_properties.chi4v 2.274
_pdbe_chem_comp_rdkit_properties.chi0n 21.828
_pdbe_chem_comp_rdkit_properties.chi1n 10.981
_pdbe_chem_comp_rdkit_properties.chi2n 2.486
_pdbe_chem_comp_rdkit_properties.chi3n 2.486
_pdbe_chem_comp_rdkit_properties.chi4n 1.421
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.800
_pdbe_chem_comp_rdkit_properties.kappa1 6.756
_pdbe_chem_comp_rdkit_properties.kappa2 5.770
_pdbe_chem_comp_rdkit_properties.kappa3 3.044
_pdbe_chem_comp_rdkit_properties.Phi 1.856
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XDH UniChem ChEMBL CHEMBL1738928
XDH UniChem PDBe XDH
XDH UniChem 'KEGG LIGAND' C14528
XDH UniChem ChEBI 35004
XDH UniChem ZINC ZINC000001769017
XDH UniChem NMRShiftDB 20040791
XDH UniChem BRENDA 114899
XDH UniChem BRENDA 155603
XDH UniChem eMolecules 3715565
XDH UniChem fdasrs FO0P9ET4BN
XDH UniChem SureChEMBL SCHEMBL19109
XDH UniChem HMDB HMDB0258870
XDH UniChem 'PubChem TPHARMA' 16075615
XDH UniChem PubChem 6619
XDH UniChem Mcule MCULE-9712189971
XDH UniChem ACTor 27360-90-3
XDH UniChem ACTor 79-95-8
XDH UniChem ACTor 84-13-9
XDH UniChem Nikkaji J53.760H
XDH UniChem 'EPA CompTox Dashboard' DTXSID3021770
XDH UniChem BRENDA 39951
XDH UniChem BRENDA 52232
XDH UniChem ChemicalBook CB1304077
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XDH CAA 0.120 1.273 -2.129 ETKDGv3 1
XDH CAB -0.002 -1.224 -2.199 ETKDGv3 2
XDH OAC -4.669 -0.480 2.074 ETKDGv3 3
XDH OAD 4.667 0.244 2.220 ETKDGv3 4
XDH CLAE -4.866 1.666 -0.059 ETKDGv3 5
XDH CLAF -2.426 -2.431 2.730 ETKDGv3 6
XDH CLAG 2.352 2.220 2.935 ETKDGv3 7
XDH CLAH 4.920 -1.722 0.043 ETKDGv3 8
XDH CAI -2.309 0.713 -0.588 ETKDGv3 9
XDH CAJ -1.297 -1.094 0.696 ETKDGv3 10
XDH CAK 1.316 0.985 0.798 ETKDGv3 11
XDH CAL 2.372 -0.752 -0.547 ETKDGv3 12
XDH CAM -3.553 -0.331 1.247 ETKDGv3 13
XDH CAN 3.553 0.186 1.382 ETKDGv3 14
XDH CAO -3.513 0.588 0.262 ETKDGv3 15
XDH CAP -2.386 -1.214 1.464 ETKDGv3 16
XDH CAQ 2.377 1.063 1.611 ETKDGv3 17
XDH CAR 3.544 -0.673 0.351 ETKDGv3 18
XDH CAS -1.224 -0.067 -0.381 ETKDGv3 19
XDH CAT 1.281 0.018 -0.335 ETKDGv3 20
XDH CAU 0.044 -0.000 -1.252 ETKDGv3 21
XDH HAA 0.012 2.190 -1.510 ETKDGv3 22
XDH HAAA -0.668 1.273 -2.913 ETKDGv3 23
XDH HAAB 1.102 1.325 -2.650 ETKDGv3 24
XDH HAB 0.085 -2.173 -1.628 ETKDGv3 25
XDH HABA 0.813 -1.182 -2.954 ETKDGv3 26
XDH HABB -0.964 -1.246 -2.756 ETKDGv3 27
XDH HOAC -5.503 0.086 1.987 ETKDGv3 28
XDH HOAD 4.718 0.875 3.010 ETKDGv3 29
XDH HAI -2.336 1.451 -1.375 ETKDGv3 30
XDH HAJ -0.456 -1.756 0.864 ETKDGv3 31
XDH HAK 0.468 1.637 0.970 ETKDGv3 32
XDH HAL 2.428 -1.447 -1.371 ETKDGv3 33
#