data_XIP
#
_chem_comp.id XIP
_chem_comp.name "4-(4-aminostyryl)benzoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H13 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "4-[2-(4-aminophenyl)ethenyl]benzoic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-11-02
_chem_comp.pdbx_modified_date 2024-03-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 239.269
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XIP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8R1P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XIP C1 C1 C 0 1 Y N N N N N -140.425 2.558 -1.828 -3.636 0.876 -0.607 C1 XIP 1
XIP C3 C2 C 0 1 Y N N N N N -141.615 1.183 -0.227 -2.283 -1.008 0.020 C3 XIP 2
XIP C4 C3 C 0 1 N N N N N N -141.854 0.730 1.151 -1.941 -2.433 -0.121 C4 XIP 3
XIP C6 C4 C 0 1 Y N N N N N -139.906 1.446 2.652 0.420 -1.816 -0.104 C6 XIP 4
XIP C13 C5 C 0 1 Y N N N N N -142.476 0.791 -1.256 -1.574 -0.202 0.916 C13 XIP 5
XIP C14 C6 C 0 1 Y N N N N N -142.327 1.277 -2.545 -1.904 1.128 1.054 C14 XIP 6
XIP N N1 N 0 1 N N N N N N -141.111 2.623 -4.147 -3.255 3.023 0.423 N XIP 7
XIP C C7 C 0 1 Y N N N N N -141.289 2.162 -2.856 -2.931 1.673 0.290 C XIP 8
XIP O O1 O 0 1 N N N N N N -136.051 3.510 4.974 4.624 0.895 0.578 O XIP 9
XIP C10 C8 C 0 1 N N N N N N -136.017 2.834 3.864 3.520 1.073 -0.174 C10 XIP 10
XIP C11 C9 C 0 1 Y N N N N N -137.525 1.629 2.249 1.296 0.254 -0.930 C11 XIP 11
XIP C12 C10 C 0 1 Y N N N N N -138.784 1.206 1.856 0.297 -0.677 -0.908 C12 XIP 12
XIP C2 C11 C 0 1 Y N N N N N -140.598 2.083 -0.539 -3.319 -0.457 -0.741 C2 XIP 13
XIP C5 C12 C 0 1 N N N N N N -141.299 1.208 2.259 -0.654 -2.822 -0.085 C5 XIP 14
XIP C7 C13 C 0 1 Y N N N N N -139.706 2.064 3.883 1.567 -2.001 0.677 C7 XIP 15
XIP C8 C14 C 0 1 Y N N N N N -138.452 2.494 4.275 2.565 -1.070 0.654 C8 XIP 16
XIP C9 C15 C 0 1 Y N N N N N -137.346 2.299 3.455 2.442 0.068 -0.149 C9 XIP 17
XIP O1 O2 O 0 1 N N N N N N -134.991 2.641 3.214 3.414 2.062 -0.873 O1 XIP 18
XIP H2 H1 H 0 1 N N N N N N -139.616 3.240 -2.042 -4.435 1.303 -1.194 H2 XIP 19
XIP H4 H2 H 0 1 N N N N N N -142.558 -0.080 1.276 -2.723 -3.166 -0.254 H4 XIP 20
XIP H11 H3 H 0 1 N N N N N N -143.274 0.095 -1.042 -0.773 -0.624 1.506 H11 XIP 21
XIP H12 H4 H 0 1 N N N N N N -143.018 0.970 -3.316 -1.357 1.751 1.746 H12 XIP 22
XIP H H5 H 0 1 N N N N N N -141.818 2.237 -4.740 -3.970 3.405 -0.109 H XIP 23
XIP H1 H6 H 0 1 N N N N N N -141.177 3.621 -4.157 -2.764 3.580 1.048 H1 XIP 24
XIP H8 H7 H 0 1 N N N N N N -135.177 3.816 5.186 5.305 1.581 0.529 H8 XIP 25
XIP H9 H8 H 0 1 N N N N N N -136.674 1.437 1.613 1.201 1.133 -1.550 H9 XIP 26
XIP H10 H9 H 0 1 N N N N N N -138.900 0.682 0.919 -0.588 -0.534 -1.511 H10 XIP 27
XIP H3 H10 H 0 1 N N N N N N -139.930 2.417 0.241 -3.869 -1.076 -1.434 H3 XIP 28
XIP H5 H11 H 0 1 N N N N N N -142.016 1.474 3.022 -0.408 -3.873 -0.041 H5 XIP 29
XIP H6 H12 H 0 1 N N N N N N -140.547 2.210 4.545 1.662 -2.880 1.297 H6 XIP 30
XIP H7 H13 H 0 1 N N N N N N -138.330 2.987 5.228 3.450 -1.213 1.256 H7 XIP 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XIP N C SING N N 1
XIP C C1 DOUB Y N 2
XIP C1 C2 SING Y N 3
XIP C2 C3 DOUB Y N 4
XIP C3 C4 SING N N 5
XIP C4 C5 DOUB N Z 6
XIP C5 C6 SING N N 7
XIP C6 C7 DOUB Y N 8
XIP C7 C8 SING Y N 9
XIP C8 C9 DOUB Y N 10
XIP C9 C10 SING N N 11
XIP O C10 SING N N 12
XIP C10 O1 DOUB N N 13
XIP C11 C9 SING Y N 14
XIP C12 C11 DOUB Y N 15
XIP C6 C12 SING Y N 16
XIP C13 C3 SING Y N 17
XIP C14 C13 DOUB Y N 18
XIP C C14 SING Y N 19
XIP C1 H2 SING N N 20
XIP C4 H4 SING N N 21
XIP C13 H11 SING N N 22
XIP C14 H12 SING N N 23
XIP N H SING N N 24
XIP N H1 SING N N 25
XIP O H8 SING N N 26
XIP C11 H9 SING N N 27
XIP C12 H10 SING N N 28
XIP C2 H3 SING N N 29
XIP C5 H5 SING N N 30
XIP C7 H6 SING N N 31
XIP C8 H7 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XIP InChI InChI 1.06 "InChI=1S/C15H13NO2/c16-14-9-5-12(6-10-14)2-1-11-3-7-13(8-4-11)15(17)18/h1-10H,16H2,(H,17,18)"
XIP InChIKey InChI 1.06 XLNJCEOZYNLROH-UHFFFAOYSA-N
XIP SMILES_CANONICAL CACTVS 3.385 "Nc1ccc(cc1)\C=C/c2ccc(cc2)C(O)=O"
XIP SMILES CACTVS 3.385 "Nc1ccc(cc1)C=Cc2ccc(cc2)C(O)=O"
XIP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=Cc2ccc(cc2)N)C(=O)O"
XIP SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=Cc2ccc(cc2)N)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id XIP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "4-[2-(4-aminophenyl)ethenyl]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XIP 'Create component' 2023-11-02 PDBE
XIP 'Initial release' 2024-03-20 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id XIP
_pdbx_chem_comp_synonyms.name "4-[2-(4-aminophenyl)ethenyl]benzoic acid"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id XIP
_pdbe_chem_comp_synonyms.name '4-[2-(4-aminophenyl)ethenyl]benzoic acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XIP C1 C 5.598 -4.732 1
XIP C3 C 4.299 -2.482 2
XIP C4 C 4.299 -0.983 3
XIP C6 C 5.598 1.268 4
XIP C13 C 3.000 -3.232 5
XIP C14 C 3.000 -4.732 6
XIP N N 4.299 -6.982 7
XIP C C 4.299 -5.482 8
XIP O O 6.897 6.518 9
XIP C10 C 5.598 5.768 10
XIP C11 C 6.897 3.518 11
XIP C12 C 6.897 2.018 12
XIP C2 C 5.598 -3.232 13
XIP C5 C 5.598 -0.233 14
XIP C7 C 4.299 2.018 15
XIP C8 C 4.299 3.518 16
XIP C9 C 5.598 4.268 17
XIP O1 O 4.299 6.518 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XIP N C SINGLE NONE 1
XIP C C1 DOUBLE NONE 2
XIP C1 C2 SINGLE NONE 3
XIP C2 C3 DOUBLE NONE 4
XIP C3 C4 SINGLE ENDUPRIGHT 5
XIP C4 C5 DOUBLE NONE 6
XIP C5 C6 SINGLE ENDDOWNRIGHT 7
XIP C6 C7 SINGLE NONE 8
XIP C7 C8 DOUBLE NONE 9
XIP C8 C9 SINGLE NONE 10
XIP C9 C10 SINGLE NONE 11
XIP O C10 SINGLE NONE 12
XIP C10 O1 DOUBLE NONE 13
XIP C11 C9 DOUBLE NONE 14
XIP C12 C11 SINGLE NONE 15
XIP C6 C12 DOUBLE NONE 16
XIP C13 C3 SINGLE NONE 17
XIP C14 C13 DOUBLE NONE 18
XIP C C14 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XIP MurckoScaffold S1 scaffold C(=C\c1ccccc1)\c1ccccc1 InChI=1S/C14H12/c1-3-7-13(8-4-1)11-12-14-9-5-2-6-10-14/h1-12H/b12-11- PJANXHGTPQOBST-QXMHVHEDSA-N
XIP phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XIP C1 S1 1
XIP C3 S1 1
XIP C4 S1 1
XIP C6 S1 1
XIP C13 S1 1
XIP C14 S1 1
XIP C S1 1
XIP C11 S1 1
XIP C12 S1 1
XIP C2 S1 1
XIP C5 S1 1
XIP C7 S1 1
XIP C8 S1 1
XIP C9 S1 1
XIP C1 F1 1
XIP C F1 1
XIP C14 F1 1
XIP C13 F1 1
XIP C3 F1 1
XIP C2 F1 1
XIP C6 F1 2
XIP C7 F1 2
XIP C8 F1 2
XIP C9 F1 2
XIP C11 F1 2
XIP C12 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id XIP
_pdbe_chem_comp_rdkit_properties.exactmw 239.095
_pdbe_chem_comp_rdkit_properties.amw 239.274
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 123.657
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.593
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.562
_pdbe_chem_comp_rdkit_properties.chi0v 8.764
_pdbe_chem_comp_rdkit_properties.chi1v 4.632
_pdbe_chem_comp_rdkit_properties.chi2v 1.753
_pdbe_chem_comp_rdkit_properties.chi3v 1.753
_pdbe_chem_comp_rdkit_properties.chi4v 0.970
_pdbe_chem_comp_rdkit_properties.chi0n 21.764
_pdbe_chem_comp_rdkit_properties.chi1n 10.935
_pdbe_chem_comp_rdkit_properties.chi2n 1.753
_pdbe_chem_comp_rdkit_properties.chi3n 1.753
_pdbe_chem_comp_rdkit_properties.chi4n 0.970
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.550
_pdbe_chem_comp_rdkit_properties.kappa1 3.720
_pdbe_chem_comp_rdkit_properties.kappa2 5.187
_pdbe_chem_comp_rdkit_properties.kappa3 2.980
_pdbe_chem_comp_rdkit_properties.Phi 1.072
#
_pdbe_chem_comp_external_mappings.comp_id XIP
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 230760
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XIP C1 -2.451 -1.006 -0.489 ETKDGv3 1
XIP C3 -1.780 0.642 1.196 ETKDGv3 2
XIP C4 -0.967 1.102 2.343 ETKDGv3 3
XIP C6 1.276 0.483 1.398 ETKDGv3 4
XIP C13 -2.887 1.502 0.716 ETKDGv3 5
XIP C14 -3.666 1.101 -0.296 ETKDGv3 6
XIP N -4.267 -0.633 -2.024 ETKDGv3 7
XIP C -3.437 -0.214 -0.938 ETKDGv3 8
XIP O 5.093 -1.781 -1.218 ETKDGv3 9
XIP C10 4.072 -0.910 -1.587 ETKDGv3 10
XIP C11 2.120 0.426 -0.901 ETKDGv3 11
XIP C12 1.173 0.907 0.125 ETKDGv3 12
XIP C2 -1.597 -0.568 0.634 ETKDGv3 13
XIP C5 0.365 0.967 2.460 ETKDGv3 14
XIP C7 2.386 -0.423 1.770 ETKDGv3 15
XIP C8 3.249 -0.854 0.842 ETKDGv3 16
XIP C9 3.115 -0.419 -0.571 ETKDGv3 17
XIP O1 3.973 -0.549 -2.791 ETKDGv3 18
XIP H2 -2.273 -1.974 -0.941 ETKDGv3 19
XIP H4 -1.496 1.579 3.159 ETKDGv3 20
XIP H11 -3.065 2.465 1.179 ETKDGv3 21
XIP H12 -4.467 1.741 -0.644 ETKDGv3 22
XIP H -5.035 -0.016 -2.371 ETKDGv3 23
XIP H1 -4.123 -1.557 -2.489 ETKDGv3 24
XIP H8 5.755 -2.126 -1.902 ETKDGv3 25
XIP H9 1.995 0.772 -1.920 ETKDGv3 26
XIP H10 0.408 1.616 -0.166 ETKDGv3 27
XIP H3 -0.834 -1.243 1.000 ETKDGv3 28
XIP H5 0.817 1.243 3.405 ETKDGv3 29
XIP H6 2.497 -0.749 2.797 ETKDGv3 30
XIP H7 4.049 -1.522 1.136 ETKDGv3 31
#