data_XJ4
#
_chem_comp.id XJ4
_chem_comp.name
"N'-[[3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methyl-6-phenylazanyl-pyrimidin-2-yl]phenyl]methyl]-N-methyl-ethane-1,2-diamine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H30 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-01-10
_chem_comp.pdbx_modified_date 2021-11-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 442.556
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XJ4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6J01
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XJ4 C1 C1 C 0 1 N N N N N N 15.649 17.485 284.758 8.760 0.489 -2.382 C1 XJ4 1
XJ4 C3 C2 C 0 1 N N N N N N 14.899 19.542 283.802 6.671 1.022 -1.281 C3 XJ4 2
XJ4 C4 C3 C 0 1 N N N N N N 15.300 20.710 282.903 5.971 1.092 0.078 C4 XJ4 3
XJ4 C6 C4 C 0 1 N N N N N N 14.502 22.494 284.262 3.881 1.625 1.179 C6 XJ4 4
XJ4 C7 C5 C 0 1 Y N N N N N 13.520 23.665 284.336 2.467 2.093 0.949 C7 XJ4 5
XJ4 C8 C6 C 0 1 Y N N N N N 12.251 23.456 284.850 1.466 1.172 0.719 C8 XJ4 6
XJ4 C9 C7 C 0 1 Y N N N N N 11.350 24.505 284.908 0.158 1.607 0.507 C9 XJ4 7
XJ4 C10 C8 C 0 1 Y N N N N N 9.974 24.221 285.504 -0.923 0.622 0.259 C10 XJ4 8
XJ4 C12 C9 C 0 1 Y N N N N N 7.704 24.509 285.511 -1.569 -1.584 0.031 C12 XJ4 9
XJ4 C14 C10 C 0 1 Y N N N N N 6.424 26.208 284.087 0.040 -3.350 0.358 C14 XJ4 10
XJ4 C15 C11 C 0 1 Y N N N N N 7.406 27.191 284.125 0.769 -2.649 1.310 C15 XJ4 11
XJ4 C16 C12 C 0 1 Y N N N N N 7.337 28.270 283.255 2.043 -3.063 1.646 C16 XJ4 12
XJ4 C17 C13 C 0 1 Y N N N N N 6.273 28.362 282.358 2.593 -4.174 1.035 C17 XJ4 13
XJ4 C18 C14 C 0 1 Y N N N N N 5.286 27.385 282.329 1.871 -4.875 0.086 C18 XJ4 14
XJ4 C19 C15 C 0 1 Y N N N N N 5.358 26.307 283.198 0.594 -4.470 -0.249 C19 XJ4 15
XJ4 C20 C16 C 0 1 Y N N N N N 7.624 23.664 286.602 -2.881 -1.167 -0.189 C20 XJ4 16
XJ4 C21 C17 C 0 1 N N N N N N 6.243 23.387 287.178 -3.978 -2.169 -0.440 C21 XJ4 17
XJ4 C22 C18 C 0 1 Y N N N N N 8.791 23.109 287.131 -3.154 0.201 -0.165 C22 XJ4 18
XJ4 C23 C19 C 0 1 Y N N N N N 8.847 22.161 288.333 -4.533 0.695 -0.393 C23 XJ4 19
XJ4 C24 C20 C 0 1 Y N N N N N 8.572 22.470 289.649 -5.347 1.362 0.481 C24 XJ4 20
XJ4 C25 C21 C 0 1 N N N N N N 8.101 23.816 290.187 -5.023 1.753 1.900 C25 XJ4 21
XJ4 C28 C22 C 0 1 Y N N N N N 9.239 20.813 288.288 -5.320 0.595 -1.575 C28 XJ4 22
XJ4 C29 C23 C 0 1 N N N N N N 9.640 20.030 287.044 -4.919 -0.049 -2.877 C29 XJ4 23
XJ4 C31 C24 C 0 1 Y N N N N N 11.692 25.772 284.462 -0.129 2.970 0.528 C31 XJ4 24
XJ4 C32 C25 C 0 1 Y N N N N N 12.964 25.980 283.942 0.881 3.882 0.759 C32 XJ4 25
XJ4 C33 C26 C 0 1 Y N N N N N 13.873 24.926 283.881 2.175 3.445 0.975 C33 XJ4 26
XJ4 N2 N1 N 0 1 N N N N N N 15.942 18.525 283.782 8.056 0.568 -1.096 N2 XJ4 27
XJ4 N5 N2 N 0 1 N N N N N N 14.334 21.794 282.998 4.586 1.546 -0.108 N5 XJ4 28
XJ4 N11 N3 N 0 1 Y N N N N N 8.893 24.764 284.988 -0.627 -0.671 0.249 N11 XJ4 29
XJ4 N13 N4 N 0 1 N N N N N N 6.470 25.072 284.988 -1.250 -2.934 0.017 N13 XJ4 30
XJ4 N27 N5 N 0 1 Y N N N N N 9.169 20.340 289.545 -6.455 1.168 -1.306 N27 XJ4 31
XJ4 N30 N6 N 0 1 Y N N N N N 9.939 23.411 286.544 -2.158 1.056 0.060 N30 XJ4 32
XJ4 O26 O1 O 0 1 Y N N N N N 8.768 21.371 290.353 -6.489 1.597 -0.176 O26 XJ4 33
XJ4 H1 H1 H 0 1 N N N N N N 16.443 16.724 284.733 8.246 -0.215 -3.036 H1 XJ4 34
XJ4 H2 H2 H 0 1 N N N N N N 15.598 17.929 285.763 8.775 1.474 -2.849 H2 XJ4 35
XJ4 H3 H3 H 0 1 N N N N N N 14.684 17.016 284.515 9.783 0.151 -2.216 H3 XJ4 36
XJ4 H4 H4 H 0 1 N N N N N N 14.761 19.904 284.832 6.142 0.321 -1.927 H4 XJ4 37
XJ4 H5 H5 H 0 1 N N N N N N 13.957 19.107 283.437 6.671 2.011 -1.741 H5 XJ4 38
XJ4 H6 H6 H 0 1 N N N N N N 15.349 20.362 281.861 5.970 0.104 0.537 H6 XJ4 39
XJ4 H7 H7 H 0 1 N N N N N N 16.288 21.080 283.213 6.500 1.793 0.723 H7 XJ4 40
XJ4 H8 H8 H 0 1 N N N N N N 14.307 21.800 285.093 4.396 2.330 1.832 H8 XJ4 41
XJ4 H9 H9 H 0 1 N N N N N N 15.531 22.875 284.335 3.866 0.640 1.646 H9 XJ4 42
XJ4 H10 H10 H 0 1 N N N N N N 11.965 22.477 285.205 1.694 0.117 0.703 H10 XJ4 43
XJ4 H11 H11 H 0 1 N N N N N N 8.221 27.115 284.830 0.340 -1.780 1.788 H11 XJ4 44
XJ4 H12 H12 H 0 1 N N N N N N 8.101 29.033 283.272 2.610 -2.518 2.386 H12 XJ4 45
XJ4 H13 H13 H 0 1 N N N N N N 6.216 29.201 281.680 3.590 -4.496 1.298 H13 XJ4 46
XJ4 H14 H14 H 0 1 N N N N N N 4.465 27.465 281.632 2.304 -5.742 -0.390 H14 XJ4 47
XJ4 H15 H15 H 0 1 N N N N N N 4.590 25.548 283.185 0.030 -5.017 -0.990 H15 XJ4 48
XJ4 H16 H16 H 0 1 N N N N N N 5.808 22.507 286.682 -4.425 -2.463 0.510 H16 XJ4 49
XJ4 H17 H17 H 0 1 N N N N N N 6.328 23.195 288.258 -4.740 -1.721 -1.077 H17 XJ4 50
XJ4 H18 H18 H 0 1 N N N N N N 5.594 24.260 287.011 -3.562 -3.047 -0.933 H18 XJ4 51
XJ4 H19 H19 H 0 1 N N N N N N 7.943 23.742 291.273 -4.569 2.743 1.910 H19 XJ4 52
XJ4 H20 H20 H 0 1 N N N N N N 8.863 24.581 289.979 -5.939 1.767 2.491 H20 XJ4 53
XJ4 H21 H21 H 0 1 N N N N N N 7.157 24.096 289.697 -4.327 1.030 2.327 H21 XJ4 54
XJ4 H22 H22 H 0 1 N N N N N N 9.872 18.992 287.323 -5.103 -1.122 -2.824 H22 XJ4 55
XJ4 H23 H23 H 0 1 N N N N N N 8.810 20.039 286.322 -5.504 0.381 -3.690 H23 XJ4 56
XJ4 H24 H24 H 0 1 N N N N N N 10.527 20.494 286.589 -3.859 0.130 -3.059 H24 XJ4 57
XJ4 H25 H25 H 0 1 N N N N N N 10.982 26.584 284.518 -1.140 3.312 0.364 H25 XJ4 58
XJ4 H26 H26 H 0 1 N N N N N N 13.248 26.959 283.585 0.659 4.939 0.776 H26 XJ4 59
XJ4 H27 H27 H 0 1 N N N N N N 14.860 25.093 283.476 2.962 4.162 1.155 H27 XJ4 60
XJ4 H28 H28 H 0 1 N N N N N N 15.989 18.118 282.870 8.549 1.166 -0.449 H28 XJ4 61
XJ4 H30 H30 H 0 1 N N N N N N 14.477 22.434 282.243 4.557 2.431 -0.591 H30 XJ4 62
XJ4 H32 H32 H 0 1 N N N N N N 5.605 24.653 285.265 -1.921 -3.589 -0.229 H32 XJ4 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XJ4 C18 C17 DOUB Y N 1
XJ4 C18 C19 SING Y N 2
XJ4 C17 C16 SING Y N 3
XJ4 C4 N5 SING N N 4
XJ4 C4 C3 SING N N 5
XJ4 N5 C6 SING N N 6
XJ4 C19 C14 DOUB Y N 7
XJ4 C16 C15 DOUB Y N 8
XJ4 N2 C3 SING N N 9
XJ4 N2 C1 SING N N 10
XJ4 C33 C32 DOUB Y N 11
XJ4 C33 C7 SING Y N 12
XJ4 C32 C31 SING Y N 13
XJ4 C14 C15 SING Y N 14
XJ4 C14 N13 SING N N 15
XJ4 C6 C7 SING N N 16
XJ4 C7 C8 DOUB Y N 17
XJ4 C31 C9 DOUB Y N 18
XJ4 C8 C9 SING Y N 19
XJ4 C9 C10 SING N N 20
XJ4 N13 C12 SING N N 21
XJ4 N11 C10 DOUB Y N 22
XJ4 N11 C12 SING Y N 23
XJ4 C10 N30 SING Y N 24
XJ4 C12 C20 DOUB Y N 25
XJ4 N30 C22 DOUB Y N 26
XJ4 C20 C22 SING Y N 27
XJ4 C20 C21 SING N N 28
XJ4 C29 C28 SING N N 29
XJ4 C22 C23 SING N N 30
XJ4 C28 C23 SING Y N 31
XJ4 C28 N27 DOUB Y N 32
XJ4 C23 C24 DOUB Y N 33
XJ4 N27 O26 SING Y N 34
XJ4 C24 C25 SING N N 35
XJ4 C24 O26 SING Y N 36
XJ4 C1 H1 SING N N 37
XJ4 C1 H2 SING N N 38
XJ4 C1 H3 SING N N 39
XJ4 C3 H4 SING N N 40
XJ4 C3 H5 SING N N 41
XJ4 C4 H6 SING N N 42
XJ4 C4 H7 SING N N 43
XJ4 C6 H8 SING N N 44
XJ4 C6 H9 SING N N 45
XJ4 C8 H10 SING N N 46
XJ4 C15 H11 SING N N 47
XJ4 C16 H12 SING N N 48
XJ4 C17 H13 SING N N 49
XJ4 C18 H14 SING N N 50
XJ4 C19 H15 SING N N 51
XJ4 C21 H16 SING N N 52
XJ4 C21 H17 SING N N 53
XJ4 C21 H18 SING N N 54
XJ4 C25 H19 SING N N 55
XJ4 C25 H20 SING N N 56
XJ4 C25 H21 SING N N 57
XJ4 C29 H22 SING N N 58
XJ4 C29 H23 SING N N 59
XJ4 C29 H24 SING N N 60
XJ4 C31 H25 SING N N 61
XJ4 C32 H26 SING N N 62
XJ4 C33 H27 SING N N 63
XJ4 N2 H28 SING N N 64
XJ4 N5 H30 SING N N 65
XJ4 N13 H32 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XJ4 InChI InChI 1.03 InChI=1S/C26H30N6O/c1-17-24(23-18(2)32-33-19(23)3)30-26(31-25(17)29-22-11-6-5-7-12-22)21-10-8-9-20(15-21)16-28-14-13-27-4/h5-12,15,27-28H,13-14,16H2,1-4H3,(H,29,30,31)
XJ4 InChIKey InChI 1.03 DVIUIRPCVXVFSX-UHFFFAOYSA-N
XJ4 SMILES_CANONICAL CACTVS 3.385 CNCCNCc1cccc(c1)c2nc(Nc3ccccc3)c(C)c(n2)c4c(C)onc4C
XJ4 SMILES CACTVS 3.385 CNCCNCc1cccc(c1)c2nc(Nc3ccccc3)c(C)c(n2)c4c(C)onc4C
XJ4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1c(nc(nc1Nc2ccccc2)c3cccc(c3)CNCCNC)c4c(noc4C)C
XJ4 SMILES "OpenEye OEToolkits" 2.0.6 Cc1c(nc(nc1Nc2ccccc2)c3cccc(c3)CNCCNC)c4c(noc4C)C
#
_pdbx_chem_comp_identifier.comp_id XJ4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"~{N}'-[[3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methyl-6-phenylazanyl-pyrimidin-2-yl]phenyl]methyl]-~{N}-methyl-ethane-1,2-diamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XJ4 'Create component' 2019-01-10 PDBJ
XJ4 'Initial release' 2021-11-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XJ4 C1 C 14.691 -7.904 1
XJ4 C3 C 13.392 -5.654 2
XJ4 C4 C 12.093 -4.904 3
XJ4 C6 C 10.794 -2.654 4
XJ4 C7 C 10.794 -1.154 5
XJ4 C8 C 9.495 -0.404 6
XJ4 C9 C 9.495 1.096 7
XJ4 C10 C 8.196 1.846 8
XJ4 C12 C 5.598 1.846 9
XJ4 C14 C 4.299 -0.404 10
XJ4 C15 C 3.000 -1.154 11
XJ4 C16 C 3.000 -2.654 12
XJ4 C17 C 4.299 -3.404 13
XJ4 C18 C 5.598 -2.654 14
XJ4 C19 C 5.598 -1.154 15
XJ4 C20 C 5.598 3.346 16
XJ4 C21 C 4.299 4.096 17
XJ4 C22 C 6.897 4.096 18
XJ4 C23 C 6.897 5.596 19
XJ4 C24 C 5.684 6.478 20
XJ4 C25 C 4.257 6.014 21
XJ4 C28 C 8.111 6.478 22
XJ4 C29 C 9.537 6.014 23
XJ4 C31 C 10.794 1.846 24
XJ4 C32 C 12.093 1.096 25
XJ4 C33 C 12.093 -0.404 26
XJ4 N2 N 13.392 -7.154 27
XJ4 N5 N 12.093 -3.404 28
XJ4 N11 N 6.897 1.096 29
XJ4 N13 N 4.299 1.096 30
XJ4 N27 N 7.647 7.904 31
XJ4 N30 N 8.196 3.346 32
XJ4 O26 O 6.147 7.904 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XJ4 C18 C17 DOUBLE NONE 1
XJ4 C18 C19 SINGLE NONE 2
XJ4 C17 C16 SINGLE NONE 3
XJ4 C4 N5 SINGLE NONE 4
XJ4 C4 C3 SINGLE NONE 5
XJ4 N5 C6 SINGLE NONE 6
XJ4 C19 C14 DOUBLE NONE 7
XJ4 C16 C15 DOUBLE NONE 8
XJ4 N2 C3 SINGLE NONE 9
XJ4 N2 C1 SINGLE NONE 10
XJ4 C33 C32 SINGLE NONE 11
XJ4 C33 C7 DOUBLE NONE 12
XJ4 C32 C31 DOUBLE NONE 13
XJ4 C14 C15 SINGLE NONE 14
XJ4 C14 N13 SINGLE NONE 15
XJ4 C6 C7 SINGLE NONE 16
XJ4 C7 C8 SINGLE NONE 17
XJ4 C31 C9 SINGLE NONE 18
XJ4 C8 C9 DOUBLE NONE 19
XJ4 C9 C10 SINGLE NONE 20
XJ4 N13 C12 SINGLE NONE 21
XJ4 N11 C10 DOUBLE NONE 22
XJ4 N11 C12 SINGLE NONE 23
XJ4 C10 N30 SINGLE NONE 24
XJ4 C12 C20 DOUBLE NONE 25
XJ4 N30 C22 DOUBLE NONE 26
XJ4 C20 C22 SINGLE NONE 27
XJ4 C20 C21 SINGLE NONE 28
XJ4 C29 C28 SINGLE NONE 29
XJ4 C22 C23 SINGLE NONE 30
XJ4 C28 C23 SINGLE NONE 31
XJ4 C28 N27 DOUBLE NONE 32
XJ4 C23 C24 DOUBLE NONE 33
XJ4 N27 O26 SINGLE NONE 34
XJ4 C24 C25 SINGLE NONE 35
XJ4 C24 O26 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XJ4 MurckoScaffold S1 scaffold c1ccc(Nc2cc(-c3cnoc3)nc(-c3ccccc3)n2)cc1 InChI=1S/C19H14N4O/c1-3-7-14(8-4-1)19-22-17(15-12-20-24-13-15)11-18(23-19)21-16-9-5-2-6-10-16/h1-13H,(H,21,22,23) ANTGNCHHPFAVFK-UHFFFAOYSA-N
XJ4 isoxazole F1 fragment c1cnoc1 InChI=1S/C3H3NO/c1-2-4-5-3-1/h1-3H CTAPFRYPJLPFDF-UHFFFAOYSA-N
XJ4 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XJ4 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XJ4 C7 S1 1
XJ4 C8 S1 1
XJ4 C9 S1 1
XJ4 C10 S1 1
XJ4 C12 S1 1
XJ4 C14 S1 1
XJ4 C15 S1 1
XJ4 C16 S1 1
XJ4 C17 S1 1
XJ4 C18 S1 1
XJ4 C19 S1 1
XJ4 C20 S1 1
XJ4 C22 S1 1
XJ4 C23 S1 1
XJ4 C24 S1 1
XJ4 C28 S1 1
XJ4 C31 S1 1
XJ4 C32 S1 1
XJ4 C33 S1 1
XJ4 N11 S1 1
XJ4 N13 S1 1
XJ4 N27 S1 1
XJ4 N30 S1 1
XJ4 O26 S1 1
XJ4 C24 F1 1
XJ4 C23 F1 1
XJ4 C28 F1 1
XJ4 N27 F1 1
XJ4 O26 F1 1
XJ4 C7 F2 1
XJ4 C33 F2 1
XJ4 C32 F2 1
XJ4 C31 F2 1
XJ4 C9 F2 1
XJ4 C8 F2 1
XJ4 C14 F2 2
XJ4 C19 F2 2
XJ4 C18 F2 2
XJ4 C17 F2 2
XJ4 C16 F2 2
XJ4 C15 F2 2
XJ4 C20 F3 1
XJ4 C12 F3 1
XJ4 N11 F3 1
XJ4 C10 F3 1
XJ4 N30 F3 1
XJ4 C22 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XJ4
_pdbe_chem_comp_rdkit_properties.exactmw 442.248
_pdbe_chem_comp_rdkit_properties.amw 442.567
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 63
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.269
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 236.535
_pdbe_chem_comp_rdkit_properties.tpsa 87.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.036
_pdbe_chem_comp_rdkit_properties.CrippenMR 127.178
_pdbe_chem_comp_rdkit_properties.chi0v 16.092
_pdbe_chem_comp_rdkit_properties.chi1v 8.596
_pdbe_chem_comp_rdkit_properties.chi2v 3.701
_pdbe_chem_comp_rdkit_properties.chi3v 3.701
_pdbe_chem_comp_rdkit_properties.chi4v 2.383
_pdbe_chem_comp_rdkit_properties.chi0n 46.092
_pdbe_chem_comp_rdkit_properties.chi1n 23.438
_pdbe_chem_comp_rdkit_properties.chi2n 3.701
_pdbe_chem_comp_rdkit_properties.chi3n 3.701
_pdbe_chem_comp_rdkit_properties.chi4n 2.383
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.550
_pdbe_chem_comp_rdkit_properties.kappa1 6.112
_pdbe_chem_comp_rdkit_properties.kappa2 10.378
_pdbe_chem_comp_rdkit_properties.kappa3 5.271
_pdbe_chem_comp_rdkit_properties.Phi 1.922
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XJ4 UniChem PDBe XJ4
XJ4 UniChem SureChEMBL SCHEMBL21482259
XJ4 UniChem PubChem 146188223
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XJ4 C1 8.569 -1.095 -0.446 ETKDGv3 1
XJ4 C3 6.529 -1.126 0.831 ETKDGv3 2
XJ4 C4 5.074 -0.632 0.881 ETKDGv3 3
XJ4 C6 3.860 -0.713 -1.248 ETKDGv3 4
XJ4 C7 2.777 0.309 -1.024 ETKDGv3 5
XJ4 C8 1.409 -0.144 -0.669 ETKDGv3 6
XJ4 C9 0.425 0.749 -0.443 ETKDGv3 7
XJ4 C10 -0.940 0.300 -0.082 ETKDGv3 8
XJ4 C12 -3.205 0.787 0.539 ETKDGv3 9
XJ4 C14 -4.033 3.178 0.402 ETKDGv3 10
XJ4 C15 -4.545 4.271 1.264 ETKDGv3 11
XJ4 C16 -4.454 5.546 0.866 ETKDGv3 12
XJ4 C17 -3.852 5.872 -0.443 ETKDGv3 13
XJ4 C18 -3.405 4.891 -1.235 ETKDGv3 14
XJ4 C19 -3.509 3.482 -0.802 ETKDGv3 15
XJ4 C20 -3.513 -0.529 0.636 ETKDGv3 16
XJ4 C21 -4.867 -0.978 1.131 ETKDGv3 17
XJ4 C22 -2.450 -1.518 0.278 ETKDGv3 18
XJ4 C23 -2.706 -2.969 0.230 ETKDGv3 19
XJ4 C24 -2.016 -3.921 0.846 ETKDGv3 20
XJ4 C25 -0.865 -3.734 1.782 ETKDGv3 21
XJ4 C28 -3.667 -3.687 -0.614 ETKDGv3 22
XJ4 C29 -4.669 -3.083 -1.543 ETKDGv3 23
XJ4 C31 0.731 2.200 -0.558 ETKDGv3 24
XJ4 C32 1.964 2.609 -0.877 ETKDGv3 25
XJ4 C33 3.035 1.624 -1.118 ETKDGv3 26
XJ4 N2 7.122 -0.879 -0.489 ETKDGv3 27
XJ4 N5 4.170 -1.408 0.009 ETKDGv3 28
XJ4 N11 -1.867 1.173 0.180 ETKDGv3 29
XJ4 N13 -4.169 1.816 0.842 ETKDGv3 30
XJ4 N27 -3.540 -4.963 -0.445 ETKDGv3 31
XJ4 N30 -1.262 -1.097 -0.038 ETKDGv3 32
XJ4 O26 -2.519 -5.153 0.458 ETKDGv3 33
XJ4 H1 8.806 -2.127 -0.103 ETKDGv3 34
XJ4 H2 9.049 -0.355 0.230 ETKDGv3 35
XJ4 H3 8.993 -0.955 -1.462 ETKDGv3 36
XJ4 H4 6.572 -2.210 1.082 ETKDGv3 37
XJ4 H5 7.096 -0.571 1.612 ETKDGv3 38
XJ4 H6 4.713 -0.744 1.926 ETKDGv3 39
XJ4 H7 5.042 0.457 0.655 ETKDGv3 40
XJ4 H8 4.771 -0.254 -1.692 ETKDGv3 41
XJ4 H9 3.484 -1.451 -1.990 ETKDGv3 42
XJ4 H10 1.222 -1.208 -0.590 ETKDGv3 43
XJ4 H11 -4.988 4.040 2.225 ETKDGv3 44
XJ4 H12 -4.823 6.342 1.500 ETKDGv3 45
XJ4 H13 -3.778 6.904 -0.760 ETKDGv3 46
XJ4 H14 -2.970 5.126 -2.198 ETKDGv3 47
XJ4 H15 -3.179 2.705 -1.479 ETKDGv3 48
XJ4 H16 -5.049 -0.578 2.150 ETKDGv3 49
XJ4 H17 -5.659 -0.619 0.441 ETKDGv3 50
XJ4 H18 -4.945 -2.079 1.213 ETKDGv3 51
XJ4 H19 -0.644 -4.691 2.299 ETKDGv3 52
XJ4 H20 0.032 -3.415 1.211 ETKDGv3 53
XJ4 H21 -1.114 -2.964 2.541 ETKDGv3 54
XJ4 H22 -5.661 -3.047 -1.048 ETKDGv3 55
XJ4 H23 -4.746 -3.697 -2.465 ETKDGv3 56
XJ4 H24 -4.363 -2.055 -1.827 ETKDGv3 57
XJ4 H25 -0.041 2.940 -0.386 ETKDGv3 58
XJ4 H26 2.180 3.667 -0.958 ETKDGv3 59
XJ4 H27 4.027 1.979 -1.366 ETKDGv3 60
XJ4 H28 6.730 -1.582 -1.158 ETKDGv3 61
XJ4 H30 4.578 -2.346 -0.211 ETKDGv3 62
XJ4 H32 -4.948 1.613 1.506 ETKDGv3 63
#