data_XJB
#
_chem_comp.id XJB
_chem_comp.name "3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H26 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-11-22
_chem_comp.pdbx_modified_date 2023-12-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 438.476
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XJB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8F80
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XJB C16 C1 C 0 1 Y N N N N N -6.955 5.032 11.166 -4.016 0.255 0.209 C16 XJB 1
XJB C18 C2 C 0 1 Y N N N N N -6.572 6.911 12.771 -2.539 -1.638 0.879 C18 XJB 2
XJB C21 C3 C 0 1 N N N N N N -9.623 10.531 13.289 -2.027 -5.386 -2.032 C21 XJB 3
XJB C20 C4 C 0 1 Y N N N N N -8.098 8.722 12.900 -2.254 -3.539 -0.553 C20 XJB 4
XJB C17 C5 C 0 1 Y N N N N N -7.304 6.357 11.734 -3.400 -1.067 -0.057 C17 XJB 5
XJB C14 C6 C 0 1 N N N N N N -12.347 6.232 15.974 5.184 -1.021 0.703 C14 XJB 6
XJB C13 C7 C 0 1 N N N N N N -10.916 6.056 15.538 5.352 0.496 0.816 C13 XJB 7
XJB C5 C8 C 0 1 N N N N N N -6.653 3.837 15.556 0.413 1.106 0.557 C5 XJB 8
XJB C2 C9 C 0 1 Y N N N N N -6.092 2.827 11.209 -3.889 2.517 0.996 C2 XJB 9
XJB C6 C10 C 0 1 N N N N N N -6.766 5.293 15.936 1.437 1.498 -0.511 C6 XJB 10
XJB C3 C11 C 0 1 Y N N N N N -6.378 4.035 11.896 -3.261 1.289 0.764 C3 XJB 11
XJB C8 C12 C 0 1 Y N N N N N -7.719 7.860 16.650 3.537 2.024 -2.130 C8 XJB 12
XJB C12 C13 C 0 1 Y N N N N N -9.962 7.126 16.055 5.082 1.132 -0.523 C12 XJB 13
XJB C9 C14 C 0 1 Y N N N N N -8.211 9.108 16.981 4.588 2.312 -2.978 C9 XJB 14
XJB C4 C15 C 0 1 N N N N N N -7.084 3.567 14.135 -0.992 1.474 0.075 C4 XJB 15
XJB C1 C16 C 0 1 Y N N N N N -6.886 3.709 9.259 -5.857 1.651 0.152 C1 XJB 16
XJB C10 C17 C 0 1 Y N N N N N -9.552 9.377 16.864 5.884 2.011 -2.602 C10 XJB 17
XJB C11 C18 C 0 1 Y N N N N N -10.414 8.396 16.406 6.131 1.422 -1.375 C11 XJB 18
XJB C15 C19 C 0 1 N N N N N N -13.288 5.115 15.547 5.454 -1.657 2.042 C15 XJB 19
XJB C19 C20 C 0 1 Y N N N N N -6.936 8.116 13.320 -1.968 -2.867 0.628 C19 XJB 20
XJB C22 C21 C 0 1 Y N N N N N -8.905 8.133 11.948 -3.107 -2.971 -1.490 C22 XJB 21
XJB C23 C22 C 0 1 Y N N N N N -8.517 6.935 11.390 -3.681 -1.742 -1.245 C23 XJB 22
XJB C7 C23 C 0 1 Y N N N N N -8.587 6.876 16.205 3.782 1.438 -0.897 C7 XJB 23
XJB N1 N1 N 0 1 N N N N N N -7.175 3.576 7.959 -7.193 1.839 -0.165 N1 XJB 24
XJB N2 N2 N 0 1 Y N N N N N -6.345 2.668 9.911 -5.173 2.655 0.682 N2 XJB 25
XJB N3 N3 N 0 1 N N N N N N -5.528 1.792 11.877 -3.181 3.576 1.546 N3 XJB 26
XJB N4 N4 N 0 1 Y N N N N N -7.175 4.886 9.844 -5.300 0.475 -0.083 N4 XJB 27
XJB O1 O1 O 0 1 N N N N N N -6.120 4.150 13.238 -1.948 1.108 1.071 O1 XJB 28
XJB O2 O2 O 0 1 N N N N N N -8.165 5.623 15.860 2.749 1.155 -0.060 O2 XJB 29
XJB O3 O3 O 0 1 N N N N N N -12.895 4.236 14.757 5.751 -0.969 2.989 O3 XJB 30
XJB O4 O4 O 0 1 N N N N N N -14.435 5.134 16.030 5.365 -2.989 2.182 O4 XJB 31
XJB O5 O5 O 0 1 N N N N N N -8.371 9.902 13.527 -1.689 -4.750 -0.797 O5 XJB 32
XJB H1 H1 H 0 1 N N N N N N -5.706 6.390 13.152 -2.316 -1.116 1.798 H1 XJB 33
XJB H2 H2 H 0 1 N N N N N N -9.681 11.465 13.867 -1.725 -4.749 -2.863 H2 XJB 34
XJB H3 H3 H 0 1 N N N N N N -9.722 10.757 12.217 -1.510 -6.343 -2.101 H3 XJB 35
XJB H4 H4 H 0 1 N N N N N N -10.436 9.858 13.598 -3.103 -5.551 -2.073 H4 XJB 36
XJB H5 H5 H 0 1 N N N N N N -12.365 6.293 17.072 4.166 -1.251 0.390 H5 XJB 37
XJB H6 H6 H 0 1 N N N N N N -12.721 7.175 15.548 5.887 -1.411 -0.033 H6 XJB 38
XJB H7 H7 H 0 1 N N N N N N -10.564 5.078 15.900 4.649 0.886 1.552 H7 XJB 39
XJB H8 H8 H 0 1 N N N N N N -10.887 6.072 14.438 6.371 0.726 1.128 H8 XJB 40
XJB H9 H9 H 0 1 N N N N N N -7.288 3.247 16.234 0.467 0.032 0.735 H9 XJB 41
XJB H10 H10 H 0 1 N N N N N N -5.605 3.525 15.670 0.631 1.640 1.482 H10 XJB 42
XJB H11 H11 H 0 1 N N N N N N -6.393 5.450 16.959 1.219 0.965 -1.436 H11 XJB 43
XJB H12 H12 H 0 1 N N N N N N -6.189 5.915 15.236 1.383 2.572 -0.689 H12 XJB 44
XJB H13 H13 H 0 1 N N N N N N -6.663 7.652 16.738 2.525 2.260 -2.425 H13 XJB 45
XJB H14 H14 H 0 1 N N N N N N -7.538 9.875 17.333 4.398 2.772 -3.937 H14 XJB 46
XJB H15 H15 H 0 1 N N N N N N -8.073 4.015 13.957 -1.046 2.547 -0.104 H15 XJB 47
XJB H16 H16 H 0 1 N N N N N N -7.138 2.482 13.965 -1.210 0.940 -0.851 H16 XJB 48
XJB H17 H17 H 0 1 N N N N N N -9.933 10.352 17.129 6.705 2.236 -3.266 H17 XJB 49
XJB H18 H18 H 0 1 N N N N N N -11.467 8.621 16.318 7.143 1.184 -1.085 H18 XJB 50
XJB H19 H19 H 0 1 N N N N N N -6.318 8.583 14.073 -1.297 -3.308 1.351 H19 XJB 51
XJB H20 H20 H 0 1 N N N N N N -9.828 8.605 11.645 -3.327 -3.496 -2.408 H20 XJB 52
XJB H21 H21 H 0 1 N N N N N N -9.163 6.442 10.679 -4.348 -1.302 -1.972 H21 XJB 53
XJB H22 H22 H 0 1 N N N N N N -7.582 4.424 7.619 -7.706 1.113 -0.553 H22 XJB 54
XJB H23 H23 H 0 1 N N N N N N -6.337 3.381 7.450 -7.615 2.697 0.002 H23 XJB 55
XJB H24 H24 H 0 1 N N N N N N -5.384 1.028 11.248 -2.244 3.468 1.772 H24 XJB 56
XJB H25 H25 H 0 1 N N N N N N -4.650 2.080 12.258 -3.623 4.425 1.704 H25 XJB 57
XJB H26 H26 H 0 1 N N N N N N -14.930 4.392 15.702 5.547 -3.352 3.060 H26 XJB 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XJB N1 C1 SING N N 1
XJB C1 N4 DOUB Y N 2
XJB C1 N2 SING Y N 3
XJB N4 C16 SING Y N 4
XJB N2 C2 DOUB Y N 5
XJB C16 C17 SING N N 6
XJB C16 C3 DOUB Y N 7
XJB C2 N3 SING N N 8
XJB C2 C3 SING Y N 9
XJB C23 C17 DOUB Y N 10
XJB C23 C22 SING Y N 11
XJB C17 C18 SING Y N 12
XJB C3 O1 SING N N 13
XJB C22 C20 DOUB Y N 14
XJB C18 C19 DOUB Y N 15
XJB C20 C19 SING Y N 16
XJB C20 O5 SING N N 17
XJB O1 C4 SING N N 18
XJB C21 O5 SING N N 19
XJB C4 C5 SING N N 20
XJB O3 C15 DOUB N N 21
XJB C13 C14 SING N N 22
XJB C13 C12 SING N N 23
XJB C15 C14 SING N N 24
XJB C15 O4 SING N N 25
XJB C5 C6 SING N N 26
XJB O2 C6 SING N N 27
XJB O2 C7 SING N N 28
XJB C12 C7 DOUB Y N 29
XJB C12 C11 SING Y N 30
XJB C7 C8 SING Y N 31
XJB C11 C10 DOUB Y N 32
XJB C8 C9 DOUB Y N 33
XJB C10 C9 SING Y N 34
XJB C18 H1 SING N N 35
XJB C21 H2 SING N N 36
XJB C21 H3 SING N N 37
XJB C21 H4 SING N N 38
XJB C14 H5 SING N N 39
XJB C14 H6 SING N N 40
XJB C13 H7 SING N N 41
XJB C13 H8 SING N N 42
XJB C5 H9 SING N N 43
XJB C5 H10 SING N N 44
XJB C6 H11 SING N N 45
XJB C6 H12 SING N N 46
XJB C8 H13 SING N N 47
XJB C9 H14 SING N N 48
XJB C4 H15 SING N N 49
XJB C4 H16 SING N N 50
XJB C10 H17 SING N N 51
XJB C11 H18 SING N N 52
XJB C19 H19 SING N N 53
XJB C22 H20 SING N N 54
XJB C23 H21 SING N N 55
XJB N1 H22 SING N N 56
XJB N1 H23 SING N N 57
XJB N3 H24 SING N N 58
XJB N3 H25 SING N N 59
XJB O4 H26 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XJB SMILES ACDLabs 12.01 "Nc1nc(c2ccc(OC)cc2)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1"
XJB InChI InChI 1.06 "InChI=1S/C23H26N4O5/c1-30-17-10-7-16(8-11-17)20-21(22(24)27-23(25)26-20)32-14-4-13-31-18-6-3-2-5-15(18)9-12-19(28)29/h2-3,5-8,10-11H,4,9,12-14H2,1H3,(H,28,29)(H4,24,25,26,27)"
XJB InChIKey InChI 1.06 SKEGPFYLZNDHJX-UHFFFAOYSA-N
XJB SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)c2nc(N)nc(N)c2OCCCOc3ccccc3CCC(O)=O"
XJB SMILES CACTVS 3.385 "COc1ccc(cc1)c2nc(N)nc(N)c2OCCCOc3ccccc3CCC(O)=O"
XJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2c(c(nc(n2)N)N)OCCCOc3ccccc3CCC(=O)O"
XJB SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2c(c(nc(n2)N)N)OCCCOc3ccccc3CCC(=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XJB "SYSTEMATIC NAME" ACDLabs 12.01 "3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid"
XJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-(4-methoxyphenyl)pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XJB 'Create component' 2022-11-22 RCSB
XJB 'Initial release' 2023-12-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XJB C16 C 14.691 0.233 1
XJB C18 C 15.990 2.482 2
XJB C21 C 15.990 6.982 3
XJB C20 C 14.691 4.732 4
XJB C17 C 14.691 1.732 5
XJB C14 C 6.897 -4.268 6
XJB C13 C 6.897 -2.768 7
XJB C5 C 9.495 0.233 8
XJB C2 C 13.392 -2.018 9
XJB C6 C 8.196 -0.517 10
XJB C3 C 13.392 -0.517 11
XJB C8 C 4.299 0.233 12
XJB C12 C 5.598 -2.018 13
XJB C9 C 3.000 -0.517 14
XJB C4 C 10.794 -0.517 15
XJB C1 C 15.990 -2.018 16
XJB C10 C 3.000 -2.018 17
XJB C11 C 4.299 -2.768 18
XJB C15 C 5.598 -5.018 19
XJB C19 C 15.990 3.982 20
XJB C22 C 13.392 3.982 21
XJB C23 C 13.392 2.482 22
XJB C7 C 5.598 -0.517 23
XJB N1 N 17.290 -2.768 24
XJB N2 N 14.691 -2.768 25
XJB N3 N 12.093 -2.768 26
XJB N4 N 15.990 -0.517 27
XJB O1 O 12.093 0.233 28
XJB O2 O 6.897 0.233 29
XJB O3 O 5.598 -6.518 30
XJB O4 O 4.299 -4.268 31
XJB O5 O 14.691 6.232 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XJB N1 C1 SINGLE NONE 1
XJB C1 N4 DOUBLE NONE 2
XJB C1 N2 SINGLE NONE 3
XJB N4 C16 SINGLE NONE 4
XJB N2 C2 DOUBLE NONE 5
XJB C16 C17 SINGLE NONE 6
XJB C16 C3 DOUBLE NONE 7
XJB C2 N3 SINGLE NONE 8
XJB C2 C3 SINGLE NONE 9
XJB C23 C17 SINGLE NONE 10
XJB C23 C22 DOUBLE NONE 11
XJB C17 C18 DOUBLE NONE 12
XJB C3 O1 SINGLE NONE 13
XJB C22 C20 SINGLE NONE 14
XJB C18 C19 SINGLE NONE 15
XJB C20 C19 DOUBLE NONE 16
XJB C20 O5 SINGLE NONE 17
XJB O1 C4 SINGLE NONE 18
XJB C21 O5 SINGLE NONE 19
XJB C4 C5 SINGLE NONE 20
XJB O3 C15 DOUBLE NONE 21
XJB C13 C14 SINGLE NONE 22
XJB C13 C12 SINGLE NONE 23
XJB C15 C14 SINGLE NONE 24
XJB C15 O4 SINGLE NONE 25
XJB C5 C6 SINGLE NONE 26
XJB O2 C6 SINGLE NONE 27
XJB O2 C7 SINGLE NONE 28
XJB C12 C7 SINGLE NONE 29
XJB C12 C11 DOUBLE NONE 30
XJB C7 C8 DOUBLE NONE 31
XJB C11 C10 SINGLE NONE 32
XJB C8 C9 SINGLE NONE 33
XJB C10 C9 DOUBLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XJB MurckoScaffold S1 scaffold c1ccc(OCCCOc2cncnc2-c2ccccc2)cc1 InChI=1S/C19H18N2O2/c1-3-8-16(9-4-1)19-18(14-20-15-21-19)23-13-7-12-22-17-10-5-2-6-11-17/h1-6,8-11,14-15H,7,12-13H2 OMRIQSFXCLRDOK-UHFFFAOYSA-N
XJB phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XJB pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XJB C16 S1 1
XJB C18 S1 1
XJB C20 S1 1
XJB C17 S1 1
XJB C5 S1 1
XJB C2 S1 1
XJB C6 S1 1
XJB C3 S1 1
XJB C8 S1 1
XJB C12 S1 1
XJB C9 S1 1
XJB C4 S1 1
XJB C1 S1 1
XJB C10 S1 1
XJB C11 S1 1
XJB C19 S1 1
XJB C22 S1 1
XJB C23 S1 1
XJB C7 S1 1
XJB N2 S1 1
XJB N4 S1 1
XJB O1 S1 1
XJB O2 S1 1
XJB C18 F1 1
XJB C17 F1 1
XJB C23 F1 1
XJB C22 F1 1
XJB C20 F1 1
XJB C19 F1 1
XJB C8 F1 2
XJB C7 F1 2
XJB C12 F1 2
XJB C11 F1 2
XJB C10 F1 2
XJB C9 F1 2
XJB C3 F2 1
XJB C16 F2 1
XJB N4 F2 1
XJB C1 F2 1
XJB N2 F2 1
XJB C2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XJB
_pdbe_chem_comp_rdkit_properties.exactmw 438.190
_pdbe_chem_comp_rdkit_properties.amw 438.484
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 58
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.261
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 222.364
_pdbe_chem_comp_rdkit_properties.tpsa 142.810
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.599
_pdbe_chem_comp_rdkit_properties.CrippenMR 115.785
_pdbe_chem_comp_rdkit_properties.chi0v 15.330
_pdbe_chem_comp_rdkit_properties.chi1v 7.975
_pdbe_chem_comp_rdkit_properties.chi2v 3.128
_pdbe_chem_comp_rdkit_properties.chi3v 3.128
_pdbe_chem_comp_rdkit_properties.chi4v 1.914
_pdbe_chem_comp_rdkit_properties.chi0n 41.330
_pdbe_chem_comp_rdkit_properties.chi1n 20.672
_pdbe_chem_comp_rdkit_properties.chi2n 3.128
_pdbe_chem_comp_rdkit_properties.chi3n 3.128
_pdbe_chem_comp_rdkit_properties.chi4n 1.914
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.010
_pdbe_chem_comp_rdkit_properties.kappa1 6.504
_pdbe_chem_comp_rdkit_properties.kappa2 10.851
_pdbe_chem_comp_rdkit_properties.kappa3 6.005
_pdbe_chem_comp_rdkit_properties.Phi 2.205
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XJB UniChem PDBe XJB
XJB UniChem PubChem 169452177
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XJB C16 2.801 -1.580 -0.343 ETKDGv3 1
XJB C18 3.418 -0.402 1.711 ETKDGv3 2
XJB C21 6.184 3.687 1.893 ETKDGv3 3
XJB C20 4.795 1.622 1.764 ETKDGv3 4
XJB C17 3.481 -0.476 0.371 ETKDGv3 5
XJB C14 -6.260 1.428 -0.501 ETKDGv3 6
XJB C13 -5.446 0.244 -1.037 ETKDGv3 7
XJB C5 -0.396 0.416 -1.389 ETKDGv3 8
XJB C2 1.555 -2.578 -2.181 ETKDGv3 9
XJB C6 -1.290 1.466 -0.724 ETKDGv3 10
XJB C3 2.110 -1.391 -1.490 ETKDGv3 11
XJB C8 -2.427 -0.501 1.197 ETKDGv3 12
XJB C12 -4.584 -0.378 0.036 ETKDGv3 13
XJB C9 -3.018 -1.507 2.101 ETKDGv3 14
XJB C4 1.068 0.863 -1.397 ETKDGv3 15
XJB C1 2.387 -3.936 -0.409 ETKDGv3 16
XJB C10 -4.293 -1.878 1.951 ETKDGv3 17
XJB C11 -5.113 -1.284 0.879 ETKDGv3 18
XJB C15 -5.378 2.579 -0.123 ETKDGv3 19
XJB C19 4.095 0.696 2.433 ETKDGv3 20
XJB C22 4.893 1.527 0.283 ETKDGv3 21
XJB C23 4.277 0.535 -0.371 ETKDGv3 22
XJB C7 -3.163 0.045 0.205 ETKDGv3 23
XJB N1 2.512 -5.239 0.157 ETKDGv3 24
XJB N2 1.694 -3.758 -1.652 ETKDGv3 25
XJB N3 0.852 -2.439 -3.417 ETKDGv3 26
XJB N4 2.907 -2.910 0.198 ETKDGv3 27
XJB O1 1.888 -0.118 -2.033 ETKDGv3 28
XJB O2 -2.644 1.012 -0.676 ETKDGv3 29
XJB O3 -5.088 2.783 1.086 ETKDGv3 30
XJB O4 -4.847 3.399 -1.113 ETKDGv3 31
XJB O5 5.416 2.648 2.489 ETKDGv3 32
XJB H1 2.854 -1.130 2.281 ETKDGv3 33
XJB H2 7.056 3.258 1.356 ETKDGv3 34
XJB H3 6.556 4.365 2.689 ETKDGv3 35
XJB H4 5.554 4.274 1.192 ETKDGv3 36
XJB H5 -6.964 1.768 -1.290 ETKDGv3 37
XJB H6 -6.867 1.108 0.374 ETKDGv3 38
XJB H7 -6.150 -0.520 -1.436 ETKDGv3 39
XJB H8 -4.824 0.571 -1.898 ETKDGv3 40
XJB H9 -0.737 0.255 -2.435 ETKDGv3 41
XJB H10 -0.479 -0.548 -0.847 ETKDGv3 42
XJB H11 -1.261 2.396 -1.329 ETKDGv3 43
XJB H12 -0.930 1.724 0.295 ETKDGv3 44
XJB H13 -1.397 -0.221 1.361 ETKDGv3 45
XJB H14 -2.416 -1.941 2.889 ETKDGv3 46
XJB H15 1.413 1.047 -0.359 ETKDGv3 47
XJB H16 1.160 1.815 -1.963 ETKDGv3 48
XJB H17 -4.727 -2.612 2.616 ETKDGv3 49
XJB H18 -6.148 -1.588 0.784 ETKDGv3 50
XJB H19 4.016 0.747 3.511 ETKDGv3 51
XJB H20 5.467 2.250 -0.280 ETKDGv3 52
XJB H21 4.377 0.468 -1.447 ETKDGv3 53
XJB H22 3.016 -5.380 1.061 ETKDGv3 54
XJB H23 2.098 -6.065 -0.329 ETKDGv3 55
XJB H24 0.453 -3.278 -3.894 ETKDGv3 56
XJB H25 0.728 -1.505 -3.865 ETKDGv3 57
XJB H26 -4.232 4.168 -0.876 ETKDGv3 58
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