data_XJH
#
_chem_comp.id XJH
_chem_comp.name 6-{[(3R,4R)-4-(3-phenoxyphenoxy)pyrrolidin-3-yl]methyl}pyridin-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H23 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-06-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 361.437
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XJH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3N2R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XJH N01 N01 N 0 1 Y N N N N N 13.285 0.480 24.063 -4.891 0.975 -0.772 N01 XJH 1
XJH C02 C02 C 0 1 Y N N N N N 14.500 0.202 23.489 -6.138 1.415 -0.838 C02 XJH 2
XJH N02 N02 N 0 1 N N N N N N 15.273 -0.817 23.924 -6.764 1.532 -2.074 N02 XJH 3
XJH C03 C03 C 0 1 Y N N N N N 14.973 0.972 22.423 -6.829 1.761 0.319 C03 XJH 4
XJH C04 C04 C 0 1 Y N N N N N 14.182 2.020 21.951 -6.195 1.640 1.542 C04 XJH 5
XJH C05 C05 C 0 1 Y N N N N N 12.958 2.283 22.548 -4.887 1.174 1.567 C05 XJH 6
XJH C06 C06 C 0 1 Y N N N N N 12.503 1.515 23.619 -4.262 0.849 0.380 C06 XJH 7
XJH C07 C07 C 0 1 N N N N N N 11.127 1.835 24.224 -2.842 0.343 0.401 C07 XJH 8
XJH "N1'" "N1'" N 0 1 N N N N N N 9.084 -1.054 23.144 -2.750 -3.316 0.309 "N1'" XJH 9
XJH O10 O10 O 0 1 N N N N N N 8.074 1.757 24.754 -0.446 -0.586 0.295 O10 XJH 10
XJH C11 C11 C 0 1 Y N N N N N 6.810 1.839 25.357 0.872 -0.640 -0.033 C11 XJH 11
XJH C12 C12 C 0 1 Y N N N N N 5.890 0.779 25.211 1.309 -1.527 -1.006 C12 XJH 12
XJH C13 C13 C 0 1 Y N N N N N 4.625 0.807 25.792 2.649 -1.582 -1.339 C13 XJH 13
XJH C14 C14 C 0 1 Y N N N N N 4.253 1.923 26.544 3.556 -0.755 -0.705 C14 XJH 14
XJH C15 C15 C 0 1 Y N N N N N 5.130 3.009 26.718 3.123 0.134 0.269 C15 XJH 15
XJH C16 C16 C 0 1 Y N N N N N 6.414 2.958 26.119 1.778 0.195 0.601 C16 XJH 16
XJH "C2'" "C2'" C 0 1 N N N N N N 10.228 -0.188 22.973 -3.553 -2.077 0.466 "C2'" XJH 17
XJH O20 O20 O 0 1 N N N N N N 4.711 4.105 27.471 4.015 0.947 0.893 O20 XJH 18
XJH C21 C21 C 0 1 Y N N N N N 3.379 4.506 27.473 5.303 0.932 0.460 C21 XJH 19
XJH C22 C22 C 0 1 Y N N N N N 2.500 4.083 28.486 5.626 1.465 -0.781 C22 XJH 20
XJH C23 C23 C 0 1 Y N N N N N 1.157 4.481 28.482 6.936 1.448 -1.219 C23 XJH 21
XJH C24 C24 C 0 1 Y N N N N N 0.673 5.308 27.461 7.925 0.901 -0.423 C24 XJH 22
XJH C25 C25 C 0 1 Y N N N N N 1.536 5.735 26.445 7.607 0.369 0.813 C25 XJH 23
XJH C26 C26 C 0 1 Y N N N N N 2.881 5.333 26.452 6.299 0.389 1.259 C26 XJH 24
XJH "C3'" "C3'" C 0 1 N N R N N N 10.310 0.548 24.306 -2.770 -1.004 -0.321 "C3'" XJH 25
XJH "C4'" "C4'" C 0 1 N N R N N N 8.882 0.561 24.889 -1.315 -1.515 -0.357 "C4'" XJH 26
XJH "C5'" "C5'" C 0 1 N N N N N N 8.203 -0.629 24.219 -1.341 -2.854 0.411 "C5'" XJH 27
XJH HN02 HN02 H 0 0 N N N N N N 14.816 -1.283 24.682 -6.286 1.291 -2.884 HN02 XJH 28
XJH HN0A HN0A H 0 0 N N N N N N 15.422 -1.464 23.177 -7.677 1.854 -2.127 HN0A XJH 29
XJH H03 H03 H 0 1 N N N N N N 15.932 0.760 21.973 -7.846 2.120 0.263 H03 XJH 30
XJH H04 H04 H 0 1 N N N N N N 14.522 2.625 21.123 -6.705 1.901 2.457 H04 XJH 31
XJH H05 H05 H 0 1 N N N N N N 12.349 3.094 22.178 -4.364 1.067 2.506 H05 XJH 32
XJH H07 H07 H 0 1 N N N N N N 11.255 2.257 25.232 -2.194 1.060 -0.102 H07 XJH 33
XJH H07A H07A H 0 0 N N N N N N 10.604 2.565 23.588 -2.516 0.220 1.434 H07A XJH 34
XJH "HN1'" "HN1'" H 0 0 N N N N N N 8.561 -1.055 22.292 -2.965 -3.981 1.037 "HN1'" XJH 35
XJH H12 H12 H 0 1 N N N N N N 6.177 -0.084 24.628 0.603 -2.175 -1.503 H12 XJH 36
XJH H13 H13 H 0 1 N N N N N N 3.943 -0.021 25.663 2.988 -2.273 -2.097 H13 XJH 37
XJH H14 H14 H 0 1 N N N N N N 3.275 1.953 27.000 4.603 -0.800 -0.967 H14 XJH 38
XJH H16 H16 H 0 1 N N N N N N 7.096 3.785 26.248 1.439 0.889 1.356 H16 XJH 39
XJH "H2'" "H2'" H 0 1 N N N N N N 11.144 -0.762 22.770 -4.547 -2.211 0.039 "H2'" XJH 40
XJH "H2'A" "H2'A" H 0 0 N N N N N N 10.087 0.509 22.133 -3.625 -1.800 1.518 "H2'A" XJH 41
XJH H22 H22 H 0 1 N N N N N N 2.865 3.444 29.276 4.853 1.891 -1.403 H22 XJH 42
XJH H23 H23 H 0 1 N N N N N N 0.494 4.150 29.267 7.187 1.862 -2.184 H23 XJH 43
XJH H24 H24 H 0 1 N N N N N N -0.362 5.615 27.457 8.949 0.889 -0.767 H24 XJH 44
XJH H25 H25 H 0 1 N N N N N N 1.167 6.374 25.656 8.381 -0.058 1.433 H25 XJH 45
XJH H26 H26 H 0 1 N N N N N N 3.541 5.663 25.663 6.051 -0.026 2.224 H26 XJH 46
XJH "H3'" "H3'" H 0 1 N N N N N N 10.923 0.039 25.065 -3.166 -0.912 -1.332 "H3'" XJH 47
XJH "H4'" "H4'" H 0 1 N N N N N N 8.974 0.517 25.984 -0.995 -1.674 -1.387 "H4'" XJH 48
XJH "H5'" "H5'" H 0 1 N N N N N N 7.221 -0.337 23.819 -1.067 -2.699 1.454 "H5'" XJH 49
XJH "H5'A" "H5'A" H 0 0 N N N N N N 8.056 -1.445 24.942 -0.670 -3.574 -0.057 "H5'A" XJH 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XJH C02 N01 DOUB Y N 1
XJH C06 N01 SING Y N 2
XJH C03 C02 SING Y N 3
XJH C02 N02 SING N N 4
XJH N02 HN02 SING N N 5
XJH N02 HN0A SING N N 6
XJH C04 C03 DOUB Y N 7
XJH C03 H03 SING N N 8
XJH C04 C05 SING Y N 9
XJH C04 H04 SING N N 10
XJH C05 C06 DOUB Y N 11
XJH C05 H05 SING N N 12
XJH C06 C07 SING N N 13
XJH C07 "C3'" SING N N 14
XJH C07 H07 SING N N 15
XJH C07 H07A SING N N 16
XJH "C2'" "N1'" SING N N 17
XJH "N1'" "C5'" SING N N 18
XJH "N1'" "HN1'" SING N N 19
XJH O10 "C4'" SING N N 20
XJH O10 C11 SING N N 21
XJH C12 C11 DOUB Y N 22
XJH C11 C16 SING Y N 23
XJH C12 C13 SING Y N 24
XJH C12 H12 SING N N 25
XJH C13 C14 DOUB Y N 26
XJH C13 H13 SING N N 27
XJH C14 C15 SING Y N 28
XJH C14 H14 SING N N 29
XJH C16 C15 DOUB Y N 30
XJH C15 O20 SING N N 31
XJH C16 H16 SING N N 32
XJH "C2'" "C3'" SING N N 33
XJH "C2'" "H2'" SING N N 34
XJH "C2'" "H2'A" SING N N 35
XJH O20 C21 SING N N 36
XJH C26 C21 DOUB Y N 37
XJH C21 C22 SING Y N 38
XJH C23 C22 DOUB Y N 39
XJH C22 H22 SING N N 40
XJH C24 C23 SING Y N 41
XJH C23 H23 SING N N 42
XJH C25 C24 DOUB Y N 43
XJH C24 H24 SING N N 44
XJH C25 C26 SING Y N 45
XJH C25 H25 SING N N 46
XJH C26 H26 SING N N 47
XJH "C3'" "C4'" SING N N 48
XJH "C3'" "H3'" SING N N 49
XJH "C5'" "C4'" SING N N 50
XJH "C4'" "H4'" SING N N 51
XJH "C5'" "H5'" SING N N 52
XJH "C5'" "H5'A" SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XJH SMILES ACDLabs 12.01 O(c2cc(Oc1ccccc1)ccc2)C3C(CNC3)Cc4nc(N)ccc4
XJH SMILES_CANONICAL CACTVS 3.370 Nc1cccc(C[C@@H]2CNC[C@@H]2Oc3cccc(Oc4ccccc4)c3)n1
XJH SMILES CACTVS 3.370 Nc1cccc(C[CH]2CNC[CH]2Oc3cccc(Oc4ccccc4)c3)n1
XJH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)Oc2cccc(c2)O[C@H]3CNC[C@H]3Cc4cccc(n4)N
XJH SMILES "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)Oc2cccc(c2)OC3CNCC3Cc4cccc(n4)N
XJH InChI InChI 1.03 InChI=1S/C22H23N3O2/c23-22-11-4-6-17(25-22)12-16-14-24-15-21(16)27-20-10-5-9-19(13-20)26-18-7-2-1-3-8-18/h1-11,13,16,21,24H,12,14-15H2,(H2,23,25)/t16-,21+/m1/s1
XJH InChIKey InChI 1.03 MKBQBMWQPUXDQQ-IERDGZPVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XJH "SYSTEMATIC NAME" ACDLabs 12.01 6-{[(3R,4R)-4-(3-phenoxyphenoxy)pyrrolidin-3-yl]methyl}pyridin-2-amine
XJH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 6-[[(3R,4R)-4-(3-phenoxyphenoxy)pyrrolidin-3-yl]methyl]pyridin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XJH 'Create component' 2010-06-08 RCSB
XJH 'Modify aromatic_flag' 2011-06-04 RCSB
XJH 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XJH N01 N 11.466 -5.289 1
XJH C02 C 12.765 -4.539 2
XJH N02 N 14.065 -5.289 3
XJH C03 C 12.765 -3.039 4
XJH C04 C 11.466 -2.289 5
XJH C05 C 10.167 -3.039 6
XJH C06 C 10.167 -4.539 7
XJH C07 C 8.868 -5.289 8
XJH "N1'" N 5.195 -4.035 9
XJH O10 O 8.527 -2.044 10
XJH C11 C 8.215 -0.577 11
XJH C12 C 9.330 0.427 12
XJH C13 C 9.018 1.894 13
XJH C14 C 7.592 2.358 14
XJH C15 C 6.477 1.354 15
XJH C16 C 6.789 -0.113 16
XJH "C2'" C 6.199 -5.149 17
XJH O20 O 5.050 1.818 18
XJH C21 C 4.739 3.285 19
XJH C22 C 3.312 3.748 20
XJH C23 C 3.000 5.216 21
XJH C24 C 4.115 6.219 22
XJH C25 C 5.541 5.756 23
XJH C26 C 5.853 4.288 24
XJH "C3'" C 7.569 -4.539 25
XJH "C4'" C 7.412 -3.047 26
XJH "C5'" C 5.945 -2.736 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XJH C02 N01 DOUBLE NONE 1
XJH C06 N01 SINGLE NONE 2
XJH C03 C02 SINGLE NONE 3
XJH C02 N02 SINGLE NONE 4
XJH C04 C03 DOUBLE NONE 5
XJH C04 C05 SINGLE NONE 6
XJH C05 C06 DOUBLE NONE 7
XJH C06 C07 SINGLE NONE 8
XJH "C3'" C07 SINGLE BEGINDASH 9
XJH "C2'" "N1'" SINGLE NONE 10
XJH "N1'" "C5'" SINGLE NONE 11
XJH "C4'" O10 SINGLE BEGINDASH 12
XJH O10 C11 SINGLE NONE 13
XJH C12 C11 DOUBLE NONE 14
XJH C11 C16 SINGLE NONE 15
XJH C12 C13 SINGLE NONE 16
XJH C13 C14 DOUBLE NONE 17
XJH C14 C15 SINGLE NONE 18
XJH C16 C15 DOUBLE NONE 19
XJH C15 O20 SINGLE NONE 20
XJH "C2'" "C3'" SINGLE NONE 21
XJH O20 C21 SINGLE NONE 22
XJH C26 C21 SINGLE NONE 23
XJH C21 C22 DOUBLE NONE 24
XJH C23 C22 SINGLE NONE 25
XJH C24 C23 DOUBLE NONE 26
XJH C25 C24 SINGLE NONE 27
XJH C25 C26 DOUBLE NONE 28
XJH "C3'" "C4'" SINGLE NONE 29
XJH "C5'" "C4'" SINGLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XJH MurckoScaffold S1 scaffold 'c1ccc(Oc2cccc(O[C@H]3CNC[C@H]3Cc3ccccn3)c2)cc1' InChI=1S/C22H22N2O2/c1-2-8-19(9-3-1)25-20-10-6-11-21(14-20)26-22-16-23-15-17(22)13-18-7-4-5-12-24-18/h1-12,14,17,22-23H,13,15-16H2/t17-,22+/m1/s1 XVYBDZZEZXAGNM-VGSWGCGISA-N
XJH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XJH pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XJH N01 S1 1
XJH C02 S1 1
XJH C03 S1 1
XJH C04 S1 1
XJH C05 S1 1
XJH C06 S1 1
XJH C07 S1 1
XJH "N1'" S1 1
XJH O10 S1 1
XJH C11 S1 1
XJH C12 S1 1
XJH C13 S1 1
XJH C14 S1 1
XJH C15 S1 1
XJH C16 S1 1
XJH "C2'" S1 1
XJH O20 S1 1
XJH C21 S1 1
XJH C22 S1 1
XJH C23 S1 1
XJH C24 S1 1
XJH C25 S1 1
XJH C26 S1 1
XJH "C3'" S1 1
XJH "C4'" S1 1
XJH "C5'" S1 1
XJH C11 F1 1
XJH C12 F1 1
XJH C13 F1 1
XJH C14 F1 1
XJH C15 F1 1
XJH C16 F1 1
XJH C21 F1 2
XJH C26 F1 2
XJH C25 F1 2
XJH C24 F1 2
XJH C23 F1 2
XJH C22 F1 2
XJH C02 F2 1
XJH C03 F2 1
XJH C04 F2 1
XJH C05 F2 1
XJH C06 F2 1
XJH N01 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XJH
_pdbe_chem_comp_rdkit_properties.exactmw 361.179
_pdbe_chem_comp_rdkit_properties.amw 361.445
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.227
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 191.189
_pdbe_chem_comp_rdkit_properties.tpsa 69.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.843
_pdbe_chem_comp_rdkit_properties.CrippenMR 103.167
_pdbe_chem_comp_rdkit_properties.chi0v 13.158
_pdbe_chem_comp_rdkit_properties.chi1v 7.185
_pdbe_chem_comp_rdkit_properties.chi2v 2.833
_pdbe_chem_comp_rdkit_properties.chi3v 2.833
_pdbe_chem_comp_rdkit_properties.chi4v 1.792
_pdbe_chem_comp_rdkit_properties.chi0n 36.158
_pdbe_chem_comp_rdkit_properties.chi1n 18.526
_pdbe_chem_comp_rdkit_properties.chi2n 2.833
_pdbe_chem_comp_rdkit_properties.chi3n 2.833
_pdbe_chem_comp_rdkit_properties.chi4n 1.792
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.050
_pdbe_chem_comp_rdkit_properties.kappa1 5.056
_pdbe_chem_comp_rdkit_properties.kappa2 8.099
_pdbe_chem_comp_rdkit_properties.kappa3 4.570
_pdbe_chem_comp_rdkit_properties.Phi 1.517
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XJH UniChem ChEMBL CHEMBL1222608
XJH UniChem PDBe XJH
XJH UniChem ZINC ZINC000058591223
XJH UniChem PubChem 46846307
XJH UniChem BindingDb 50325180
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XJH N01 -4.081 1.460 0.857 ETKDGv3 1
XJH C02 -4.968 2.174 0.223 ETKDGv3 2
XJH N02 -6.047 2.770 0.942 ETKDGv3 3
XJH C03 -4.850 2.364 -1.239 ETKDGv3 4
XJH C04 -3.831 1.796 -1.892 ETKDGv3 5
XJH C05 -2.842 0.990 -1.153 ETKDGv3 6
XJH C06 -2.974 0.837 0.176 ETKDGv3 7
XJH C07 -1.995 0.008 0.960 ETKDGv3 8
XJH "N1'" -3.226 -2.436 2.735 ETKDGv3 9
XJH O10 0.115 -1.774 1.537 ETKDGv3 10
XJH C11 1.021 -1.620 0.474 ETKDGv3 11
XJH C12 0.793 -2.111 -0.761 ETKDGv3 12
XJH C13 1.786 -1.909 -1.835 ETKDGv3 13
XJH C14 2.911 -1.229 -1.593 ETKDGv3 14
XJH C15 3.166 -0.665 -0.242 ETKDGv3 15
XJH C16 2.274 -0.877 0.736 ETKDGv3 16
XJH "C2'" -3.521 -1.992 1.371 ETKDGv3 17
XJH O20 4.339 0.042 0.053 ETKDGv3 18
XJH C21 5.053 0.828 -0.861 ETKDGv3 19
XJH C22 6.375 0.980 -0.693 ETKDGv3 20
XJH C23 7.159 1.810 -1.632 ETKDGv3 21
XJH C24 6.548 2.430 -2.648 ETKDGv3 22
XJH C25 5.088 2.294 -2.826 ETKDGv3 23
XJH C26 4.376 1.540 -1.979 ETKDGv3 24
XJH "C3'" -2.216 -1.510 0.737 ETKDGv3 25
XJH "C4'" -1.180 -2.378 1.449 ETKDGv3 26
XJH "C5'" -1.771 -2.588 2.835 ETKDGv3 27
XJH HN02 -6.764 3.344 0.446 ETKDGv3 28
XJH HN0A -6.133 2.636 1.974 ETKDGv3 29
XJH H03 -5.579 2.956 -1.777 ETKDGv3 30
XJH H04 -3.731 1.925 -2.962 ETKDGv3 31
XJH H05 -2.021 0.528 -1.687 ETKDGv3 32
XJH H07 -0.972 0.299 0.642 ETKDGv3 33
XJH H07A -2.083 0.253 2.042 ETKDGv3 34
XJH "HN1'" -3.527 -1.683 3.398 ETKDGv3 35
XJH H12 -0.103 -2.666 -0.995 ETKDGv3 36
XJH H13 1.604 -2.323 -2.818 ETKDGv3 37
XJH H14 3.643 -1.113 -2.381 ETKDGv3 38
XJH H16 2.459 -0.486 1.729 ETKDGv3 39
XJH "H2'" -3.904 -2.863 0.796 ETKDGv3 40
XJH "H2'A" -4.318 -1.217 1.365 ETKDGv3 41
XJH H22 6.880 0.484 0.127 ETKDGv3 42
XJH H23 8.227 1.913 -1.496 ETKDGv3 43
XJH H24 7.120 3.038 -3.337 ETKDGv3 44
XJH H25 4.594 2.815 -3.637 ETKDGv3 45
XJH H26 3.303 1.473 -2.102 ETKDGv3 46
XJH "H3'" -2.214 -1.730 -0.353 ETKDGv3 47
XJH "H4'" -1.107 -3.371 0.951 ETKDGv3 48
XJH "H5'" -1.527 -3.605 3.211 ETKDGv3 49
XJH "H5'A" -1.352 -1.841 3.549 ETKDGv3 50
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