data_XRB
#
_chem_comp.id XRB
_chem_comp.name
5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H27 N7 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-12-06
_chem_comp.pdbx_modified_date 2023-10-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 529.613
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XRB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FE8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XRB N N1 N 0 1 N N N N N N 46.337 -28.471 42.099 -9.790 4.573 1.239 N XRB 1
XRB C C1 C 0 1 N N N N N N 49.913 -23.344 37.316 -5.756 -1.771 -2.503 C XRB 2
XRB O O1 O 0 1 N N N N N N 52.524 -24.441 36.980 -4.808 -2.718 -0.019 O XRB 3
XRB C1 C2 C 0 1 Y N N N N N 50.346 -24.643 37.944 -6.087 -1.095 -1.197 C1 XRB 4
XRB C10 C3 C 0 1 Y N N N N N 51.621 -25.170 37.743 -5.590 -1.608 -0.005 C10 XRB 5
XRB C11 C4 C 0 1 Y N N N N N 52.608 -24.727 35.647 -3.468 -2.551 -0.136 C11 XRB 6
XRB C12 C5 C 0 1 Y N N N N N 53.275 -23.794 34.852 -2.617 -3.655 -0.156 C12 XRB 7
XRB C13 C6 C 0 1 Y N N N N N 53.365 -24.143 33.520 -1.257 -3.437 -0.277 C13 XRB 8
XRB C14 C7 C 0 1 Y N N N N N 52.245 -26.078 33.881 -1.639 -1.166 -0.346 C14 XRB 9
XRB C15 C8 C 0 1 Y N N N N N 51.274 -28.433 33.938 0.257 0.323 -0.450 C15 XRB 10
XRB C16 C9 C 0 1 Y N N N N N 50.878 -28.482 35.271 0.802 1.352 -1.196 C16 XRB 11
XRB C17 C10 C 0 1 Y N N N N N 50.421 -29.676 35.812 2.184 1.560 -1.191 C17 XRB 12
XRB C18 C11 C 0 1 N N N N N N 50.026 -29.715 37.197 2.756 2.623 -1.960 C18 XRB 13
XRB C19 C12 C 0 1 Y N N N N N 50.350 -30.835 35.024 3.009 0.720 -0.426 C19 XRB 14
XRB C2 C13 C 0 1 Y N N N N N 49.475 -25.365 38.755 -6.876 0.034 -1.188 C2 XRB 15
XRB C20 C14 C 0 1 N N N N N N 48.429 -32.286 35.332 4.867 1.195 0.946 C20 XRB 16
XRB C21 C15 C 0 1 N N N N N N 47.851 -33.168 36.416 6.349 1.584 0.892 C21 XRB 17
XRB C22 C16 C 0 1 N N N N N N 49.461 -36.144 38.576 7.818 -1.564 1.791 C22 XRB 18
XRB C23 C17 C 0 1 N N N N N N 49.803 -34.459 35.677 6.579 0.100 -1.137 C23 XRB 19
XRB C24 C18 C 0 1 N N N N N N 50.657 -33.218 35.497 5.089 -0.230 -1.003 C24 XRB 20
XRB C25 C19 C 0 1 Y N N N N N 50.755 -30.775 33.695 2.446 -0.309 0.317 C25 XRB 21
XRB C26 C20 C 0 1 Y N N N N N 51.213 -29.583 33.158 1.081 -0.506 0.306 C26 XRB 22
XRB C3 C21 C 0 1 Y N N N N N 49.852 -26.572 39.349 -7.182 0.660 0.025 C3 XRB 23
XRB C4 C22 C 0 1 N N N N N N 48.939 -27.316 40.222 -8.025 1.865 0.041 C4 XRB 24
XRB C5 C23 C 0 1 N N N N N N 47.701 -26.960 40.530 -8.319 2.468 1.212 C5 XRB 25
XRB C6 C24 C 0 1 N N N N N N 46.930 -27.787 41.399 -9.139 3.642 1.227 C6 XRB 26
XRB C7 C25 C 0 1 Y N N N N N 51.137 -27.060 39.107 -6.685 0.136 1.224 C7 XRB 27
XRB C8 C26 C 0 1 Y N N N N N 52.042 -26.375 38.305 -5.892 -0.990 1.203 C8 XRB 28
XRB C9 C27 C 0 1 N N N N N N 53.424 -26.929 38.071 -5.351 -1.552 2.492 C9 XRB 29
XRB N1 N2 N 0 1 Y N N N N N 52.865 -25.273 33.006 -0.806 -2.196 -0.369 N1 XRB 30
XRB N2 N3 N 0 1 N N N N N N 51.727 -27.228 33.356 -1.129 0.118 -0.450 N2 XRB 31
XRB N3 N4 N 0 1 N N N N N N 49.705 -29.784 38.291 3.209 3.467 -2.571 N3 XRB 32
XRB N4 N5 N 0 1 N N N N N N 49.838 -32.008 35.605 4.387 0.918 -0.414 N4 XRB 33
XRB N5 N6 N 0 1 N N N N N N 48.828 -34.221 36.758 7.083 0.529 0.176 N5 XRB 34
XRB N6 N7 N 0 1 Y N N N N N 52.086 -25.859 35.197 -2.948 -1.334 -0.237 N6 XRB 35
XRB O1 O2 O 0 1 N N N N N N 47.110 -35.113 38.273 8.957 0.847 1.696 O1 XRB 36
XRB O2 O3 O 0 1 N N N N N N 48.012 -36.520 36.469 9.182 -0.608 -0.292 O2 XRB 37
XRB S S1 S 0 1 N N N N N N 48.223 -35.543 37.490 8.440 -0.156 0.832 S XRB 38
XRB H1 H1 H 0 1 N N N N N N 49.463 -23.544 36.332 -4.838 -1.347 -2.909 H1 XRB 39
XRB H2 H2 H 0 1 N N N N N N 49.173 -22.852 37.965 -5.620 -2.839 -2.334 H2 XRB 40
XRB H3 H3 H 0 1 N N N N N N 50.787 -22.687 37.193 -6.572 -1.616 -3.209 H3 XRB 41
XRB H4 H4 H 0 1 N N N N N N 53.686 -22.876 35.246 -3.011 -4.657 -0.080 H4 XRB 42
XRB H5 H5 H 0 1 N N N N N N 53.870 -23.462 32.851 -0.571 -4.271 -0.296 H5 XRB 43
XRB H6 H6 H 0 1 N N N N N N 50.926 -27.594 35.883 0.161 1.994 -1.783 H6 XRB 44
XRB H7 H7 H 0 1 N N N N N N 48.481 -24.982 38.930 -7.257 0.434 -2.115 H7 XRB 45
XRB H8 H8 H 0 1 N N N N N N 47.871 -31.338 35.299 4.747 0.305 1.563 H8 XRB 46
XRB H9 H9 H 0 1 N N N N N N 48.341 -32.797 34.362 4.291 2.015 1.375 H9 XRB 47
XRB H10 H10 H 0 1 N N N N N N 47.636 -32.561 37.308 6.460 2.531 0.363 H10 XRB 48
XRB H11 H11 H 0 1 N N N N N N 46.921 -33.632 36.056 6.739 1.679 1.905 H11 XRB 49
XRB H12 H12 H 0 1 N N N N N N 49.641 -35.407 39.372 7.294 -2.253 1.128 H12 XRB 50
XRB H13 H13 H 0 1 N N N N N N 49.128 -37.092 39.023 8.654 -2.080 2.264 H13 XRB 51
XRB H14 H14 H 0 1 N N N N N N 50.392 -36.311 38.014 7.131 -1.206 2.559 H14 XRB 52
XRB H15 H15 H 0 1 N N N N N N 49.269 -34.678 34.741 7.123 -0.786 -1.466 H15 XRB 53
XRB H16 H16 H 0 1 N N N N N N 50.445 -35.313 35.941 6.716 0.903 -1.862 H16 XRB 54
XRB H17 H17 H 0 1 N N N N N N 51.131 -33.246 34.505 4.674 -0.444 -1.988 H17 XRB 55
XRB H18 H18 H 0 1 N N N N N N 51.435 -33.199 36.275 4.966 -1.101 -0.359 H18 XRB 56
XRB H19 H19 H 0 1 N N N N N N 50.712 -31.661 33.079 3.079 -0.956 0.906 H19 XRB 57
XRB H20 H20 H 0 1 N N N N N N 51.525 -29.546 32.125 0.649 -1.307 0.887 H20 XRB 58
XRB H21 H21 H 0 1 N N N N N N 49.308 -28.235 40.652 -8.408 2.268 -0.885 H21 XRB 59
XRB H22 H22 H 0 1 N N N N N N 47.279 -26.051 40.127 -7.935 2.065 2.138 H22 XRB 60
XRB H23 H23 H 0 1 N N N N N N 51.436 -27.996 39.555 -6.918 0.616 2.162 H23 XRB 61
XRB H24 H24 H 0 1 N N N N N N 54.107 -26.552 38.846 -4.384 -1.097 2.710 H24 XRB 62
XRB H25 H25 H 0 1 N N N N N N 53.391 -28.028 38.115 -6.045 -1.335 3.303 H25 XRB 63
XRB H26 H26 H 0 1 N N N N N N 53.783 -26.612 37.081 -5.231 -2.631 2.396 H26 XRB 64
XRB H27 H27 H 0 1 N N N N N N 51.654 -27.214 32.359 -1.731 0.874 -0.523 H27 XRB 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XRB N1 C13 DOUB Y N 1
XRB N1 C14 SING Y N 2
XRB C26 C25 DOUB Y N 3
XRB C26 C15 SING Y N 4
XRB N2 C14 SING N N 5
XRB N2 C15 SING N N 6
XRB C13 C12 SING Y N 7
XRB C25 C19 SING Y N 8
XRB C14 N6 DOUB Y N 9
XRB C15 C16 DOUB Y N 10
XRB C12 C11 DOUB Y N 11
XRB C19 N4 SING N N 12
XRB C19 C17 DOUB Y N 13
XRB N6 C11 SING Y N 14
XRB C16 C17 SING Y N 15
XRB C20 N4 SING N N 16
XRB C20 C21 SING N N 17
XRB C24 N4 SING N N 18
XRB C24 C23 SING N N 19
XRB C11 O SING N N 20
XRB C23 N5 SING N N 21
XRB C17 C18 SING N N 22
XRB C21 N5 SING N N 23
XRB O2 S DOUB N N 24
XRB N5 S SING N N 25
XRB O C10 SING N N 26
XRB C18 N3 TRIP N N 27
XRB C C1 SING N N 28
XRB S O1 DOUB N N 29
XRB S C22 SING N N 30
XRB C10 C1 DOUB Y N 31
XRB C10 C8 SING Y N 32
XRB C1 C2 SING Y N 33
XRB C9 C8 SING N N 34
XRB C8 C7 DOUB Y N 35
XRB C2 C3 DOUB Y N 36
XRB C7 C3 SING Y N 37
XRB C3 C4 SING N N 38
XRB C4 C5 DOUB N E 39
XRB C5 C6 SING N N 40
XRB C6 N TRIP N N 41
XRB C H1 SING N N 42
XRB C H2 SING N N 43
XRB C H3 SING N N 44
XRB C12 H4 SING N N 45
XRB C13 H5 SING N N 46
XRB C16 H6 SING N N 47
XRB C2 H7 SING N N 48
XRB C20 H8 SING N N 49
XRB C20 H9 SING N N 50
XRB C21 H10 SING N N 51
XRB C21 H11 SING N N 52
XRB C22 H12 SING N N 53
XRB C22 H13 SING N N 54
XRB C22 H14 SING N N 55
XRB C23 H15 SING N N 56
XRB C23 H16 SING N N 57
XRB C24 H17 SING N N 58
XRB C24 H18 SING N N 59
XRB C25 H19 SING N N 60
XRB C26 H20 SING N N 61
XRB C4 H21 SING N N 62
XRB C5 H22 SING N N 63
XRB C7 H23 SING N N 64
XRB C9 H24 SING N N 65
XRB C9 H25 SING N N 66
XRB C9 H26 SING N N 67
XRB N2 H27 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XRB SMILES ACDLabs 12.01 "O=S(C)(=O)N1CCN(CC1)c1ccc(Nc2nc(Oc3c(C)cc(\C=C\C#N)cc3C)ccn2)cc1C#N"
XRB InChI InChI 1.06 InChI=1S/C27H27N7O3S/c1-19-15-21(5-4-9-28)16-20(2)26(19)37-25-8-10-30-27(32-25)31-23-6-7-24(22(17-23)18-29)33-11-13-34(14-12-33)38(3,35)36/h4-8,10,15-17H,11-14H2,1-3H3,(H,30,31,32)/b5-4+
XRB InChIKey InChI 1.06 MMKBLGUSICHJOZ-SNAWJCMRSA-N
XRB SMILES_CANONICAL CACTVS 3.385 "Cc1cc(\C=C\C#N)cc(C)c1Oc2ccnc(Nc3ccc(N4CCN(CC4)[S](C)(=O)=O)c(c3)C#N)n2"
XRB SMILES CACTVS 3.385 "Cc1cc(C=CC#N)cc(C)c1Oc2ccnc(Nc3ccc(N4CCN(CC4)[S](C)(=O)=O)c(c3)C#N)n2"
XRB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2ccnc(n2)Nc3ccc(c(c3)C#N)N4CCN(CC4)S(=O)(=O)C)C)/C=C/C#N"
XRB SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2ccnc(n2)Nc3ccc(c(c3)C#N)N4CCN(CC4)S(=O)(=O)C)C)C=CC#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XRB "SYSTEMATIC NAME" ACDLabs 12.01 5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile
XRB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 5-[[4-[4-[(~{E})-2-cyanoethenyl]-2,6-dimethyl-phenoxy]pyrimidin-2-yl]amino]-2-(4-methylsulfonylpiperazin-1-yl)benzenecarbonitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XRB 'Create component' 2022-12-06 RCSB
XRB 'Initial release' 2023-10-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XRB N N 4.299 -8.149 1
XRB C C 3.000 0.101 2
XRB O O 5.598 1.601 3
XRB C1 C 4.299 -0.649 4
XRB C10 C 5.598 0.101 5
XRB C11 C 6.897 2.350 6
XRB C12 C 6.897 3.850 7
XRB C13 C 8.196 4.601 8
XRB C14 C 9.495 2.350 9
XRB C15 C 12.093 2.350 10
XRB C16 C 12.093 3.850 11
XRB C17 C 13.392 4.601 12
XRB C18 C 13.392 6.101 13
XRB C19 C 14.691 3.850 14
XRB C2 C 4.299 -2.150 15
XRB C20 C 17.290 3.850 16
XRB C21 C 18.588 4.601 17
XRB C22 C 21.187 7.601 18
XRB C23 C 17.290 6.851 19
XRB C24 C 15.990 6.101 20
XRB C25 C 14.691 2.350 21
XRB C26 C 13.392 1.601 22
XRB C3 C 5.598 -2.900 23
XRB C4 C 5.598 -4.399 24
XRB C5 C 4.299 -5.149 25
XRB C6 C 4.299 -6.649 26
XRB C7 C 6.897 -2.150 27
XRB C8 C 6.897 -0.649 28
XRB C9 C 8.196 0.101 29
XRB N1 N 9.495 3.850 30
XRB N2 N 10.794 1.601 31
XRB N3 N 13.392 7.601 32
XRB N4 N 15.990 4.601 33
XRB N5 N 18.588 6.101 34
XRB N6 N 8.196 1.601 35
XRB O1 O 19.137 8.149 36
XRB O2 O 20.637 5.551 37
XRB S S 19.887 6.851 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XRB N1 C13 SINGLE NONE 1
XRB N1 C14 DOUBLE NONE 2
XRB C26 C25 DOUBLE NONE 3
XRB C26 C15 SINGLE NONE 4
XRB N2 C14 SINGLE NONE 5
XRB N2 C15 SINGLE NONE 6
XRB C13 C12 DOUBLE NONE 7
XRB C25 C19 SINGLE NONE 8
XRB C14 N6 SINGLE NONE 9
XRB C15 C16 DOUBLE NONE 10
XRB C12 C11 SINGLE NONE 11
XRB C19 N4 SINGLE NONE 12
XRB C19 C17 DOUBLE NONE 13
XRB N6 C11 DOUBLE NONE 14
XRB C16 C17 SINGLE NONE 15
XRB C20 N4 SINGLE NONE 16
XRB C20 C21 SINGLE NONE 17
XRB C24 N4 SINGLE NONE 18
XRB C24 C23 SINGLE NONE 19
XRB C11 O SINGLE NONE 20
XRB C23 N5 SINGLE NONE 21
XRB C17 C18 SINGLE NONE 22
XRB C21 N5 SINGLE NONE 23
XRB O2 S DOUBLE NONE 24
XRB N5 S SINGLE NONE 25
XRB O C10 SINGLE NONE 26
XRB C18 N3 TRIPLE NONE 27
XRB C C1 SINGLE NONE 28
XRB S O1 DOUBLE NONE 29
XRB S C22 SINGLE NONE 30
XRB C10 C1 DOUBLE NONE 31
XRB C10 C8 SINGLE NONE 32
XRB C1 C2 SINGLE NONE 33
XRB C9 C8 SINGLE NONE 34
XRB C8 C7 DOUBLE NONE 35
XRB C2 C3 DOUBLE NONE 36
XRB C7 C3 SINGLE NONE 37
XRB C3 C4 SINGLE ENDUPRIGHT 38
XRB C4 C5 DOUBLE NONE 39
XRB C5 C6 SINGLE ENDUPRIGHT 40
XRB C6 N TRIPLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XRB MurckoScaffold S1 scaffold c1ccc(Oc2ccnc(Nc3ccc(N4CCNCC4)cc3)n2)cc1 InChI=1S/C20H21N5O/c1-2-4-18(5-3-1)26-19-10-11-22-20(24-19)23-16-6-8-17(9-7-16)25-14-12-21-13-15-25/h1-11,21H,12-15H2,(H,22,23,24) WNCNQTOSMNPRSG-UHFFFAOYSA-N
XRB phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XRB piperazine F2 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
XRB pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
XRB Z281802060 F4 fragment CNc1nccc(OC)n1 InChI=1S/C6H9N3O/c1-7-6-8-4-3-5(9-6)10-2/h3-4H,1-2H3,(H,7,8,9) OPBJFWASRUHSHW-UHFFFAOYSA-N
XRB Z54628578 F5 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XRB O S1 1
XRB C1 S1 1
XRB C10 S1 1
XRB C11 S1 1
XRB C12 S1 1
XRB C13 S1 1
XRB C14 S1 1
XRB C15 S1 1
XRB C16 S1 1
XRB C17 S1 1
XRB C19 S1 1
XRB C2 S1 1
XRB C20 S1 1
XRB C21 S1 1
XRB C23 S1 1
XRB C24 S1 1
XRB C25 S1 1
XRB C26 S1 1
XRB C3 S1 1
XRB C7 S1 1
XRB C8 S1 1
XRB N1 S1 1
XRB N2 S1 1
XRB N4 S1 1
XRB N5 S1 1
XRB N6 S1 1
XRB C1 F1 1
XRB C10 F1 1
XRB C8 F1 1
XRB C7 F1 1
XRB C3 F1 1
XRB C2 F1 1
XRB C15 F1 2
XRB C26 F1 2
XRB C25 F1 2
XRB C19 F1 2
XRB C17 F1 2
XRB C16 F1 2
XRB N4 F2 1
XRB C20 F2 1
XRB C21 F2 1
XRB N5 F2 1
XRB C23 F2 1
XRB C24 F2 1
XRB C12 F3 1
XRB C13 F3 1
XRB N1 F3 1
XRB C14 F3 1
XRB N6 F3 1
XRB C11 F3 1
XRB C15 F4 1
XRB N2 F4 1
XRB C14 F4 1
XRB N1 F4 1
XRB C13 F4 1
XRB C12 F4 1
XRB C11 F4 1
XRB O F4 1
XRB C10 F4 1
XRB N6 F4 1
XRB C15 F5 1
XRB N2 F5 1
XRB C14 F5 1
XRB N1 F5 1
XRB C13 F5 1
XRB C12 F5 1
XRB C11 F5 1
XRB N6 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XRB
_pdbe_chem_comp_rdkit_properties.exactmw 529.190
_pdbe_chem_comp_rdkit_properties.amw 529.626
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.259
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.025
_pdbe_chem_comp_rdkit_properties.tpsa 135.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.834
_pdbe_chem_comp_rdkit_properties.CrippenMR 140.982
_pdbe_chem_comp_rdkit_properties.chi0v 19.080
_pdbe_chem_comp_rdkit_properties.chi1v 10.975
_pdbe_chem_comp_rdkit_properties.chi2v 4.674
_pdbe_chem_comp_rdkit_properties.chi3v 4.674
_pdbe_chem_comp_rdkit_properties.chi4v 2.834
_pdbe_chem_comp_rdkit_properties.chi0n 45.263
_pdbe_chem_comp_rdkit_properties.chi1n 22.982
_pdbe_chem_comp_rdkit_properties.chi2n 4.010
_pdbe_chem_comp_rdkit_properties.chi3n 4.010
_pdbe_chem_comp_rdkit_properties.chi4n 2.512
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.450
_pdbe_chem_comp_rdkit_properties.kappa1 8.802
_pdbe_chem_comp_rdkit_properties.kappa2 11.299
_pdbe_chem_comp_rdkit_properties.kappa3 6.266
_pdbe_chem_comp_rdkit_properties.Phi 2.617
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XRB UniChem PDBe XRB
XRB UniChem PubChem 168665409
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XRB N -11.282 -5.879 -0.184 ETKDGv3 1
XRB C -6.557 0.088 3.350 ETKDGv3 2
XRB O -4.925 0.523 1.110 ETKDGv3 3
XRB C1 -6.815 -0.582 2.029 ETKDGv3 4
XRB C10 -6.007 -0.357 0.975 ETKDGv3 5
XRB C11 -3.589 0.154 0.913 ETKDGv3 6
XRB C12 -3.166 -1.266 0.873 ETKDGv3 7
XRB C13 -1.872 -1.543 0.697 ETKDGv3 8
XRB C14 -1.303 0.771 0.583 ETKDGv3 9
XRB C15 1.012 1.659 0.039 ETKDGv3 10
XRB C16 1.978 2.447 0.540 ETKDGv3 11
XRB C17 3.383 2.295 0.098 ETKDGv3 12
XRB C18 4.396 3.119 0.713 ETKDGv3 13
XRB C19 3.698 1.376 -0.838 ETKDGv3 14
XRB C2 -7.915 -1.567 1.916 ETKDGv3 15
XRB C20 5.665 2.204 -2.163 ETKDGv3 16
XRB C21 7.164 2.397 -1.844 ETKDGv3 17
XRB C22 10.146 0.326 0.215 ETKDGv3 18
XRB C23 7.206 0.006 -1.411 ETKDGv3 19
XRB C24 5.721 -0.083 -1.054 ETKDGv3 20
XRB C25 2.629 0.528 -1.414 ETKDGv3 21
XRB C26 1.362 0.664 -1.007 ETKDGv3 22
XRB C3 -8.128 -2.238 0.771 ETKDGv3 23
XRB C4 -9.232 -3.227 0.712 ETKDGv3 24
XRB C5 -9.309 -4.193 -0.209 ETKDGv3 25
XRB C6 -10.403 -5.127 -0.195 ETKDGv3 26
XRB C7 -7.278 -1.932 -0.410 ETKDGv3 27
XRB C8 -6.289 -1.026 -0.329 ETKDGv3 28
XRB C9 -5.477 -0.701 -1.554 ETKDGv3 29
XRB N1 -0.924 -0.476 0.555 ETKDGv3 30
XRB N2 -0.346 1.834 0.476 ETKDGv3 31
XRB N3 5.210 3.779 1.204 ETKDGv3 32
XRB N4 5.053 1.202 -1.283 ETKDGv3 33
XRB N5 7.717 1.320 -0.995 ETKDGv3 34
XRB N6 -2.691 1.087 0.786 ETKDGv3 35
XRB O1 9.927 0.832 -2.412 ETKDGv3 36
XRB O2 9.958 2.749 -0.886 ETKDGv3 37
XRB S 9.461 1.343 -1.076 ETKDGv3 38
XRB H1 -7.397 -0.083 4.056 ETKDGv3 39
XRB H2 -6.447 1.185 3.208 ETKDGv3 40
XRB H3 -5.627 -0.319 3.799 ETKDGv3 41
XRB H4 -3.881 -2.070 0.995 ETKDGv3 42
XRB H5 -1.534 -2.571 0.668 ETKDGv3 43
XRB H6 1.734 3.190 1.290 ETKDGv3 44
XRB H7 -8.536 -1.764 2.783 ETKDGv3 45
XRB H8 5.138 3.179 -2.080 ETKDGv3 46
XRB H9 5.555 1.859 -3.215 ETKDGv3 47
XRB H10 7.290 3.363 -1.308 ETKDGv3 48
XRB H11 7.721 2.472 -2.805 ETKDGv3 49
XRB H12 9.672 0.587 1.183 ETKDGv3 50
XRB H13 11.240 0.500 0.283 ETKDGv3 51
XRB H14 9.965 -0.745 -0.008 ETKDGv3 52
XRB H15 7.740 -0.812 -0.882 ETKDGv3 53
XRB H16 7.344 -0.142 -2.507 ETKDGv3 54
XRB H17 5.629 -0.350 0.022 ETKDGv3 55
XRB H18 5.236 -0.880 -1.658 ETKDGv3 56
XRB H19 2.869 -0.191 -2.187 ETKDGv3 57
XRB H20 0.593 0.062 -1.473 ETKDGv3 58
XRB H21 -9.997 -3.184 1.482 ETKDGv3 59
XRB H22 -8.546 -4.321 -0.963 ETKDGv3 60
XRB H23 -7.483 -2.406 -1.360 ETKDGv3 61
XRB H24 -5.095 0.340 -1.507 ETKDGv3 62
XRB H25 -4.621 -1.403 -1.631 ETKDGv3 63
XRB H26 -6.095 -0.787 -2.474 ETKDGv3 64
XRB H27 -0.647 2.783 0.796 ETKDGv3 65
#