data_XT9
#
_chem_comp.id XT9
_chem_comp.name 6beta-amino-17-propyl-5alpha,9alpha,13alpha-4,5-epoxymorphinan-3,14-diol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H26 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-12-07
_chem_comp.pdbx_modified_date 2024-10-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 330.421
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XT9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FEG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XT9 C29 C1 C 0 1 N N R N N N 118.569 133.345 94.640 -1.458 -2.652 -0.615 C29 XT9 1
XT9 C30 C2 C 0 1 N N N N N N 117.587 132.344 95.487 -0.509 -3.276 0.429 C30 XT9 2
XT9 C31 C3 C 0 1 N N N N N N 117.795 132.296 96.983 0.748 -2.453 0.718 C31 XT9 3
XT9 C32 C4 C 0 1 N N R N N N 119.871 133.580 95.184 -1.784 -1.260 -0.146 C32 XT9 4
XT9 C33 C5 C 0 1 N N R N N N 120.250 132.799 96.452 -0.423 -0.546 -0.120 C33 XT9 5
XT9 C34 C6 C 0 1 N N S N N N 119.118 132.867 97.495 0.381 -1.012 1.097 C34 XT9 6
XT9 C36 C7 C 0 1 N N S N N N 119.614 132.285 98.929 1.563 -0.050 1.159 C36 XT9 7
XT9 C37 C8 C 0 1 N N N N N N 121.092 133.099 99.399 1.163 1.409 1.365 C37 XT9 8
XT9 C38 C9 C 0 1 N N N N N N 120.737 131.207 96.496 0.384 -0.722 -1.391 C38 XT9 9
XT9 C39 C10 C 0 1 N N N N N N 120.754 130.582 98.032 1.646 0.147 -1.276 C39 XT9 10
XT9 C41 C11 C 0 1 N N N N N N 119.853 130.498 100.078 3.619 0.585 0.054 C41 XT9 11
XT9 C42 C12 C 0 1 N N N N N N 119.511 128.981 100.040 4.576 0.174 -1.068 C42 XT9 12
XT9 C43 C13 C 0 1 N N N N N N 119.367 128.493 101.271 5.869 0.984 -0.958 C43 XT9 13
XT9 C44 C14 C 0 1 Y N N N N N 121.432 133.498 96.789 -0.862 0.858 0.081 C44 XT9 14
XT9 C45 C15 C 0 1 Y N N N N N 121.915 133.714 98.006 -0.132 1.816 0.745 C45 XT9 15
XT9 C46 C16 C 0 1 Y N N N N N 123.149 134.449 98.110 -0.746 3.053 0.787 C46 XT9 16
XT9 C47 C17 C 0 1 Y N N N N N 123.783 134.920 96.945 -2.010 3.214 0.236 C47 XT9 17
XT9 C48 C18 C 0 1 Y N N N N N 123.224 134.669 95.701 -2.753 2.195 -0.362 C48 XT9 18
XT9 C50 C19 C 0 1 Y N N N N N 122.004 133.929 95.627 -2.156 0.937 -0.426 C50 XT9 19
XT9 N28 N1 N 0 1 N N N Y Y N 117.881 134.686 94.674 -2.689 -3.448 -0.711 N28 XT9 20
XT9 N40 N2 N 0 1 N N N N N N 119.753 131.032 98.859 2.378 -0.194 -0.052 N40 XT9 21
XT9 O35 O1 O 0 1 N N N N N N 118.875 134.233 97.741 -0.405 -0.973 2.290 O35 XT9 22
XT9 O49 O2 O 0 1 N N N N N N 123.847 135.138 94.527 -4.000 2.418 -0.858 O49 XT9 23
XT9 O51 O3 O 0 1 N N N N N N 121.095 133.479 94.489 -2.569 -0.303 -0.837 O51 XT9 24
XT9 H1 H1 H 0 1 N N N N N N 118.630 132.978 93.605 -0.967 -2.610 -1.587 H1 XT9 25
XT9 H2 H2 H 0 1 N N N N N N 116.550 132.662 95.305 -1.059 -3.406 1.361 H2 XT9 26
XT9 H3 H3 H 0 1 N N N N N N 117.733 131.326 95.097 -0.203 -4.260 0.073 H3 XT9 27
XT9 H4 H4 H 0 1 N N N N N N 116.979 132.863 97.455 1.295 -2.911 1.542 H4 XT9 28
XT9 H5 H5 H 0 1 N N N N N N 117.739 131.243 97.297 1.380 -2.440 -0.169 H5 XT9 29
XT9 H6 H6 H 0 1 N N N N N N 119.836 134.623 95.531 -2.150 -1.318 0.879 H6 XT9 30
XT9 H7 H7 H 0 1 N N N N N N 118.860 132.578 99.675 2.189 -0.346 2.001 H7 XT9 31
XT9 H8 H8 H 0 1 N N N N N N 121.747 132.386 99.921 1.104 1.598 2.437 H8 XT9 32
XT9 H9 H9 H 0 1 N N N N N N 120.847 133.934 100.073 1.950 2.040 0.952 H9 XT9 33
XT9 H10 H10 H 0 1 N N N N N N 120.046 130.611 95.882 0.667 -1.769 -1.505 H10 XT9 34
XT9 H11 H11 H 0 1 N N N N N N 121.752 131.138 96.077 -0.206 -0.403 -2.250 H11 XT9 35
XT9 H12 H12 H 0 1 N N N N N N 120.666 129.488 97.955 2.286 -0.029 -2.141 H12 XT9 36
XT9 H13 H13 H 0 1 N N N N N N 121.718 130.840 98.494 1.361 1.198 -1.247 H13 XT9 37
XT9 H14 H14 H 0 1 N N N N N N 120.881 130.628 100.446 4.088 0.393 1.019 H14 XT9 38
XT9 H15 H15 H 0 1 N N N N N N 119.153 131.010 100.755 3.391 1.647 -0.035 H15 XT9 39
XT9 H16 H16 H 0 1 N N N N N N 118.573 128.838 99.484 4.804 -0.888 -0.980 H16 XT9 40
XT9 H17 H17 H 0 1 N N N N N N 120.324 128.442 99.532 4.107 0.366 -2.033 H17 XT9 41
XT9 H18 H18 H 0 1 N N N N N N 119.126 127.421 101.215 5.640 2.046 -1.046 H18 XT9 42
XT9 H19 H19 H 0 1 N N N N N N 120.304 128.630 101.831 6.337 0.793 0.007 H19 XT9 43
XT9 H20 H20 H 0 1 N N N N N N 118.552 129.026 101.783 6.550 0.692 -1.757 H20 XT9 44
XT9 H21 H21 H 0 1 N N N N N N 123.587 134.638 99.079 -0.244 3.891 1.248 H21 XT9 45
XT9 H22 H22 H 0 1 N N N N N N 124.705 135.477 97.020 -2.450 4.200 0.273 H22 XT9 46
XT9 H23 H23 H 0 1 N N N Y Y N 116.956 134.596 94.304 -2.490 -4.386 -1.025 H23 XT9 47
XT9 H24 H24 H 0 1 N Y N Y Y N 117.832 135.012 95.618 -3.183 -3.458 0.169 H24 XT9 48
XT9 H27 H27 H 0 1 N N N N N N 118.180 134.321 98.382 0.037 -1.350 3.064 H27 XT9 49
XT9 H28 H28 H 0 1 N N N N N N 124.641 135.606 94.755 -4.011 2.688 -1.787 H28 XT9 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XT9 O51 C32 SING N N 1
XT9 O51 C50 SING N N 2
XT9 O49 C48 SING N N 3
XT9 C29 N28 SING N N 4
XT9 C29 C32 SING N N 5
XT9 C29 C30 SING N N 6
XT9 C32 C33 SING N N 7
XT9 C30 C31 SING N N 8
XT9 C50 C48 DOUB Y N 9
XT9 C50 C44 SING Y N 10
XT9 C48 C47 SING Y N 11
XT9 C33 C38 SING N N 12
XT9 C33 C44 SING N N 13
XT9 C33 C34 SING N N 14
XT9 C38 C39 SING N N 15
XT9 C44 C45 DOUB Y N 16
XT9 C47 C46 DOUB Y N 17
XT9 C31 C34 SING N N 18
XT9 C34 O35 SING N N 19
XT9 C34 C36 SING N N 20
XT9 C45 C46 SING Y N 21
XT9 C45 C37 SING N N 22
XT9 C39 N40 SING N N 23
XT9 N40 C36 SING N N 24
XT9 N40 C41 SING N N 25
XT9 C36 C37 SING N N 26
XT9 C42 C41 SING N N 27
XT9 C42 C43 SING N N 28
XT9 C29 H1 SING N N 29
XT9 C30 H2 SING N N 30
XT9 C30 H3 SING N N 31
XT9 C31 H4 SING N N 32
XT9 C31 H5 SING N N 33
XT9 C32 H6 SING N N 34
XT9 C36 H7 SING N N 35
XT9 C37 H8 SING N N 36
XT9 C37 H9 SING N N 37
XT9 C38 H10 SING N N 38
XT9 C38 H11 SING N N 39
XT9 C39 H12 SING N N 40
XT9 C39 H13 SING N N 41
XT9 C41 H14 SING N N 42
XT9 C41 H15 SING N N 43
XT9 C42 H16 SING N N 44
XT9 C42 H17 SING N N 45
XT9 C43 H18 SING N N 46
XT9 C43 H19 SING N N 47
XT9 C43 H20 SING N N 48
XT9 C46 H21 SING N N 49
XT9 C47 H22 SING N N 50
XT9 N28 H23 SING N N 51
XT9 N28 H24 SING N N 52
XT9 O35 H27 SING N N 53
XT9 O49 H28 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XT9 SMILES ACDLabs 12.01 "Oc1ccc2CC3N(CCC45C(Oc1c24)C(N)CCC35O)CCC"
XT9 InChI InChI 1.06 "InChI=1S/C19H26N2O3/c1-2-8-21-9-7-18-15-11-3-4-13(22)16(15)24-17(18)12(20)5-6-19(18,23)14(21)10-11/h3-4,12,14,17,22-23H,2,5-10,20H2,1H3/t12-,14+,17+,18-,19-/m1/s1"
XT9 InChIKey InChI 1.06 SZCSIOFISXRVGM-UBDCPRGSSA-N
XT9 SMILES_CANONICAL CACTVS 3.385 "CCCN1CC[C@@]23[C@H]4Oc5c(O)ccc(C[C@H]1[C@]2(O)CC[C@H]4N)c35"
XT9 SMILES CACTVS 3.385 "CCCN1CC[C]23[CH]4Oc5c(O)ccc(C[CH]1[C]2(O)CC[CH]4N)c35"
XT9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN1CC[C@@]23c4c5ccc(c4O[C@H]2[C@@H](CC[C@]3([C@@H]1C5)O)N)O"
XT9 SMILES "OpenEye OEToolkits" 2.0.7 "CCCN1CCC23c4c5ccc(c4OC2C(CCC3(C1C5)O)N)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XT9 "SYSTEMATIC NAME" ACDLabs 12.01 6beta-amino-17-propyl-5alpha,9alpha,13alpha-4,5-epoxymorphinan-3,14-diol
XT9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},4~{a}~{S},7~{R},7~{a}~{R},12~{b}~{R})-7-azanyl-3-propyl-1,2,4,5,6,7,7~{a},13-octahydro-4,12-methanobenzofuro[3,2-e]isoquinoline-4~{a},9-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XT9 'Create component' 2022-12-07 RCSB
XT9 'Initial release' 2023-12-06 RCSB
XT9 'Modify PCM' 2024-09-27 PDBE
XT9 'Modify backbone' 2024-10-02 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id XT9
_pdbx_chem_comp_pcm.modified_residue_id ?
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Non-standard residue'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain and backbone'
_pdbx_chem_comp_pcm.polypeptide_position C-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XT9 C29 C 5.104 -2.853 1
XT9 C30 C 6.340 -3.567 2
XT9 C31 C 7.575 -2.853 3
XT9 C32 C 5.104 -1.427 4
XT9 C33 C 6.340 -0.713 5
XT9 C34 C 7.575 -1.427 6
XT9 C36 C 8.811 -0.713 7
XT9 C37 C 8.811 0.713 8
XT9 C38 C 7.164 0.333 9
XT9 C39 C 9.193 0.333 10
XT9 C41 C 11.068 -2.525 11
XT9 C42 C 12.530 -2.189 12
XT9 C43 C 13.552 -3.287 13
XT9 C44 C 6.340 0.713 14
XT9 C45 C 7.575 1.427 15
XT9 C46 C 7.575 2.853 16
XT9 C47 C 6.340 3.567 17
XT9 C48 C 5.104 2.853 18
XT9 C50 C 5.104 1.427 19
XT9 N28 N 3.805 -3.603 20
XT9 N40 N 10.046 -1.427 21
XT9 O35 O 8.540 -2.576 22
XT9 O49 O 3.805 3.603 23
XT9 O51 O 4.152 0.079 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XT9 O51 C32 SINGLE NONE 1
XT9 O51 C50 SINGLE NONE 2
XT9 O49 C48 SINGLE NONE 3
XT9 C29 N28 SINGLE BEGINWEDGE 4
XT9 C29 C32 SINGLE NONE 5
XT9 C29 C30 SINGLE NONE 6
XT9 C32 C33 SINGLE NONE 7
XT9 C30 C31 SINGLE NONE 8
XT9 C50 C48 SINGLE NONE 9
XT9 C50 C44 DOUBLE NONE 10
XT9 C48 C47 DOUBLE NONE 11
XT9 C33 C38 SINGLE BEGINDASH 12
XT9 C33 C44 SINGLE NONE 13
XT9 C33 C34 SINGLE NONE 14
XT9 C38 C39 SINGLE NONE 15
XT9 C44 C45 SINGLE NONE 16
XT9 C47 C46 SINGLE NONE 17
XT9 C31 C34 SINGLE NONE 18
XT9 C34 O35 SINGLE BEGINWEDGE 19
XT9 C34 C36 SINGLE NONE 20
XT9 C45 C46 DOUBLE NONE 21
XT9 C45 C37 SINGLE NONE 22
XT9 C39 N40 SINGLE NONE 23
XT9 N40 C36 SINGLE NONE 24
XT9 N40 C41 SINGLE NONE 25
XT9 C36 C37 SINGLE NONE 26
XT9 C42 C41 SINGLE NONE 27
XT9 C42 C43 SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XT9 MurckoScaffold S1 scaffold 'c1cc2c3c(c1)O[C@H]1CCCC4[C@H](C2)NCC[C@]341' InChI=1S/C16H19NO/c1-3-10-9-12-11-4-2-6-14-16(11,7-8-17-12)15(10)13(5-1)18-14/h1,3,5,11-12,14,17H,2,4,6-9H2/t11-,12-,14-,16-/m0/s1 QONGLMDHKNFCDX-DUPGQFARSA-N
XT9 alkaloid F1 fragment c1ccc2c(c1)CC1NCCC23CCCCC13 InChI=1S/C16H21N/c1-2-6-13-12(5-1)11-15-14-7-3-4-8-16(13,14)9-10-17-15/h1-2,5-6,14-15,17H,3-4,7-11H2 INAXVFBXDYWQFN-UHFFFAOYSA-N
XT9 benzofuran F2 fragment c1ccc2c(c1)CCO2 InChI=1S/C8H8O/c1-2-4-8-7(3-1)5-6-9-8/h1-4H,5-6H2 HBEDSQVIWPRPAY-UHFFFAOYSA-N
XT9 cyclohexane F3 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
XT9 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XT9 Z419084966 F5 fragment NCC(O)Cc1ccccc1 InChI=1S/C9H13NO/c10-7-9(11)6-8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 JIIXMZQZEAAIJX-UHFFFAOYSA-N
XT9 Z2856434901 F6 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XT9 C29 S1 1
XT9 C30 S1 1
XT9 C31 S1 1
XT9 C32 S1 1
XT9 C33 S1 1
XT9 C34 S1 1
XT9 C36 S1 1
XT9 C37 S1 1
XT9 C38 S1 1
XT9 C39 S1 1
XT9 C44 S1 1
XT9 C45 S1 1
XT9 C46 S1 1
XT9 C47 S1 1
XT9 C48 S1 1
XT9 C50 S1 1
XT9 N40 S1 1
XT9 O51 S1 1
XT9 C47 F1 1
XT9 C48 F1 1
XT9 C50 F1 1
XT9 C44 F1 1
XT9 C45 F1 1
XT9 C46 F1 1
XT9 C37 F1 1
XT9 C36 F1 1
XT9 C34 F1 1
XT9 C33 F1 1
XT9 C32 F1 1
XT9 C29 F1 1
XT9 C30 F1 1
XT9 C31 F1 1
XT9 C38 F1 1
XT9 C39 F1 1
XT9 N40 F1 1
XT9 C50 F2 1
XT9 C44 F2 1
XT9 C33 F2 1
XT9 C32 F2 1
XT9 O51 F2 1
XT9 C45 F2 1
XT9 C46 F2 1
XT9 C47 F2 1
XT9 C48 F2 1
XT9 C29 F3 1
XT9 C32 F3 1
XT9 C33 F3 1
XT9 C34 F3 1
XT9 C31 F3 1
XT9 C30 F3 1
XT9 C44 F4 1
XT9 C50 F4 1
XT9 C48 F4 1
XT9 C47 F4 1
XT9 C46 F4 1
XT9 C45 F4 1
XT9 N28 F5 1
XT9 C29 F5 1
XT9 C32 F5 1
XT9 O51 F5 1
XT9 C33 F5 1
XT9 C44 F5 1
XT9 C50 F5 1
XT9 C48 F5 1
XT9 C47 F5 1
XT9 C46 F5 1
XT9 C45 F5 1
XT9 N40 F5 2
XT9 C36 F5 2
XT9 C34 F5 2
XT9 O35 F5 2
XT9 C33 F5 2
XT9 C44 F5 2
XT9 C50 F5 2
XT9 C48 F5 2
XT9 C47 F5 2
XT9 C46 F5 2
XT9 C45 F5 2
XT9 C36 F6 1
XT9 N40 F6 1
XT9 C39 F6 1
XT9 C38 F6 1
XT9 C33 F6 1
XT9 C32 F6 1
XT9 C29 F6 1
XT9 C30 F6 1
XT9 C31 F6 1
XT9 C34 F6 1
XT9 C41 F6 2
XT9 N40 F6 2
XT9 C39 F6 2
XT9 C38 F6 2
XT9 C33 F6 2
XT9 C32 F6 2
XT9 C29 F6 2
XT9 C30 F6 2
XT9 C31 F6 2
XT9 C34 F6 2
#
_pdbe_chem_comp_rdkit_properties.comp_id XT9
_pdbe_chem_comp_rdkit_properties.exactmw 330.194
_pdbe_chem_comp_rdkit_properties.amw 330.428
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.684
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 178.773
_pdbe_chem_comp_rdkit_properties.tpsa 78.950
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.249
_pdbe_chem_comp_rdkit_properties.CrippenMR 88.581
_pdbe_chem_comp_rdkit_properties.chi0v 11.619
_pdbe_chem_comp_rdkit_properties.chi1v 6.711
_pdbe_chem_comp_rdkit_properties.chi2v 4.328
_pdbe_chem_comp_rdkit_properties.chi3v 4.328
_pdbe_chem_comp_rdkit_properties.chi4v 3.366
_pdbe_chem_comp_rdkit_properties.chi0n 37.619
_pdbe_chem_comp_rdkit_properties.chi1n 19.422
_pdbe_chem_comp_rdkit_properties.chi2n 4.328
_pdbe_chem_comp_rdkit_properties.chi3n 4.328
_pdbe_chem_comp_rdkit_properties.chi4n 3.366
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.300
_pdbe_chem_comp_rdkit_properties.kappa1 3.849
_pdbe_chem_comp_rdkit_properties.kappa2 4.654
_pdbe_chem_comp_rdkit_properties.kappa3 1.479
_pdbe_chem_comp_rdkit_properties.Phi 0.746
#
_pdbe_chem_comp_external_mappings.comp_id XT9
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 169491067
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XT9 C29 -2.421 -2.136 -1.013 ETKDGv3 1
XT9 C30 -1.535 -3.046 -0.069 ETKDGv3 2
XT9 C31 -0.206 -2.408 0.504 ETKDGv3 3
XT9 C32 -2.494 -0.754 -0.364 ETKDGv3 4
XT9 C33 -1.085 -0.204 -0.167 ETKDGv3 5
XT9 C34 -0.373 -0.919 0.973 ETKDGv3 6
XT9 C36 0.935 -0.090 1.222 ETKDGv3 7
XT9 C37 0.606 1.404 1.678 ETKDGv3 8
XT9 C38 -0.198 -0.141 -1.462 ETKDGv3 9
XT9 C39 1.180 0.477 -1.173 ETKDGv3 10
XT9 C41 3.167 0.372 0.259 ETKDGv3 11
XT9 C42 4.192 -0.476 -0.501 ETKDGv3 12
XT9 C43 5.617 -0.002 -0.228 ETKDGv3 13
XT9 C44 -1.431 1.160 0.168 ETKDGv3 14
XT9 C45 -0.607 2.026 0.986 ETKDGv3 15
XT9 C46 -1.043 3.289 1.164 ETKDGv3 16
XT9 C47 -2.326 3.736 0.514 ETKDGv3 17
XT9 C48 -3.077 2.869 -0.215 ETKDGv3 18
XT9 C50 -2.585 1.488 -0.363 ETKDGv3 19
XT9 N28 -3.767 -2.692 -1.167 ETKDGv3 20
XT9 N40 1.803 -0.147 0.015 ETKDGv3 21
XT9 O35 -1.158 -0.892 2.146 ETKDGv3 22
XT9 O49 -4.279 3.256 -0.801 ETKDGv3 23
XT9 O51 -3.202 0.359 -0.930 ETKDGv3 24
XT9 H1 -1.971 -2.073 -2.024 ETKDGv3 25
XT9 H2 -1.274 -3.979 -0.614 ETKDGv3 26
XT9 H3 -2.149 -3.351 0.806 ETKDGv3 27
XT9 H4 0.142 -3.024 1.361 ETKDGv3 28
XT9 H5 0.595 -2.496 -0.258 ETKDGv3 29
XT9 H6 -2.985 -0.924 0.626 ETKDGv3 30
XT9 H7 1.472 -0.588 2.061 ETKDGv3 31
XT9 H8 0.393 1.390 2.768 ETKDGv3 32
XT9 H9 1.486 2.063 1.533 ETKDGv3 33
XT9 H10 -0.018 -1.142 -1.899 ETKDGv3 34
XT9 H11 -0.701 0.454 -2.258 ETKDGv3 35
XT9 H12 1.821 0.310 -2.066 ETKDGv3 36
XT9 H13 1.089 1.577 -1.047 ETKDGv3 37
XT9 H14 3.256 1.438 -0.051 ETKDGv3 38
XT9 H15 3.425 0.325 1.341 ETKDGv3 39
XT9 H16 4.001 -0.418 -1.593 ETKDGv3 40
XT9 H17 4.097 -1.538 -0.186 ETKDGv3 41
XT9 H18 6.333 -0.633 -0.794 ETKDGv3 42
XT9 H19 5.851 -0.084 0.855 ETKDGv3 43
XT9 H20 5.740 1.054 -0.551 ETKDGv3 44
XT9 H21 -0.489 3.976 1.790 ETKDGv3 45
XT9 H22 -2.656 4.757 0.651 ETKDGv3 46
XT9 H23 -4.202 -2.833 -0.226 ETKDGv3 47
XT9 H24 -3.685 -3.634 -1.613 ETKDGv3 48
XT9 H27 -0.648 -1.357 2.859 ETKDGv3 49
XT9 H28 -4.635 4.201 -0.707 ETKDGv3 50
#