data_XU9
#
_chem_comp.id XU9
_chem_comp.name "ethyl (8S)-4-(cyclopropylethynyl)pyrazolo[1,5-a]pyridine-3-carboxylate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H14 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-12-12
_chem_comp.pdbx_modified_date 2023-04-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 254.284
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XU9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8FFX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XU9 C1 C1 C 0 1 N N N N N N 53.535 -26.683 36.611 -2.313 -2.970 -0.061 C1 XU9 1
XU9 C2 C2 C 0 1 N N N N N N 54.923 -27.052 36.886 -2.607 -4.471 -0.019 C2 XU9 2
XU9 C3 C3 C 0 1 Y N N N N N 52.108 -28.517 33.745 0.987 -1.187 0.015 C3 XU9 3
XU9 C5 C4 C 0 1 Y N N N N N 52.481 -29.029 32.489 2.031 -2.127 0.101 C5 XU9 4
XU9 C6 C5 C 0 1 Y N N N N N 49.935 -31.256 33.213 3.780 0.961 0.056 C6 XU9 5
XU9 C8 C6 C 0 1 Y N N N N N 49.270 -30.396 35.341 1.934 2.471 -0.078 C8 XU9 6
XU9 C10 C7 C 0 1 N N N N N N 50.173 -28.292 36.229 -0.357 1.606 -0.145 C10 XU9 7
XU9 C12 C8 C 0 1 N N N N N N 49.924 -26.319 37.940 -2.971 1.999 -0.272 C12 XU9 8
XU9 C13 C9 C 0 1 N N N N N N 48.614 -26.107 38.604 -3.466 3.445 -0.346 C13 XU9 9
XU9 N N1 N 0 1 Y N N N N N 50.860 -30.246 33.155 2.934 -0.107 0.059 N XU9 10
XU9 C C10 C 0 1 N N N N N N 52.773 -27.423 34.488 -0.448 -1.478 -0.036 C XU9 11
XU9 O O1 O 0 1 N N N N N N 53.128 -26.382 33.997 -1.251 -0.568 -0.103 O XU9 12
XU9 C11 C11 C 0 1 N N N N N N 50.089 -27.403 37.017 -1.517 1.781 -0.201 C11 XU9 13
XU9 C14 C12 C 0 1 N N N N N N 49.053 -25.190 37.527 -3.650 2.639 0.941 C14 XU9 14
XU9 C4 C13 C 0 1 Y N N N N N 51.027 -29.318 34.149 1.584 0.085 -0.006 C4 XU9 15
XU9 C7 C14 C 0 1 Y N N N N N 49.152 -31.341 34.309 3.309 2.228 -0.010 C7 XU9 16
XU9 C9 C15 C 0 1 Y N N N N N 50.169 -29.368 35.287 1.057 1.394 -0.076 C9 XU9 17
XU9 N1 N2 N 0 1 Y N N N N N 51.744 -30.067 32.116 3.169 -1.486 0.130 N1 XU9 18
XU9 O1 O2 O 0 1 N N N N N N 52.954 -27.728 35.776 -0.878 -2.757 -0.007 O1 XU9 19
XU9 H1 H1 H 0 1 N N N N N N 53.502 -25.719 36.082 -2.709 -2.549 -0.985 H1 XU9 20
XU9 H2 H2 H 0 1 N N N N N N 52.975 -26.603 37.554 -2.785 -2.484 0.793 H2 XU9 21
XU9 H3 H3 H 0 1 N N N N N N 55.390 -26.281 37.516 -2.135 -4.958 -0.872 H3 XU9 22
XU9 H4 H4 H 0 1 N N N N N N 54.948 -28.019 37.411 -2.211 -4.893 0.905 H4 XU9 23
XU9 H5 H5 H 0 1 N N N N N N 55.475 -27.135 35.938 -3.684 -4.632 -0.059 H5 XU9 24
XU9 H6 H6 H 0 1 N N N N N N 53.283 -28.620 31.892 1.911 -3.199 0.136 H6 XU9 25
XU9 H7 H7 H 0 1 N N N N N N 49.836 -31.964 32.404 4.845 0.794 0.109 H7 XU9 26
XU9 H8 H8 H 0 1 N N N N N N 48.629 -30.484 36.206 1.559 3.482 -0.131 H8 XU9 27
XU9 H9 H9 H 0 1 N N N N N N 50.807 -26.043 38.535 -3.533 1.246 -0.825 H9 XU9 28
XU9 H10 H10 H 0 1 N N N N N N 48.576 -25.754 39.645 -2.714 4.235 -0.342 H10 XU9 29
XU9 H11 H11 H 0 1 N N N N N N 47.787 -26.809 38.425 -4.353 3.644 -0.948 H11 XU9 30
XU9 H12 H12 H 0 1 N N N N N N 49.341 -24.156 37.768 -4.658 2.306 1.186 H12 XU9 31
XU9 H13 H13 H 0 1 N N N N N N 48.552 -25.212 36.548 -3.020 2.898 1.792 H13 XU9 32
XU9 H14 H14 H 0 1 N N N N N N 48.431 -32.140 34.393 4.001 3.058 -0.010 H14 XU9 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XU9 N1 C5 DOUB Y N 1
XU9 N1 N SING Y N 2
XU9 C5 C3 SING Y N 3
XU9 N C6 SING Y N 4
XU9 N C4 SING Y N 5
XU9 C6 C7 DOUB Y N 6
XU9 C3 C4 DOUB Y N 7
XU9 C3 C SING N N 8
XU9 O C DOUB N N 9
XU9 C4 C9 SING Y N 10
XU9 C7 C8 SING Y N 11
XU9 C O1 SING N N 12
XU9 C9 C8 DOUB Y N 13
XU9 C9 C10 SING N N 14
XU9 O1 C1 SING N N 15
XU9 C10 C11 TRIP N N 16
XU9 C1 C2 SING N N 17
XU9 C11 C12 SING N N 18
XU9 C14 C12 SING N N 19
XU9 C14 C13 SING N N 20
XU9 C12 C13 SING N N 21
XU9 C1 H1 SING N N 22
XU9 C1 H2 SING N N 23
XU9 C2 H3 SING N N 24
XU9 C2 H4 SING N N 25
XU9 C2 H5 SING N N 26
XU9 C5 H6 SING N N 27
XU9 C6 H7 SING N N 28
XU9 C8 H8 SING N N 29
XU9 C12 H9 SING N N 30
XU9 C13 H10 SING N N 31
XU9 C13 H11 SING N N 32
XU9 C14 H12 SING N N 33
XU9 C14 H13 SING N N 34
XU9 C7 H14 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XU9 SMILES ACDLabs 12.01 "O=C(OCC)c1cnn2cccc(C#CC3CC3)c12"
XU9 InChI InChI 1.06 InChI=1S/C15H14N2O2/c1-2-19-15(18)13-10-16-17-9-3-4-12(14(13)17)8-7-11-5-6-11/h3-4,9-11H,2,5-6H2,1H3
XU9 InChIKey InChI 1.06 JXKYSMBFBAAONQ-UHFFFAOYSA-N
XU9 SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)c1cnn2cccc(C#CC3CC3)c12"
XU9 SMILES CACTVS 3.385 "CCOC(=O)c1cnn2cccc(C#CC3CC3)c12"
XU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)c1cnn2c1c(ccc2)C#CC3CC3"
XU9 SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)c1cnn2c1c(ccc2)C#CC3CC3"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XU9 "SYSTEMATIC NAME" ACDLabs 12.01 "ethyl (8S)-4-(cyclopropylethynyl)pyrazolo[1,5-a]pyridine-3-carboxylate"
XU9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl 4-(2-cyclopropylethynyl)pyrazolo[1,5-a]pyridine-3-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XU9 'Create component' 2022-12-12 RCSB
XU9 'Initial release' 2023-04-26 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XU9 C1 C 9.417 1.468 1
XU9 C2 C 10.885 1.778 2
XU9 C3 C 7.018 -1.692 3
XU9 C5 C 7.893 -2.900 4
XU9 C6 C 4.299 -4.399 5
XU9 C8 C 3.000 -2.150 6
XU9 C10 C 4.299 0.101 7
XU9 C12 C 4.299 3.100 8
XU9 C13 C 3.549 4.399 9
XU9 N N 5.598 -3.650 10
XU9 C C 7.483 -0.267 11
XU9 O O 6.482 0.850 12
XU9 C11 C 4.299 1.601 13
XU9 C14 C 5.049 4.399 14
XU9 C4 C 5.598 -2.150 15
XU9 C7 C 3.000 -3.650 16
XU9 C9 C 4.299 -1.399 17
XU9 N1 N 7.018 -4.107 18
XU9 O1 O 8.951 0.043 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XU9 N1 C5 DOUBLE NONE 1
XU9 N1 N SINGLE NONE 2
XU9 C5 C3 SINGLE NONE 3
XU9 N C6 SINGLE NONE 4
XU9 N C4 SINGLE NONE 5
XU9 C6 C7 DOUBLE NONE 6
XU9 C3 C4 DOUBLE NONE 7
XU9 C3 C SINGLE NONE 8
XU9 O C DOUBLE NONE 9
XU9 C4 C9 SINGLE NONE 10
XU9 C7 C8 SINGLE NONE 11
XU9 C O1 SINGLE NONE 12
XU9 C9 C8 DOUBLE NONE 13
XU9 C9 C10 SINGLE NONE 14
XU9 O1 C1 SINGLE NONE 15
XU9 C10 C11 TRIPLE NONE 16
XU9 C1 C2 SINGLE NONE 17
XU9 C11 C12 SINGLE NONE 18
XU9 C14 C12 SINGLE NONE 19
XU9 C14 C13 SINGLE NONE 20
XU9 C12 C13 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XU9 MurckoScaffold S1 scaffold 'C(#CC1CC1)c1cccn2nccc12' InChI=1S/C12H10N2/c1-2-11(6-5-10-3-4-10)12-7-8-13-14(12)9-1/h1-2,7-10H,3-4H2 ZGZGDMWGWUDPPU-UHFFFAOYSA-N
XU9 cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
XU9 pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
XU9 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
XU9 Z1143452918 F4 fragment O=C(O)c1cnn2ccccc12 InChI=1S/C8H6N2O2/c11-8(12)6-5-9-10-4-2-1-3-7(6)10/h1-5H,(H,11,12) HRSDPDBQVZHCRC-UHFFFAOYSA-N
XU9 Z1124201124 F5 fragment 'CCOC(=O)c1cn[nH]c1' InChI=1S/C6H8N2O2/c1-2-10-6(9)5-3-7-8-4-5/h3-4H,2H2,1H3,(H,7,8) KACZQOKEFKFNDB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XU9 C3 S1 1
XU9 C5 S1 1
XU9 C6 S1 1
XU9 C8 S1 1
XU9 C10 S1 1
XU9 C12 S1 1
XU9 C13 S1 1
XU9 N S1 1
XU9 C11 S1 1
XU9 C14 S1 1
XU9 C4 S1 1
XU9 C7 S1 1
XU9 C9 S1 1
XU9 N1 S1 1
XU9 C12 F1 1
XU9 C14 F1 1
XU9 C13 F1 1
XU9 C5 F2 1
XU9 C3 F2 1
XU9 C4 F2 1
XU9 N F2 1
XU9 N1 F2 1
XU9 C6 F3 1
XU9 C7 F3 1
XU9 C8 F3 1
XU9 C9 F3 1
XU9 C4 F3 1
XU9 N F3 1
XU9 O1 F4 1
XU9 C F4 1
XU9 O F4 1
XU9 C3 F4 1
XU9 C5 F4 1
XU9 N1 F4 1
XU9 N F4 1
XU9 C6 F4 1
XU9 C7 F4 1
XU9 C8 F4 1
XU9 C9 F4 1
XU9 C4 F4 1
XU9 C2 F5 1
XU9 C1 F5 1
XU9 O1 F5 1
XU9 C F5 1
XU9 O F5 1
XU9 C3 F5 1
XU9 C5 F5 1
XU9 N1 F5 1
XU9 N F5 1
XU9 C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XU9
_pdbe_chem_comp_rdkit_properties.exactmw 254.106
_pdbe_chem_comp_rdkit_properties.amw 254.289
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.595
_pdbe_chem_comp_rdkit_properties.tpsa 43.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.949
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.116
_pdbe_chem_comp_rdkit_properties.chi0v 9.211
_pdbe_chem_comp_rdkit_properties.chi1v 4.983
_pdbe_chem_comp_rdkit_properties.chi2v 2.207
_pdbe_chem_comp_rdkit_properties.chi3v 2.207
_pdbe_chem_comp_rdkit_properties.chi4v 1.372
_pdbe_chem_comp_rdkit_properties.chi0n 23.211
_pdbe_chem_comp_rdkit_properties.chi1n 11.983
_pdbe_chem_comp_rdkit_properties.chi2n 2.207
_pdbe_chem_comp_rdkit_properties.chi3n 2.207
_pdbe_chem_comp_rdkit_properties.chi4n 1.372
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.280
_pdbe_chem_comp_rdkit_properties.kappa1 3.859
_pdbe_chem_comp_rdkit_properties.kappa2 4.771
_pdbe_chem_comp_rdkit_properties.kappa3 2.319
_pdbe_chem_comp_rdkit_properties.Phi 0.969
#
_pdbe_chem_comp_external_mappings.comp_id XU9
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id XU9
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XU9 C1 2.795 -1.740 -0.854 ETKDGv3 1
XU9 C2 3.404 -2.596 -1.953 ETKDGv3 2
XU9 C3 0.342 1.124 -1.344 ETKDGv3 3
XU9 C5 0.568 1.634 -2.710 ETKDGv3 4
XU9 C6 -2.167 3.648 -1.696 ETKDGv3 5
XU9 C8 -2.489 2.638 0.529 ETKDGv3 6
XU9 C10 -1.296 0.719 1.368 ETKDGv3 7
XU9 C12 -0.959 -1.198 3.201 ETKDGv3 8
XU9 C13 -1.589 -2.529 2.829 ETKDGv3 9
XU9 N -1.127 2.693 -1.895 ETKDGv3 10
XU9 C 1.210 0.151 -0.663 ETKDGv3 11
XU9 O 1.364 0.192 0.586 ETKDGv3 12
XU9 C11 -1.147 -0.143 2.198 ETKDGv3 13
XU9 C14 -0.083 -2.347 2.732 ETKDGv3 14
XU9 C4 -0.719 1.795 -0.889 ETKDGv3 15
XU9 C7 -2.824 3.637 -0.527 ETKDGv3 16
XU9 C9 -1.490 1.744 0.375 ETKDGv3 17
XU9 N1 -0.293 2.558 -3.004 ETKDGv3 18
XU9 O1 1.921 -0.775 -1.431 ETKDGv3 19
XU9 H1 2.227 -2.390 -0.154 ETKDGv3 20
XU9 H2 3.607 -1.225 -0.296 ETKDGv3 21
XU9 H3 3.981 -1.957 -2.655 ETKDGv3 22
XU9 H4 4.087 -3.349 -1.506 ETKDGv3 23
XU9 H5 2.602 -3.122 -2.512 ETKDGv3 24
XU9 H6 1.354 1.319 -3.384 ETKDGv3 25
XU9 H7 -2.417 4.363 -2.469 ETKDGv3 26
XU9 H8 -3.094 2.624 1.428 ETKDGv3 27
XU9 H9 -0.916 -0.952 4.283 ETKDGv3 28
XU9 H10 -1.912 -3.144 3.696 ETKDGv3 29
XU9 H11 -2.101 -2.574 1.843 ETKDGv3 30
XU9 H12 0.483 -2.856 3.541 ETKDGv3 31
XU9 H13 0.294 -2.289 1.688 ETKDGv3 32
XU9 H14 -3.621 4.348 -0.352 ETKDGv3 33
#