data_XV4
#
_chem_comp.id XV4
_chem_comp.name
N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H32 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-01-14
_chem_comp.pdbx_modified_date 2021-07-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 444.524
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XV4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LDL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XV4 C10 C1 C 0 1 N N N N N N 16.679 11.853 -6.697 -5.845 -2.027 1.132 C10 XV4 1
XV4 C15 C2 C 0 1 N N N N N N 10.135 15.712 -6.508 -0.702 2.660 0.363 C15 XV4 2
XV4 C17 C3 C 0 1 N N N N N N 7.703 16.307 -6.370 -2.092 2.424 2.425 C17 XV4 3
XV4 C20 C4 C 0 1 N N N N N N 11.323 12.743 -4.439 1.797 0.647 0.617 C20 XV4 4
XV4 C21 C5 C 0 1 Y N N N N N 11.050 12.383 -2.944 3.128 0.232 0.154 C21 XV4 5
XV4 C22 C6 C 0 1 Y N N N N N 10.196 13.156 -2.082 4.204 -0.000 0.953 C22 XV4 6
XV4 C24 C7 C 0 1 Y N N N N N 9.744 12.558 0.542 6.621 -0.731 0.378 C24 XV4 7
XV4 C26 C8 C 0 1 N N N N N N 9.006 14.363 1.926 8.458 -1.119 1.834 C26 XV4 8
XV4 C28 C9 C 0 1 Y N N N N N 10.894 10.583 1.452 6.978 -1.038 -1.977 C28 XV4 9
XV4 C02 C10 C 0 1 N N N N N N 12.533 14.924 -6.377 -1.553 0.651 -0.815 C02 XV4 10
XV4 C04 C11 C 0 1 N N S N N N 14.591 14.922 -7.887 -3.818 -0.003 -1.430 C04 XV4 11
XV4 C05 C12 C 0 1 N N N N N N 15.391 13.608 -7.984 -5.056 -0.482 -0.669 C05 XV4 12
XV4 C06 C13 C 0 1 N N S N N N 15.712 12.991 -6.571 -4.665 -1.620 0.277 C06 XV4 13
XV4 C07 C14 C 0 1 N N N N N N 16.412 14.008 -5.735 -4.320 -2.896 -0.525 C07 XV4 14
XV4 C08 C15 C 0 1 N N N N N N 17.406 13.306 -4.835 -4.880 -4.005 0.392 C08 XV4 15
XV4 C12 C16 C 0 1 N N N N N N 14.774 15.792 -9.121 -4.228 1.057 -2.454 C12 XV4 16
XV4 C14 C17 C 0 1 N N S N N N 11.071 14.556 -6.205 -0.550 1.147 0.194 C14 XV4 17
XV4 C16 C18 C 0 1 N N N N N N 8.701 15.126 -6.589 -2.060 2.969 0.996 C16 XV4 18
XV4 C18 C19 C 0 1 N N N N N N 8.313 14.543 -7.926 -2.279 4.483 1.023 C18 XV4 19
XV4 C23 C20 C 0 1 Y N N N N N 10.301 12.359 -0.668 5.284 -0.377 0.122 C23 XV4 20
XV4 C27 C21 C 0 1 Y N N N N N 10.070 11.594 1.657 7.453 -1.058 -0.673 C27 XV4 21
XV4 C29 C22 C 0 1 Y N N N N N 11.527 10.348 0.072 5.672 -0.694 -2.245 C29 XV4 22
XV4 C30 C23 C 0 1 Y N N N N N 11.241 11.197 -0.917 4.811 -0.361 -1.204 C30 XV4 23
XV4 N03 N1 N 0 1 N N N N N N 13.158 14.583 -7.673 -2.858 0.574 -0.486 N03 XV4 24
XV4 N09 N2 N 0 1 N N N N N N 17.743 12.035 -5.663 -5.945 -3.366 1.174 N09 XV4 25
XV4 N19 N3 N 0 1 N N N N N N 10.866 14.110 -4.847 0.805 0.842 -0.274 N19 XV4 26
XV4 N31 N4 N 0 1 Y N N N N N 11.608 11.336 -2.190 3.487 0.010 -1.163 N31 XV4 27
XV4 O01 O1 O 0 1 N N N N N N 13.150 15.492 -5.524 -1.187 0.322 -1.924 O01 XV4 28
XV4 O11 O2 O 0 1 N N N N N N 16.650 10.979 -7.467 -6.590 -1.256 1.700 O11 XV4 29
XV4 O13 O3 O 0 1 N N N N N N 15.884 16.041 -9.529 -4.933 2.110 -1.793 O13 XV4 30
XV4 O25 O4 O 0 1 N N N N N N 8.854 13.656 0.710 7.089 -0.750 1.652 O25 XV4 31
XV4 O32 O5 O 0 1 N N N N N N 12.072 12.098 -5.101 1.590 0.814 1.804 O32 XV4 32
XV4 H152 H1 H 0 0 N N N N N N 10.408 16.177 -7.467 0.093 3.036 1.007 H152 XV4 33
XV4 H151 H2 H 0 0 N N N N N N 10.191 16.463 -5.707 -0.638 3.143 -0.612 H151 XV4 34
XV4 H172 H3 H 0 0 N N N N N N 7.916 16.794 -5.407 -1.351 2.946 3.030 H172 XV4 35
XV4 H173 H4 H 0 0 N N N N N N 7.816 17.038 -7.184 -3.083 2.579 2.852 H173 XV4 36
XV4 H171 H5 H 0 0 N N N N N N 6.673 15.920 -6.365 -1.865 1.358 2.413 H171 XV4 37
XV4 H221 H6 H 0 0 N N N N N N 9.627 14.044 -2.316 4.228 0.088 2.029 H221 XV4 38
XV4 H262 H7 H 0 0 N N N N N N 8.280 15.188 1.964 8.703 -1.094 2.896 H262 XV4 39
XV4 H263 H8 H 0 0 N N N N N N 8.831 13.681 2.771 8.618 -2.126 1.448 H263 XV4 40
XV4 H261 H9 H 0 0 N N N N N N 10.026 14.770 1.989 9.098 -0.418 1.298 H261 XV4 41
XV4 H281 H10 H 0 0 N N N N N N 11.126 9.912 2.266 7.641 -1.296 -2.790 H281 XV4 42
XV4 H041 H11 H 0 0 N N N N N N 14.957 15.480 -7.013 -3.359 -0.848 -1.945 H041 XV4 43
XV4 H051 H12 H 0 0 N N N N N N 14.804 12.879 -8.562 -5.470 0.345 -0.091 H051 XV4 44
XV4 H052 H13 H 0 0 N N N N N N 16.339 13.810 -8.504 -5.803 -0.840 -1.378 H052 XV4 45
XV4 H061 H14 H 0 0 N N N N N N 14.780 12.660 -6.089 -3.825 -1.321 0.904 H061 XV4 46
XV4 H071 H15 H 0 0 N N N N N N 16.942 14.719 -6.386 -4.823 -2.897 -1.492 H071 XV4 47
XV4 H072 H16 H 0 0 N N N N N N 15.677 14.550 -5.121 -3.242 -2.999 -0.648 H072 XV4 48
XV4 H082 H17 H 0 0 N N N N N N 18.301 13.924 -4.668 -5.288 -4.819 -0.207 H082 XV4 49
XV4 H081 H18 H 0 0 N N N N N N 16.954 13.045 -3.867 -4.098 -4.379 1.053 H081 XV4 50
XV4 H121 H19 H 0 0 N N N N N N 14.293 16.757 -8.903 -3.337 1.462 -2.934 H121 XV4 51
XV4 H141 H20 H 0 0 N N N N N N 10.838 13.733 -6.897 -0.723 0.655 1.151 H141 XV4 52
XV4 H161 H21 H 0 0 N N N N N N 8.563 14.378 -5.795 -2.850 2.498 0.410 H161 XV4 53
XV4 H181 H22 H 0 0 N N N N N N 7.284 14.158 -7.874 -2.256 4.871 0.004 H181 XV4 54
XV4 H182 H23 H 0 0 N N N N N N 8.373 15.324 -8.698 -3.246 4.702 1.474 H182 XV4 55
XV4 H183 H24 H 0 0 N N N N N N 8.999 13.722 -8.181 -1.489 4.954 1.609 H183 XV4 56
XV4 H271 H25 H 0 0 N N N N N N 9.625 11.733 2.631 8.480 -1.330 -0.480 H271 XV4 57
XV4 H291 H26 H 0 0 N N N N N N 12.190 9.512 -0.094 5.316 -0.683 -3.265 H291 XV4 58
XV4 H031 H27 H 0 0 N N N N N N 12.628 14.133 -8.392 -3.161 0.900 0.375 H031 XV4 59
XV4 H091 H28 H 0 0 N N N N N N 18.536 11.441 -5.527 -6.632 -3.849 1.660 H091 XV4 60
XV4 H191 H29 H 0 0 N N N N N N 10.421 14.711 -4.182 0.987 0.780 -1.224 H191 XV4 61
XV4 H311 H30 H 0 0 N N N N N N 12.268 10.707 -2.601 2.902 0.103 -1.931 H311 XV4 62
XV4 H1 H31 H 0 1 N Y N N N N 14.239 15.293 -9.943 -4.872 0.605 -3.207 H1 XV4 63
XV4 H2 H32 H 0 1 N N N N N N 15.822 16.592 -10.301 -5.223 2.819 -2.383 H2 XV4 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XV4 O13 C12 SING N N 1
XV4 C12 C04 SING N N 2
XV4 C05 C04 SING N N 3
XV4 C05 C06 SING N N 4
XV4 C18 C16 SING N N 5
XV4 C04 N03 SING N N 6
XV4 N03 C02 SING N N 7
XV4 O11 C10 DOUB N N 8
XV4 C10 C06 SING N N 9
XV4 C10 N09 SING N N 10
XV4 C16 C15 SING N N 11
XV4 C16 C17 SING N N 12
XV4 C06 C07 SING N N 13
XV4 C15 C14 SING N N 14
XV4 C02 C14 SING N N 15
XV4 C02 O01 DOUB N N 16
XV4 C14 N19 SING N N 17
XV4 C07 C08 SING N N 18
XV4 N09 C08 SING N N 19
XV4 O32 C20 DOUB N N 20
XV4 N19 C20 SING N N 21
XV4 C20 C21 SING N N 22
XV4 C21 N31 SING Y N 23
XV4 C21 C22 DOUB Y N 24
XV4 N31 C30 SING Y N 25
XV4 C22 C23 SING Y N 26
XV4 C30 C23 DOUB Y N 27
XV4 C30 C29 SING Y N 28
XV4 C23 C24 SING Y N 29
XV4 C29 C28 DOUB Y N 30
XV4 C24 O25 SING N N 31
XV4 C24 C27 DOUB Y N 32
XV4 O25 C26 SING N N 33
XV4 C28 C27 SING Y N 34
XV4 C15 H152 SING N N 35
XV4 C15 H151 SING N N 36
XV4 C17 H172 SING N N 37
XV4 C17 H173 SING N N 38
XV4 C17 H171 SING N N 39
XV4 C22 H221 SING N N 40
XV4 C26 H262 SING N N 41
XV4 C26 H263 SING N N 42
XV4 C26 H261 SING N N 43
XV4 C28 H281 SING N N 44
XV4 C04 H041 SING N N 45
XV4 C05 H051 SING N N 46
XV4 C05 H052 SING N N 47
XV4 C06 H061 SING N N 48
XV4 C07 H071 SING N N 49
XV4 C07 H072 SING N N 50
XV4 C08 H082 SING N N 51
XV4 C08 H081 SING N N 52
XV4 C12 H121 SING N N 53
XV4 C14 H141 SING N N 54
XV4 C16 H161 SING N N 55
XV4 C18 H181 SING N N 56
XV4 C18 H182 SING N N 57
XV4 C18 H183 SING N N 58
XV4 C27 H271 SING N N 59
XV4 C29 H291 SING N N 60
XV4 N03 H031 SING N N 61
XV4 N09 H091 SING N N 62
XV4 N19 H191 SING N N 63
XV4 N31 H311 SING N N 64
XV4 C12 H1 SING N N 65
XV4 O13 H2 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XV4 SMILES ACDLabs 12.01 C3(C(CC(NC(C(CC(C)C)NC(c1nc2c(c1)c(OC)ccc2)=O)=O)CO)CCN3)=O
XV4 InChI InChI 1.03 InChI=1S/C23H32N4O5/c1-13(2)9-18(22(30)25-15(12-28)10-14-7-8-24-21(14)29)27-23(31)19-11-16-17(26-19)5-4-6-20(16)32-3/h4-6,11,13-15,18,26,28H,7-10,12H2,1-3H3,(H,24,29)(H,25,30)(H,27,31)/t14-,15-,18-/m0/s1
XV4 InChIKey InChI 1.03 WHTWOUANZWYZGR-MPGHIAIKSA-N
XV4 SMILES_CANONICAL CACTVS 3.385 COc1cccc2[nH]c(cc12)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O
XV4 SMILES CACTVS 3.385 COc1cccc2[nH]c(cc12)C(=O)N[CH](CC(C)C)C(=O)N[CH](CO)C[CH]3CCNC3=O
XV4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)c2cc3c([nH]2)cccc3OC
XV4 SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)c2cc3c([nH]2)cccc3OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XV4 "SYSTEMATIC NAME" ACDLabs 12.01 N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
XV4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 4-methoxy-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XV4 'Create component' 2021-01-14 RCSB
XV4 'Initial release' 2021-07-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XV4 C10 C 11.783 4.663 1
XV4 C15 C 12.393 -4.501 2
XV4 C17 C 14.643 -3.202 3
XV4 C20 C 9.393 -4.501 4
XV4 C21 C 7.893 -4.501 5
XV4 C22 C 7.018 -3.294 6
XV4 C24 C 4.299 -3.001 7
XV4 C26 C 3.000 -0.751 8
XV4 C28 C 3.000 -5.251 9
XV4 C02 C 12.393 -1.903 10
XV4 C04 C 12.393 0.695 11
XV4 C05 C 11.643 1.994 12
XV4 C06 C 12.393 3.293 13
XV4 C07 C 13.885 3.450 14
XV4 C08 C 14.196 4.917 15
XV4 C12 C 13.893 0.695 16
XV4 C14 C 11.643 -3.202 17
XV4 C16 C 13.893 -4.501 18
XV4 C18 C 14.643 -5.800 19
XV4 C23 C 5.598 -3.751 20
XV4 C27 C 3.000 -3.751 21
XV4 C29 C 4.299 -6.001 22
XV4 C30 C 5.598 -5.251 23
XV4 N03 N 11.643 -0.604 24
XV4 N09 N 12.897 5.667 25
XV4 N19 N 10.143 -3.202 26
XV4 N31 N 7.018 -5.708 27
XV4 O01 O 13.893 -1.903 28
XV4 O11 O 10.316 4.975 29
XV4 O13 O 14.643 1.994 30
XV4 O25 O 4.299 -1.501 31
XV4 O32 O 10.143 -5.800 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XV4 O13 C12 SINGLE NONE 1
XV4 C04 C12 SINGLE BEGINWEDGE 2
XV4 C05 C04 SINGLE NONE 3
XV4 C06 C05 SINGLE BEGINWEDGE 4
XV4 C18 C16 SINGLE NONE 5
XV4 C04 N03 SINGLE NONE 6
XV4 N03 C02 SINGLE NONE 7
XV4 O11 C10 DOUBLE NONE 8
XV4 C10 C06 SINGLE NONE 9
XV4 C10 N09 SINGLE NONE 10
XV4 C16 C15 SINGLE NONE 11
XV4 C16 C17 SINGLE NONE 12
XV4 C06 C07 SINGLE NONE 13
XV4 C14 C15 SINGLE BEGINDASH 14
XV4 C02 C14 SINGLE NONE 15
XV4 C02 O01 DOUBLE NONE 16
XV4 C14 N19 SINGLE NONE 17
XV4 C07 C08 SINGLE NONE 18
XV4 N09 C08 SINGLE NONE 19
XV4 O32 C20 DOUBLE NONE 20
XV4 N19 C20 SINGLE NONE 21
XV4 C20 C21 SINGLE NONE 22
XV4 C21 N31 SINGLE NONE 23
XV4 C21 C22 DOUBLE NONE 24
XV4 N31 C30 SINGLE NONE 25
XV4 C22 C23 SINGLE NONE 26
XV4 C30 C23 DOUBLE NONE 27
XV4 C30 C29 SINGLE NONE 28
XV4 C23 C24 SINGLE NONE 29
XV4 C29 C28 DOUBLE NONE 30
XV4 C24 O25 SINGLE NONE 31
XV4 C24 C27 DOUBLE NONE 32
XV4 O25 C26 SINGLE NONE 33
XV4 C28 C27 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XV4 MurckoScaffold S1 scaffold 'O=C(CNC(=O)c1cc2ccccc2[nH]1)NCC[C@@H]1CCNC1=O' InChI=1S/C17H20N4O3/c22-15(18-7-5-11-6-8-19-16(11)23)10-20-17(24)14-9-12-3-1-2-4-13(12)21-14/h1-4,9,11,21H,5-8,10H2,(H,18,22)(H,19,23)(H,20,24)/t11-/m1/s1 PKFNNRVTCDIUOS-LLVKDONJSA-N
XV4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
XV4 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
XV4 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
XV4 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XV4 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
XV4 Z1429867185 F6 fragment 'COc1cccc2[nH]ccc12' InChI=1S/C9H9NO/c1-11-9-4-2-3-8-7(9)5-6-10-8/h2-6,10H,1H3 LUNOXNMCFPFPMO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XV4 C10 S1 1
XV4 C20 S1 1
XV4 C21 S1 1
XV4 C22 S1 1
XV4 C24 S1 1
XV4 C28 S1 1
XV4 C02 S1 1
XV4 C04 S1 1
XV4 C05 S1 1
XV4 C06 S1 1
XV4 C07 S1 1
XV4 C08 S1 1
XV4 C14 S1 1
XV4 C23 S1 1
XV4 C27 S1 1
XV4 C29 S1 1
XV4 C30 S1 1
XV4 N03 S1 1
XV4 N09 S1 1
XV4 N19 S1 1
XV4 N31 S1 1
XV4 O01 S1 1
XV4 O11 S1 1
XV4 O32 S1 1
XV4 N03 F1 1
XV4 C02 F1 1
XV4 O01 F1 1
XV4 C14 F1 1
XV4 N09 F1 2
XV4 C10 F1 2
XV4 O11 F1 2
XV4 C06 F1 2
XV4 N19 F1 3
XV4 C20 F1 3
XV4 O32 F1 3
XV4 C21 F1 3
XV4 C30 F2 1
XV4 C23 F2 1
XV4 C22 F2 1
XV4 C21 F2 1
XV4 N31 F2 1
XV4 C24 F2 1
XV4 C27 F2 1
XV4 C28 F2 1
XV4 C29 F2 1
XV4 O01 F3 1
XV4 C02 F3 1
XV4 C14 F3 1
XV4 N19 F3 1
XV4 C24 F4 1
XV4 C23 F4 1
XV4 C30 F4 1
XV4 C29 F4 1
XV4 C28 F4 1
XV4 C27 F4 1
XV4 C21 F5 1
XV4 C22 F5 1
XV4 C23 F5 1
XV4 C30 F5 1
XV4 N31 F5 1
XV4 C26 F6 1
XV4 O25 F6 1
XV4 C24 F6 1
XV4 C27 F6 1
XV4 C28 F6 1
XV4 C29 F6 1
XV4 C30 F6 1
XV4 N31 F6 1
XV4 C21 F6 1
XV4 C22 F6 1
XV4 C23 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XV4
_pdbe_chem_comp_rdkit_properties.exactmw 444.237
_pdbe_chem_comp_rdkit_properties.amw 444.532
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.522
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 232.110
_pdbe_chem_comp_rdkit_properties.tpsa 132.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.379
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.228
_pdbe_chem_comp_rdkit_properties.chi0v 15.330
_pdbe_chem_comp_rdkit_properties.chi1v 8.014
_pdbe_chem_comp_rdkit_properties.chi2v 3.357
_pdbe_chem_comp_rdkit_properties.chi3v 3.357
_pdbe_chem_comp_rdkit_properties.chi4v 2.096
_pdbe_chem_comp_rdkit_properties.chi0n 47.330
_pdbe_chem_comp_rdkit_properties.chi1n 23.711
_pdbe_chem_comp_rdkit_properties.chi2n 3.357
_pdbe_chem_comp_rdkit_properties.chi3n 3.357
_pdbe_chem_comp_rdkit_properties.chi4n 2.096
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.070
_pdbe_chem_comp_rdkit_properties.kappa1 5.699
_pdbe_chem_comp_rdkit_properties.kappa2 10.496
_pdbe_chem_comp_rdkit_properties.kappa3 5.587
_pdbe_chem_comp_rdkit_properties.Phi 1.869
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XV4 UniChem PDBe XV4
XV4 UniChem SureChEMBL SCHEMBL23824244
XV4 UniChem PubChem 91023588
XV4 UniChem BindingDb 423460
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XV4 C10 4.690 2.225 -1.013 ETKDGv3 1
XV4 C15 1.165 -2.912 -0.944 ETKDGv3 2
XV4 C17 2.042 -4.840 0.526 ETKDGv3 3
XV4 C20 -2.079 -1.336 0.362 ETKDGv3 4
XV4 C21 -3.122 -0.459 -0.204 ETKDGv3 5
XV4 C22 -4.258 -0.131 0.419 ETKDGv3 6
XV4 C24 -6.260 1.466 -0.303 ETKDGv3 7
XV4 C26 -8.252 1.865 1.156 ETKDGv3 8
XV4 C28 -5.836 2.463 -2.526 ETKDGv3 9
XV4 C02 0.924 -1.365 1.045 ETKDGv3 10
XV4 C04 1.886 0.967 1.354 ETKDGv3 11
XV4 C05 2.721 1.954 0.509 ETKDGv3 12
XV4 C06 3.944 1.279 -0.149 ETKDGv3 13
XV4 C07 5.020 0.831 0.867 ETKDGv3 14
XV4 C08 6.376 1.337 0.340 ETKDGv3 15
XV4 C12 0.751 1.692 2.098 ETKDGv3 16
XV4 C14 0.231 -2.371 0.168 ETKDGv3 17
XV4 C16 2.395 -3.744 -0.488 ETKDGv3 18
XV4 C18 3.556 -2.877 0.018 ETKDGv3 19
XV4 C23 -4.969 0.774 -0.475 ETKDGv3 20
XV4 C27 -6.672 2.282 -1.303 ETKDGv3 21
XV4 C29 -4.662 1.820 -2.652 ETKDGv3 22
XV4 C30 -4.234 0.936 -1.557 ETKDGv3 23
XV4 N03 1.327 -0.095 0.511 ETKDGv3 24
XV4 N09 6.068 2.272 -0.721 ETKDGv3 25
XV4 N19 -0.952 -1.742 -0.431 ETKDGv3 26
XV4 N31 -3.034 0.185 -1.479 ETKDGv3 27
XV4 O01 1.128 -1.639 2.259 ETKDGv3 28
XV4 O11 4.173 2.881 -1.957 ETKDGv3 29
XV4 O13 -0.209 2.182 1.199 ETKDGv3 30
XV4 O25 -6.997 1.256 0.872 ETKDGv3 31
XV4 O32 -2.178 -1.725 1.558 ETKDGv3 32
XV4 H152 1.507 -2.074 -1.589 ETKDGv3 33
XV4 H151 0.551 -3.569 -1.600 ETKDGv3 34
XV4 H172 1.792 -4.403 1.515 ETKDGv3 35
XV4 H173 1.181 -5.439 0.161 ETKDGv3 36
XV4 H171 2.908 -5.524 0.658 ETKDGv3 37
XV4 H221 -4.576 -0.461 1.400 ETKDGv3 38
XV4 H262 -8.605 1.522 2.150 ETKDGv3 39
XV4 H263 -9.001 1.570 0.392 ETKDGv3 40
XV4 H261 -8.144 2.970 1.179 ETKDGv3 41
XV4 H281 -6.178 3.120 -3.315 ETKDGv3 42
XV4 H041 2.554 0.515 2.119 ETKDGv3 43
XV4 H051 3.066 2.795 1.151 ETKDGv3 44
XV4 H052 2.077 2.386 -0.288 ETKDGv3 45
XV4 H061 3.626 0.417 -0.774 ETKDGv3 46
XV4 H071 4.839 1.277 1.870 ETKDGv3 47
XV4 H072 5.026 -0.275 0.971 ETKDGv3 48
XV4 H082 6.954 1.846 1.141 ETKDGv3 49
XV4 H081 6.971 0.494 -0.073 ETKDGv3 50
XV4 H121 1.164 2.512 2.730 ETKDGv3 51
XV4 H141 -0.116 -3.228 0.785 ETKDGv3 52
XV4 H161 2.771 -4.262 -1.399 ETKDGv3 53
XV4 H181 3.342 -2.442 1.013 ETKDGv3 54
XV4 H182 3.771 -2.059 -0.701 ETKDGv3 55
XV4 H183 4.473 -3.498 0.111 ETKDGv3 56
XV4 H271 -7.609 2.818 -1.239 ETKDGv3 57
XV4 H291 -4.049 1.948 -3.535 ETKDGv3 58
XV4 H031 1.132 0.107 -0.496 ETKDGv3 59
XV4 H091 6.776 2.809 -1.270 ETKDGv3 60
XV4 H191 -0.965 -1.561 -1.459 ETKDGv3 61
XV4 H311 -2.244 0.187 -2.161 ETKDGv3 62
XV4 H1 0.252 0.976 2.784 ETKDGv3 63
XV4 H2 0.074 3.098 0.945 ETKDGv3 64
#