data_Y12
#
_chem_comp.id Y12
_chem_comp.name "4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H21 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-11-10
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 367.395
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y12
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2EW5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y12 C2 C2 C 0 1 Y N N N N N -74.428 -66.830 56.459 -9.477 -0.430 -0.277 C2 Y12 1
Y12 C3 C3 C 0 1 Y N N N N N -75.588 -67.633 56.646 -8.882 -0.417 0.971 C3 Y12 2
Y12 C4 C4 C 0 1 Y N N N N N -76.875 -67.026 56.700 -7.604 0.088 1.122 C4 Y12 3
Y12 C5 C5 C 0 1 Y N N N N N -77.017 -65.616 56.570 -6.921 0.578 0.025 C5 Y12 4
Y12 C7 C7 C 0 1 N N N N N N -78.416 -64.979 56.623 -5.528 1.128 0.189 C7 Y12 5
Y12 C8 C8 C 0 1 N N N N N N -79.244 -65.516 55.441 -4.509 0.002 -0.001 C8 Y12 6
Y12 N9 N9 N 0 1 N N N N N N -78.906 -64.882 54.150 -3.155 0.537 0.159 N9 Y12 7
Y12 C10 C10 C 0 1 N N N N N N -79.556 -65.317 53.032 -2.089 -0.279 0.033 C10 Y12 8
Y12 O27 O27 O 0 1 N N N N N N -80.397 -66.224 53.127 -2.252 -1.459 -0.213 O27 Y12 9
Y12 C11 C11 C 0 1 N N N N N N -79.279 -64.707 51.688 -0.736 0.255 0.192 C11 Y12 10
Y12 C12 C12 C 0 1 N N N N N N -79.896 -65.114 50.532 0.330 -0.561 0.067 C12 Y12 11
Y12 C13 C13 C 0 1 Y N N N N N -79.764 -64.478 49.126 1.690 -0.025 0.227 C13 Y12 12
Y12 C18 C18 C 0 1 Y N N N N N -80.710 -64.788 48.090 2.798 -0.869 0.096 C18 Y12 13
Y12 C17 C17 C 0 1 Y N N N N N -80.652 -64.171 46.799 4.073 -0.358 0.242 C17 Y12 14
Y12 O23 O23 O 0 1 N N N N N N -81.631 -64.519 45.815 5.152 -1.176 0.116 O23 Y12 15
Y12 C24 C24 C 0 1 N N N N N N -82.712 -63.713 45.538 4.977 -2.499 -0.035 C24 Y12 16
Y12 O26 O26 O 0 1 N N N N N N -82.970 -62.620 46.079 3.871 -2.976 0.056 O26 Y12 17
Y12 C25 C25 C 0 1 N N N N N N -83.615 -64.264 44.484 6.161 -3.387 -0.319 C25 Y12 18
Y12 C16 C16 C 0 1 Y N N N N N -79.620 -63.212 46.517 4.253 0.994 0.530 C16 Y12 19
Y12 O19 O19 O 0 1 N N N N N N -79.568 -62.567 45.240 5.508 1.493 0.678 O19 Y12 20
Y12 C20 C20 C 0 1 N N N N N N -78.761 -63.012 44.250 6.218 1.857 -0.402 C20 Y12 21
Y12 O22 O22 O 0 1 N N N N N N -78.024 -63.975 44.337 5.783 1.647 -1.509 O22 Y12 22
Y12 C21 C21 C 0 1 N N N N N N -78.832 -62.212 42.988 7.556 2.529 -0.233 C21 Y12 23
Y12 C15 C15 C 0 1 Y N N N N N -78.646 -62.891 47.544 3.154 1.833 0.660 C15 Y12 24
Y12 C14 C14 C 0 1 Y N N N N N -78.729 -63.525 48.843 1.880 1.333 0.510 C14 Y12 25
Y12 C6 C6 C 0 1 Y N N N N N -75.854 -64.814 56.386 -7.518 0.570 -1.222 C6 Y12 26
Y12 C1 C1 C 0 1 Y N N N N N -74.564 -65.426 56.330 -8.795 0.061 -1.373 C1 Y12 27
Y12 H2 H2 H 0 1 N N N N N N -73.451 -67.288 56.416 -10.476 -0.825 -0.395 H2 Y12 28
Y12 H3 H3 H 0 1 N N N N N N -75.492 -68.704 56.747 -9.416 -0.801 1.828 H3 Y12 29
Y12 H4 H4 H 0 1 N N N N N N -77.751 -67.641 56.841 -7.139 0.098 2.097 H4 Y12 30
Y12 H71 1H7 H 0 1 N N N N N N -78.333 -63.884 56.557 -5.419 1.551 1.188 H71 Y12 31
Y12 H72 2H7 H 0 1 N N N N N N -78.908 -65.240 57.571 -5.354 1.905 -0.555 H72 Y12 32
Y12 H81 1H8 H 0 1 N N N N N N -80.299 -65.287 55.651 -4.618 -0.420 -1.000 H81 Y12 33
Y12 H82 2H8 H 0 1 N N N N N N -79.055 -66.596 55.353 -4.683 -0.775 0.743 H82 Y12 34
Y12 HN9 HN9 H 0 1 N N N N N N -78.221 -64.155 54.097 -3.025 1.478 0.355 HN9 Y12 35
Y12 H11 H11 H 0 1 N N N N N N -78.557 -63.906 51.628 -0.592 1.303 0.411 H11 Y12 36
Y12 H12 H12 H 0 1 N N N N N N -80.546 -65.973 50.611 0.186 -1.609 -0.152 H12 Y12 37
Y12 H18 H18 H 0 1 N N N N N N -81.489 -65.509 48.291 2.656 -1.918 -0.122 H18 Y12 38
Y12 H251 1H25 H 0 0 N N N N N N -83.227 -65.234 44.140 6.587 -3.735 0.622 H251 Y12 39
Y12 H252 2H25 H 0 0 N N N N N N -83.658 -63.564 43.636 5.839 -4.244 -0.911 H252 Y12 40
Y12 H253 3H25 H 0 0 N N N N N N -84.624 -64.399 44.899 6.913 -2.825 -0.873 H253 Y12 41
Y12 H211 1H21 H 0 0 N N N N N N -79.747 -62.477 42.437 7.979 2.748 -1.213 H211 Y12 42
Y12 H212 2H21 H 0 0 N N N N N N -77.952 -62.431 42.365 7.429 3.457 0.324 H212 Y12 43
Y12 H213 3H21 H 0 0 N N N N N N -78.849 -61.140 43.233 8.228 1.867 0.313 H213 Y12 44
Y12 H15 H15 H 0 1 N N N N N N -77.860 -62.180 47.339 3.299 2.881 0.878 H15 Y12 45
Y12 H14 H14 H 0 1 N N N N N N -78.005 -63.278 49.606 1.027 1.988 0.612 H14 Y12 46
Y12 H6 H6 H 0 1 N N N N N N -75.947 -63.742 56.289 -6.985 0.954 -2.079 H6 Y12 47
Y12 H1 H1 H 0 1 N N N N N N -73.686 -64.813 56.188 -9.259 0.050 -2.348 H1 Y12 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y12 C2 C3 DOUB Y N 1
Y12 C2 C1 SING Y N 2
Y12 C2 H2 SING N N 3
Y12 C3 C4 SING Y N 4
Y12 C3 H3 SING N N 5
Y12 C4 C5 DOUB Y N 6
Y12 C4 H4 SING N N 7
Y12 C5 C7 SING N N 8
Y12 C5 C6 SING Y N 9
Y12 C7 C8 SING N N 10
Y12 C7 H71 SING N N 11
Y12 C7 H72 SING N N 12
Y12 C8 N9 SING N N 13
Y12 C8 H81 SING N N 14
Y12 C8 H82 SING N N 15
Y12 N9 C10 SING N N 16
Y12 N9 HN9 SING N N 17
Y12 C10 O27 DOUB N N 18
Y12 C10 C11 SING N N 19
Y12 C11 C12 DOUB N E 20
Y12 C11 H11 SING N N 21
Y12 C12 C13 SING N N 22
Y12 C12 H12 SING N N 23
Y12 C13 C18 SING Y N 24
Y12 C13 C14 DOUB Y N 25
Y12 C18 C17 DOUB Y N 26
Y12 C18 H18 SING N N 27
Y12 C17 O23 SING N N 28
Y12 C17 C16 SING Y N 29
Y12 O23 C24 SING N N 30
Y12 C24 O26 DOUB N N 31
Y12 C24 C25 SING N N 32
Y12 C25 H251 SING N N 33
Y12 C25 H252 SING N N 34
Y12 C25 H253 SING N N 35
Y12 C16 O19 SING N N 36
Y12 C16 C15 DOUB Y N 37
Y12 O19 C20 SING N N 38
Y12 C20 O22 DOUB N N 39
Y12 C20 C21 SING N N 40
Y12 C21 H211 SING N N 41
Y12 C21 H212 SING N N 42
Y12 C21 H213 SING N N 43
Y12 C15 C14 SING Y N 44
Y12 C15 H15 SING N N 45
Y12 C14 H14 SING N N 46
Y12 C6 C1 DOUB Y N 47
Y12 C6 H6 SING N N 48
Y12 C1 H1 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y12 SMILES ACDLabs 10.04 O=C(Oc1cc(ccc1OC(=O)C)\C=C\C(=O)NCCc2ccccc2)C
Y12 SMILES_CANONICAL CACTVS 3.341 CC(=O)Oc1ccc(/C=C/C(=O)NCCc2ccccc2)cc1OC(C)=O
Y12 SMILES CACTVS 3.341 CC(=O)Oc1ccc(C=CC(=O)NCCc2ccccc2)cc1OC(C)=O
Y12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC(=O)Oc1ccc(cc1OC(=O)C)\C=C\C(=O)NCCc2ccccc2
Y12 SMILES "OpenEye OEToolkits" 1.5.0 CC(=O)Oc1ccc(cc1OC(=O)C)C=CC(=O)NCCc2ccccc2
Y12 InChI InChI 1.03 InChI=1S/C21H21NO5/c1-15(23)26-19-10-8-18(14-20(19)27-16(2)24)9-11-21(25)22-13-12-17-6-4-3-5-7-17/h3-11,14H,12-13H2,1-2H3,(H,22,25)/b11-9+
Y12 InChIKey InChI 1.03 GARHCDOTUULBOQ-PKNBQFBNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y12 "SYSTEMATIC NAME" ACDLabs 10.04 "4-{(1E)-3-oxo-3-[(2-phenylethyl)amino]prop-1-en-1-yl}benzene-1,2-diyl diacetate"
Y12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[2-acetyloxy-5-[(E)-3-oxo-3-(phenethylamino)prop-1-enyl]phenyl] ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y12 'Create component' 2005-11-10 RCSB
Y12 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id Y12
_pdbe_chem_comp_drugbank_details.drugbank_id DB08753
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id Y12
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08753
_pdbe_chem_comp_drugbank_classification.parent 'Cinnamic acid amides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Cinnamic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as cinnamic acid amides. These are amides of cinnamic acids. Cinnamic acid is an aromatic compound containing a benzene and a carboxylic acid group forming 3-phenylprop-2-enoic acid.'
#
_pdbe_chem_comp_drugbank_targets.comp_id Y12
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08753
_pdbe_chem_comp_drugbank_targets.name 'Peptide deformylase'
_pdbe_chem_comp_drugbank_targets.organism 'Helicobacter pylori'
_pdbe_chem_comp_drugbank_targets.uniprot_id Q672W7
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y12 C2 C 17.290 -7.125 1
Y12 C3 C 15.990 -7.875 2
Y12 C4 C 14.691 -7.125 3
Y12 C5 C 14.691 -5.625 4
Y12 C7 C 13.392 -4.875 5
Y12 C8 C 13.392 -3.375 6
Y12 N9 N 12.093 -2.625 7
Y12 C10 C 12.093 -1.125 8
Y12 O27 O 13.392 -0.375 9
Y12 C11 C 10.794 -0.375 10
Y12 C12 C 10.794 1.125 11
Y12 C13 C 9.495 1.875 12
Y12 C18 C 9.495 3.375 13
Y12 C17 C 8.196 4.125 14
Y12 O23 O 8.196 5.625 15
Y12 C24 C 9.495 6.375 16
Y12 O26 O 10.794 5.625 17
Y12 C25 C 9.495 7.875 18
Y12 C16 C 6.897 3.375 19
Y12 O19 O 5.598 4.125 20
Y12 C20 C 4.299 3.375 21
Y12 O22 O 4.299 1.875 22
Y12 C21 C 3.000 4.125 23
Y12 C15 C 6.897 1.875 24
Y12 C14 C 8.196 1.125 25
Y12 C6 C 15.990 -4.875 26
Y12 C1 C 17.290 -5.625 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y12 C2 C3 DOUBLE NONE 1
Y12 C2 C1 SINGLE NONE 2
Y12 C3 C4 SINGLE NONE 3
Y12 C4 C5 DOUBLE NONE 4
Y12 C5 C7 SINGLE NONE 5
Y12 C5 C6 SINGLE NONE 6
Y12 C7 C8 SINGLE NONE 7
Y12 C8 N9 SINGLE NONE 8
Y12 N9 C10 SINGLE NONE 9
Y12 C10 O27 DOUBLE NONE 10
Y12 C10 C11 SINGLE ENDUPRIGHT 11
Y12 C11 C12 DOUBLE NONE 12
Y12 C12 C13 SINGLE ENDUPRIGHT 13
Y12 C13 C18 DOUBLE NONE 14
Y12 C13 C14 SINGLE NONE 15
Y12 C18 C17 SINGLE NONE 16
Y12 C17 O23 SINGLE NONE 17
Y12 C17 C16 DOUBLE NONE 18
Y12 O23 C24 SINGLE NONE 19
Y12 C24 O26 DOUBLE NONE 20
Y12 C24 C25 SINGLE NONE 21
Y12 C16 O19 SINGLE NONE 22
Y12 C16 C15 SINGLE NONE 23
Y12 O19 C20 SINGLE NONE 24
Y12 C20 O22 DOUBLE NONE 25
Y12 C20 C21 SINGLE NONE 26
Y12 C15 C14 DOUBLE NONE 27
Y12 C6 C1 DOUBLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y12 MurckoScaffold S1 scaffold O=C(/C=C/c1ccccc1)NCCc1ccccc1 InChI=1S/C17H17NO/c19-17(12-11-15-7-3-1-4-8-15)18-14-13-16-9-5-2-6-10-16/h1-12H,13-14H2,(H,18,19)/b12-11+ BOSUEWCVNFFBGV-VAWYXSNFSA-N
Y12 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Y12 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y12 C2 S1 1
Y12 C3 S1 1
Y12 C4 S1 1
Y12 C5 S1 1
Y12 C7 S1 1
Y12 C8 S1 1
Y12 N9 S1 1
Y12 C10 S1 1
Y12 O27 S1 1
Y12 C11 S1 1
Y12 C12 S1 1
Y12 C13 S1 1
Y12 C18 S1 1
Y12 C17 S1 1
Y12 C16 S1 1
Y12 C15 S1 1
Y12 C14 S1 1
Y12 C6 S1 1
Y12 C1 S1 1
Y12 N9 F1 1
Y12 C10 F1 1
Y12 O27 F1 1
Y12 C11 F1 1
Y12 C2 F2 1
Y12 C3 F2 1
Y12 C4 F2 1
Y12 C5 F2 1
Y12 C6 F2 1
Y12 C1 F2 1
Y12 C13 F2 2
Y12 C18 F2 2
Y12 C17 F2 2
Y12 C16 F2 2
Y12 C15 F2 2
Y12 C14 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id Y12
_pdbe_chem_comp_rdkit_properties.exactmw 367.142
_pdbe_chem_comp_rdkit_properties.amw 367.401
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.190
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 186.907
_pdbe_chem_comp_rdkit_properties.tpsa 81.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.875
_pdbe_chem_comp_rdkit_properties.CrippenMR 99.498
_pdbe_chem_comp_rdkit_properties.chi0v 12.988
_pdbe_chem_comp_rdkit_properties.chi1v 6.626
_pdbe_chem_comp_rdkit_properties.chi2v 2.268
_pdbe_chem_comp_rdkit_properties.chi3v 2.268
_pdbe_chem_comp_rdkit_properties.chi4v 1.360
_pdbe_chem_comp_rdkit_properties.chi0n 33.988
_pdbe_chem_comp_rdkit_properties.chi1n 17.073
_pdbe_chem_comp_rdkit_properties.chi2n 2.268
_pdbe_chem_comp_rdkit_properties.chi3n 2.268
_pdbe_chem_comp_rdkit_properties.chi4n 1.360
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.410
_pdbe_chem_comp_rdkit_properties.kappa1 5.792
_pdbe_chem_comp_rdkit_properties.kappa2 9.914
_pdbe_chem_comp_rdkit_properties.kappa3 7.153
_pdbe_chem_comp_rdkit_properties.Phi 2.127
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Y12 UniChem DrugBank DB08753
Y12 UniChem PDBe Y12
Y12 UniChem ZINC ZINC000016051983
Y12 UniChem 'PubChem TPHARMA' 125302666
Y12 UniChem BRENDA 62711
Y12 UniChem 'Probes And Drugs' PD004563
Y12 UniChem PubChem 11957394
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y12 C2 8.945 0.568 -0.244 ETKDGv3 1
Y12 C3 8.273 -0.219 0.605 ETKDGv3 2
Y12 C4 6.817 -0.414 0.439 ETKDGv3 3
Y12 C5 6.164 0.187 -0.573 ETKDGv3 4
Y12 C7 4.676 0.026 -0.730 ETKDGv3 5
Y12 C8 3.930 1.093 0.075 ETKDGv3 6
Y12 N9 2.487 0.954 -0.105 ETKDGv3 7
Y12 C10 1.725 -0.081 0.534 ETKDGv3 8
Y12 O27 2.296 -0.898 1.309 ETKDGv3 9
Y12 C11 0.274 -0.176 0.286 ETKDGv3 10
Y12 C12 -0.485 -1.135 0.838 ETKDGv3 11
Y12 C13 -1.943 -1.273 0.599 ETKDGv3 12
Y12 C18 -2.725 -0.238 0.234 ETKDGv3 13
Y12 C17 -4.187 -0.425 0.021 ETKDGv3 14
Y12 O23 -4.998 0.624 -0.438 ETKDGv3 15
Y12 C24 -4.567 1.688 -1.239 ETKDGv3 16
Y12 O26 -3.487 1.621 -1.886 ETKDGv3 17
Y12 C25 -5.458 2.869 -1.420 ETKDGv3 18
Y12 C16 -4.744 -1.626 0.287 ETKDGv3 19
Y12 O19 -6.119 -1.859 0.146 ETKDGv3 20
Y12 C20 -7.120 -1.021 0.652 ETKDGv3 21
Y12 O22 -6.849 -0.133 1.506 ETKDGv3 22
Y12 C21 -8.537 -1.248 0.251 ETKDGv3 23
Y12 C15 -3.885 -2.760 0.684 ETKDGv3 24
Y12 C14 -2.567 -2.596 0.831 ETKDGv3 25
Y12 C6 6.914 1.068 -1.502 ETKDGv3 26
Y12 C1 8.232 1.245 -1.346 ETKDGv3 27
Y12 H2 10.011 0.713 -0.122 ETKDGv3 28
Y12 H3 8.793 -0.713 1.415 ETKDGv3 29
Y12 H4 6.286 -1.042 1.144 ETKDGv3 30
Y12 H71 4.367 -0.989 -0.397 ETKDGv3 31
Y12 H72 4.403 0.117 -1.804 ETKDGv3 32
Y12 H81 4.243 2.101 -0.279 ETKDGv3 33
Y12 H82 4.184 1.016 1.155 ETKDGv3 34
Y12 HN9 1.988 1.670 -0.680 ETKDGv3 35
Y12 H11 -0.163 0.547 -0.389 ETKDGv3 36
Y12 H12 -0.013 -1.889 1.456 ETKDGv3 37
Y12 H18 -2.312 0.756 0.145 ETKDGv3 38
Y12 H251 -6.106 2.994 -0.527 ETKDGv3 39
Y12 H252 -4.851 3.789 -1.554 ETKDGv3 40
Y12 H253 -6.097 2.716 -2.315 ETKDGv3 41
Y12 H211 -9.026 -1.922 0.984 ETKDGv3 42
Y12 H212 -8.575 -1.713 -0.756 ETKDGv3 43
Y12 H213 -9.084 -0.282 0.220 ETKDGv3 44
Y12 H15 -4.329 -3.731 0.862 ETKDGv3 45
Y12 H14 -1.956 -3.440 1.126 ETKDGv3 46
Y12 H6 6.397 1.572 -2.309 ETKDGv3 47
Y12 H1 8.778 1.887 -2.025 ETKDGv3 48
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