data_Y2N
#
_chem_comp.id Y2N
_chem_comp.name
"5-[2-(dimethylamino)ethoxy]-2-methyl-N-{(1R)-1-[(3P,5M)-3-(1-methyl-1H-pyrazol-4-yl)-5-(1,3-thiazol-5-yl)phenyl]ethyl}benzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H31 N5 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-11-14
_chem_comp.pdbx_modified_date 2024-03-29
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 489.632
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y2N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UUW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y2N C1 C1 C 0 1 N N N N N N 47.599 32.818 1.103 -3.039 5.056 0.197 C1 Y2N 1
Y2N C2 C2 C 0 1 Y N N N N N 48.753 33.693 0.685 -3.511 3.625 0.168 C2 Y2N 2
Y2N C3 C3 C 0 1 Y N N N N N 50.004 33.170 0.313 -2.630 2.606 -0.198 C3 Y2N 3
Y2N C4 C4 C 0 1 N N N N N N 50.212 31.689 0.212 -1.232 2.928 -0.556 C4 Y2N 4
Y2N C11 C5 C 0 1 Y N N N N N 51.638 27.745 -3.538 5.336 0.544 0.720 C11 Y2N 5
Y2N C12 C6 C 0 1 Y N N N N N 52.104 27.663 -4.831 6.247 -0.395 1.107 C12 Y2N 6
Y2N C14 C7 C 0 1 N N N N N N 51.169 26.822 -7.004 8.543 -0.368 2.110 C14 Y2N 7
Y2N C16 C8 C 0 1 Y N N N N N 50.370 27.141 -3.607 5.895 1.811 0.979 C16 Y2N 8
Y2N C10 C9 C 0 1 Y N N N N N 52.312 28.369 -2.377 4.001 0.280 0.126 C10 Y2N 9
Y2N C17 C10 C 0 1 Y N N N N N 53.670 28.666 -2.435 3.577 -1.028 -0.080 C17 Y2N 10
Y2N C18 C11 C 0 1 Y N N N N N 54.292 29.288 -1.357 2.322 -1.269 -0.637 C18 Y2N 11
Y2N C19 C12 C 0 1 Y N N N N N 55.722 29.627 -1.420 1.864 -2.657 -0.860 C19 Y2N 12
Y2N C20 C13 C 0 1 Y N N N N N 56.706 29.108 -2.207 2.557 -3.780 -0.572 C20 Y2N 13
Y2N C22 C14 C 0 1 Y N N N N N 57.937 30.554 -1.127 0.747 -4.788 -1.383 C22 Y2N 14
Y2N C24 C15 C 0 1 Y N N N N N 53.548 29.604 -0.224 1.499 -0.196 -0.983 C24 Y2N 15
Y2N C26 C16 C 0 1 Y N N N N N 51.050 34.032 -0.028 -3.072 1.283 -0.223 C26 Y2N 16
Y2N C27 C17 C 0 1 Y N N N N N 50.860 35.405 -0.012 -4.383 0.990 0.114 C27 Y2N 17
Y2N C29 C18 C 0 1 N N N N N N 51.699 37.632 -0.396 -6.182 -0.528 0.450 C29 Y2N 18
Y2N C30 C19 C 0 1 N N N N N N 52.634 38.192 -1.436 -6.486 -2.025 0.364 C30 Y2N 19
Y2N C32 C20 C 0 1 N N N N N N 54.861 37.565 -0.572 -6.283 -2.585 2.711 C32 Y2N 20
Y2N C33 C21 C 0 1 N N N N N N 53.723 39.535 0.330 -5.560 -4.163 1.023 C33 Y2N 21
Y2N C34 C22 C 0 1 Y N N N N N 49.633 35.931 0.350 -5.252 2.010 0.476 C34 Y2N 22
Y2N C35 C23 C 0 1 Y N N N N N 48.600 35.078 0.690 -4.813 3.320 0.507 C35 Y2N 23
Y2N C6 C24 C 0 1 N N R N N N 51.374 29.702 1.070 1.033 2.254 -1.150 C6 Y2N 24
Y2N C7 C25 C 0 1 N N N N N N 52.077 29.336 2.373 1.129 2.504 -2.657 C7 Y2N 25
Y2N C8 C26 C 0 1 Y N N N N N 52.190 29.313 -0.150 1.926 1.100 -0.775 C8 Y2N 26
Y2N C9 C27 C 0 1 Y N N N N N 51.584 28.690 -1.235 3.167 1.343 -0.219 C9 Y2N 27
Y2N N13 N1 N 0 1 Y N N N N N 51.162 27.061 -5.568 7.325 0.256 1.586 N13 Y2N 28
Y2N N15 N2 N 0 1 Y N N N N N 50.077 26.726 -4.829 7.082 1.632 1.496 N15 Y2N 29
Y2N N21 N3 N 0 1 Y N N N N N 57.965 29.635 -2.041 1.926 -4.894 -0.866 N21 Y2N 30
Y2N N31 N4 N 0 1 N N N N N N 53.929 38.685 -0.874 -5.696 -2.743 1.374 N31 Y2N 31
Y2N N5 N5 N 0 1 N N N N N N 51.077 31.138 1.075 -0.352 1.936 -0.795 N5 Y2N 32
Y2N O25 O1 O 0 1 N N N N N N 49.612 31.026 -0.628 -0.876 4.088 -0.635 O25 Y2N 33
Y2N O28 O2 O 0 1 N N N N N N 51.906 36.210 -0.388 -4.818 -0.297 0.090 O28 Y2N 34
Y2N S23 S1 S 0 1 Y N N N N N 56.398 30.841 -0.414 0.314 -3.142 -1.542 S23 Y2N 35
Y2N H1B H1 H 0 1 N N N N N N 47.642 32.648 2.189 -3.097 5.478 -0.806 H1B Y2N 36
Y2N H1A H2 H 0 1 N N N N N N 46.651 33.314 0.847 -3.671 5.633 0.872 H1A Y2N 37
Y2N H1C H3 H 0 1 N N N N N N 47.662 31.853 0.578 -2.007 5.091 0.547 H1C Y2N 38
Y2N H12 H4 H 0 1 N N N N N N 53.059 28.020 -5.187 6.125 -1.466 1.041 H12 Y2N 39
Y2N H14C H5 H 0 0 N N N N N N 50.214 26.367 -7.305 9.256 -0.512 1.299 H14C Y2N 40
Y2N H14B H6 H 0 0 N N N N N N 51.303 27.777 -7.534 8.983 0.276 2.871 H14B Y2N 41
Y2N H14A H7 H 0 0 N N N N N N 51.995 26.142 -7.258 8.295 -1.334 2.551 H14A Y2N 42
Y2N H16 H8 H 0 1 N N N N N N 49.710 27.029 -2.759 5.426 2.763 0.784 H16 Y2N 43
Y2N H17 H9 H 0 1 N N N N N N 54.241 28.414 -3.316 4.219 -1.854 0.189 H17 Y2N 44
Y2N H20 H10 H 0 1 N N N N N N 56.507 28.324 -2.923 3.546 -3.763 -0.136 H20 Y2N 45
Y2N H22 H11 H 0 1 N N N N N N 58.820 31.102 -0.833 0.122 -5.621 -1.670 H22 Y2N 46
Y2N H24 H12 H 0 1 N N N N N N 54.034 30.084 0.613 0.526 -0.380 -1.415 H24 Y2N 47
Y2N H26 H13 H 0 1 N N N N N N 52.012 33.626 -0.305 -2.395 0.491 -0.505 H26 Y2N 48
Y2N H29B H14 H 0 0 N N N N N N 50.656 37.863 -0.658 -6.834 0.015 -0.234 H29B Y2N 49
Y2N H29A H15 H 0 0 N N N N N N 51.931 38.056 0.592 -6.353 -0.180 1.468 H29A Y2N 50
Y2N H30B H16 H 0 0 N N N N N N 52.852 37.402 -2.169 -7.547 -2.191 0.548 H30B Y2N 51
Y2N H30A H17 H 0 0 N N N N N N 52.132 39.031 -1.939 -6.226 -2.392 -0.628 H30A Y2N 52
Y2N H32B H18 H 0 0 N N N N N N 55.799 37.968 -0.162 -7.297 -2.984 2.712 H32B Y2N 53
Y2N H32A H19 H 0 0 N N N N N N 54.398 36.892 0.165 -5.679 -3.127 3.439 H32A Y2N 54
Y2N H32C H20 H 0 0 N N N N N N 55.075 37.007 -1.495 -6.308 -1.528 2.975 H32C Y2N 55
Y2N H33B H21 H 0 0 N N N N N N 54.697 39.875 0.710 -4.990 -4.256 0.098 H33B Y2N 56
Y2N H33C H22 H 0 0 N N N N N N 53.109 40.407 0.062 -5.039 -4.687 1.825 H33C Y2N 57
Y2N H33A H23 H 0 0 N N N N N N 53.210 38.951 1.108 -6.549 -4.600 0.886 H33A Y2N 58
Y2N H34 H24 H 0 1 N N N N N N 49.483 37.000 0.367 -6.274 1.778 0.739 H34 Y2N 59
Y2N H35 H25 H 0 1 N N N N N N 47.645 35.498 0.968 -5.495 4.109 0.790 H35 Y2N 60
Y2N H6 H26 H 0 1 N N N N N N 50.424 29.148 1.033 1.349 3.148 -0.613 H6 Y2N 61
Y2N H7C H27 H 0 1 N N N N N N 52.304 28.260 2.378 0.483 3.339 -2.928 H7C Y2N 62
Y2N H7B H28 H 0 1 N N N N N N 53.013 29.908 2.458 2.160 2.741 -2.921 H7B Y2N 63
Y2N H7A H29 H 0 1 N N N N N N 51.422 29.576 3.223 0.813 1.610 -3.194 H7A Y2N 64
Y2N H9 H30 H 0 1 N N N N N N 50.532 28.451 -1.191 3.496 2.359 -0.058 H9 Y2N 65
Y2N H5 H32 H 0 1 N N N N N N 51.534 31.725 1.743 -0.636 1.010 -0.733 H5 Y2N 66
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y2N C1 C2 SING N N 1
Y2N C2 C3 DOUB Y N 2
Y2N C3 C4 SING N N 3
Y2N C4 N5 SING N N 4
Y2N N5 C6 SING N N 5
Y2N C6 C7 SING N N 6
Y2N C6 C8 SING N N 7
Y2N C8 C9 DOUB Y N 8
Y2N C9 C10 SING Y N 9
Y2N C10 C11 SING N N 10
Y2N C11 C12 DOUB Y N 11
Y2N C12 N13 SING Y N 12
Y2N N13 C14 SING N N 13
Y2N N13 N15 SING Y N 14
Y2N N15 C16 DOUB Y N 15
Y2N C10 C17 DOUB Y N 16
Y2N C17 C18 SING Y N 17
Y2N C18 C19 SING N N 18
Y2N C19 C20 DOUB Y N 19
Y2N C20 N21 SING Y N 20
Y2N N21 C22 DOUB Y N 21
Y2N C22 S23 SING Y N 22
Y2N C18 C24 DOUB Y N 23
Y2N C4 O25 DOUB N N 24
Y2N C3 C26 SING Y N 25
Y2N C26 C27 DOUB Y N 26
Y2N C27 O28 SING N N 27
Y2N O28 C29 SING N N 28
Y2N C29 C30 SING N N 29
Y2N C30 N31 SING N N 30
Y2N N31 C32 SING N N 31
Y2N N31 C33 SING N N 32
Y2N C27 C34 SING Y N 33
Y2N C34 C35 DOUB Y N 34
Y2N C35 C2 SING Y N 35
Y2N C24 C8 SING Y N 36
Y2N C16 C11 SING Y N 37
Y2N S23 C19 SING Y N 38
Y2N C1 H1B SING N N 39
Y2N C1 H1A SING N N 40
Y2N C1 H1C SING N N 41
Y2N C12 H12 SING N N 42
Y2N C14 H14C SING N N 43
Y2N C14 H14B SING N N 44
Y2N C14 H14A SING N N 45
Y2N C16 H16 SING N N 46
Y2N C17 H17 SING N N 47
Y2N C20 H20 SING N N 48
Y2N C22 H22 SING N N 49
Y2N C24 H24 SING N N 50
Y2N C26 H26 SING N N 51
Y2N C29 H29B SING N N 52
Y2N C29 H29A SING N N 53
Y2N C30 H30B SING N N 54
Y2N C30 H30A SING N N 55
Y2N C32 H32B SING N N 56
Y2N C32 H32A SING N N 57
Y2N C32 H32C SING N N 58
Y2N C33 H33B SING N N 59
Y2N C33 H33C SING N N 60
Y2N C33 H33A SING N N 61
Y2N C34 H34 SING N N 62
Y2N C35 H35 SING N N 63
Y2N C6 H6 SING N N 64
Y2N C7 H7C SING N N 65
Y2N C7 H7B SING N N 66
Y2N C7 H7A SING N N 67
Y2N C9 H9 SING N N 68
Y2N N5 H5 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y2N SMILES ACDLabs 12.01 "CN(C)CCOc1cc(c(C)cc1)C(=O)NC(C)c1cc(cc(c1)c1cncs1)c1cn(C)nc1"
Y2N InChI InChI 1.06 "InChI=1S/C27H31N5O2S/c1-18-6-7-24(34-9-8-31(3)4)13-25(18)27(33)30-19(2)20-10-21(23-14-29-32(5)16-23)12-22(11-20)26-15-28-17-35-26/h6-7,10-17,19H,8-9H2,1-5H3,(H,30,33)"
Y2N InChIKey InChI 1.06 HGOCITQKFLPHLS-UHFFFAOYSA-N
Y2N SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3cnn(C)c3)c4scnc4"
Y2N SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(OCCN(C)C)ccc1C)c2cc(cc(c2)c3cnn(C)c3)c4scnc4"
Y2N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cc(cc(c2)c3cncs3)c4cnn(c4)C)OCCN(C)C"
Y2N SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cc(cc(c2)c3cncs3)c4cnn(c4)C)OCCN(C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y2N "SYSTEMATIC NAME" ACDLabs 12.01 "5-[2-(dimethylamino)ethoxy]-2-methyl-N-{(1R)-1-[(3P,5M)-3-(1-methyl-1H-pyrazol-4-yl)-5-(1,3-thiazol-5-yl)phenyl]ethyl}benzamide"
Y2N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2-(dimethylamino)ethoxy]-2-methyl-~{N}-[(1~{R})-1-[3-(1-methylpyrazol-4-yl)-5-(1,3-thiazol-5-yl)phenyl]ethyl]benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y2N 'Create component' 2023-11-14 RCSB
Y2N 'Initial release' 2024-04-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y2N C1 C -1.465 -1.396 1
Y2N C2 C -2.764 -0.648 2
Y2N C3 C -2.765 0.856 3
Y2N C4 C -1.468 1.605 4
Y2N C11 C 3.732 -2.891 5
Y2N C12 C 4.946 -3.771 6
Y2N C14 C 5.367 -6.411 7
Y2N C16 C 2.519 -3.773 8
Y2N C10 C 3.731 -1.390 9
Y2N C17 C 5.030 -0.642 10
Y2N C18 C 5.029 0.862 11
Y2N C19 C 6.326 1.610 12
Y2N C20 C 7.697 1.003 13
Y2N C22 C 7.949 3.416 14
Y2N C24 C 3.728 1.607 15
Y2N C26 C -4.066 1.601 16
Y2N C27 C -5.365 0.854 17
Y2N C29 C -7.962 0.850 18
Y2N C30 C -9.262 1.599 19
Y2N C32 C -11.860 1.596 20
Y2N C33 C -10.559 -0.652 21
Y2N C34 C -5.364 -0.650 22
Y2N C35 C -4.063 -1.396 23
Y2N C6 C 1.130 1.607 24
Y2N C7 C 1.129 3.107 25
Y2N C8 C 2.429 0.860 26
Y2N C9 C 2.430 -0.644 27
Y2N N13 N 4.482 -5.198 28
Y2N N15 N 2.985 -5.199 29
Y2N N21 N 8.701 2.117 30
Y2N N31 N -10.560 0.848 31
Y2N N5 N -0.168 0.856 32
Y2N O25 O -1.469 3.105 33
Y2N O28 O -6.664 1.601 34
Y2N S23 S 6.483 3.102 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y2N C1 C2 SINGLE NONE 1
Y2N C2 C3 DOUBLE NONE 2
Y2N C3 C4 SINGLE NONE 3
Y2N C4 N5 SINGLE NONE 4
Y2N N5 C6 SINGLE NONE 5
Y2N C6 C7 SINGLE BEGINDASH 6
Y2N C6 C8 SINGLE NONE 7
Y2N C8 C9 DOUBLE NONE 8
Y2N C9 C10 SINGLE NONE 9
Y2N C10 C11 SINGLE NONE 10
Y2N C11 C12 DOUBLE NONE 11
Y2N C12 N13 SINGLE NONE 12
Y2N N13 C14 SINGLE NONE 13
Y2N N13 N15 SINGLE NONE 14
Y2N N15 C16 DOUBLE NONE 15
Y2N C10 C17 DOUBLE NONE 16
Y2N C17 C18 SINGLE NONE 17
Y2N C18 C19 SINGLE NONE 18
Y2N C19 C20 DOUBLE NONE 19
Y2N C20 N21 SINGLE NONE 20
Y2N N21 C22 DOUBLE NONE 21
Y2N C22 S23 SINGLE NONE 22
Y2N C18 C24 DOUBLE NONE 23
Y2N C4 O25 DOUBLE NONE 24
Y2N C3 C26 SINGLE NONE 25
Y2N C26 C27 DOUBLE NONE 26
Y2N C27 O28 SINGLE NONE 27
Y2N O28 C29 SINGLE NONE 28
Y2N C29 C30 SINGLE NONE 29
Y2N C30 N31 SINGLE NONE 30
Y2N N31 C32 SINGLE NONE 31
Y2N N31 C33 SINGLE NONE 32
Y2N C27 C34 SINGLE NONE 33
Y2N C34 C35 DOUBLE NONE 34
Y2N C35 C2 SINGLE NONE 35
Y2N C24 C8 SINGLE NONE 36
Y2N C16 C11 SINGLE NONE 37
Y2N S23 C19 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y2N MurckoScaffold S1 scaffold 'O=C(NCc1cc(-c2cn[nH]c2)cc(-c2cncs2)c1)c1ccccc1' InChI=1S/C20H16N4OS/c25-20(15-4-2-1-3-5-15)22-9-14-6-16(18-10-23-24-11-18)8-17(7-14)19-12-21-13-26-19/h1-8,10-13H,9H2,(H,22,25)(H,23,24) FFYPQIYMDVTIDD-UHFFFAOYSA-N
Y2N amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Y2N phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
Y2N pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
Y2N thiazole F4 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y2N C2 S1 1
Y2N C3 S1 1
Y2N C4 S1 1
Y2N C11 S1 1
Y2N C12 S1 1
Y2N C16 S1 1
Y2N C10 S1 1
Y2N C17 S1 1
Y2N C18 S1 1
Y2N C19 S1 1
Y2N C20 S1 1
Y2N C22 S1 1
Y2N C24 S1 1
Y2N C26 S1 1
Y2N C27 S1 1
Y2N C34 S1 1
Y2N C35 S1 1
Y2N C6 S1 1
Y2N C8 S1 1
Y2N C9 S1 1
Y2N N13 S1 1
Y2N N15 S1 1
Y2N N21 S1 1
Y2N N5 S1 1
Y2N O25 S1 1
Y2N S23 S1 1
Y2N N5 F1 1
Y2N C4 F1 1
Y2N O25 F1 1
Y2N C3 F1 1
Y2N C2 F2 1
Y2N C3 F2 1
Y2N C26 F2 1
Y2N C27 F2 1
Y2N C34 F2 1
Y2N C35 F2 1
Y2N C10 F2 2
Y2N C9 F2 2
Y2N C8 F2 2
Y2N C24 F2 2
Y2N C18 F2 2
Y2N C17 F2 2
Y2N C12 F3 1
Y2N C11 F3 1
Y2N C16 F3 1
Y2N N15 F3 1
Y2N N13 F3 1
Y2N C19 F4 1
Y2N C20 F4 1
Y2N N21 F4 1
Y2N C22 F4 1
Y2N S23 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Y2N
_pdbe_chem_comp_rdkit_properties.exactmw 489.220
_pdbe_chem_comp_rdkit_properties.amw 489.645
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 66
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.296
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 253.551
_pdbe_chem_comp_rdkit_properties.tpsa 72.280
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.564
_pdbe_chem_comp_rdkit_properties.CrippenMR 136.809
_pdbe_chem_comp_rdkit_properties.chi0v 17.777
_pdbe_chem_comp_rdkit_properties.chi1v 9.773
_pdbe_chem_comp_rdkit_properties.chi2v 4.504
_pdbe_chem_comp_rdkit_properties.chi3v 4.504
_pdbe_chem_comp_rdkit_properties.chi4v 2.877
_pdbe_chem_comp_rdkit_properties.chi0n 47.961
_pdbe_chem_comp_rdkit_properties.chi1n 24.404
_pdbe_chem_comp_rdkit_properties.chi2n 3.821
_pdbe_chem_comp_rdkit_properties.chi3n 3.821
_pdbe_chem_comp_rdkit_properties.chi4n 2.399
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.490
_pdbe_chem_comp_rdkit_properties.kappa1 6.835
_pdbe_chem_comp_rdkit_properties.kappa2 10.839
_pdbe_chem_comp_rdkit_properties.kappa3 6.148
_pdbe_chem_comp_rdkit_properties.Phi 2.117
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y2N C1 0.316 1.163 1.473 ETKDGv3 1
Y2N C2 -1.085 0.758 1.096 ETKDGv3 2
Y2N C3 -1.358 -0.390 0.426 ETKDGv3 3
Y2N C4 -0.313 -1.368 0.060 ETKDGv3 4
Y2N C11 4.852 1.158 0.616 ETKDGv3 5
Y2N C12 5.952 1.841 0.312 ETKDGv3 6
Y2N C14 6.904 4.107 1.012 ETKDGv3 7
Y2N C16 4.227 1.888 1.729 ETKDGv3 8
Y2N C10 4.342 -0.073 -0.041 ETKDGv3 9
Y2N C17 4.803 -0.474 -1.242 ETKDGv3 10
Y2N C18 4.269 -1.694 -1.900 ETKDGv3 11
Y2N C19 4.816 -2.110 -3.217 ETKDGv3 12
Y2N C20 4.242 -2.944 -4.093 ETKDGv3 13
Y2N C22 6.094 -2.519 -5.361 ETKDGv3 14
Y2N C24 3.308 -2.403 -1.278 ETKDGv3 15
Y2N C26 -2.753 -0.680 0.012 ETKDGv3 16
Y2N C27 -3.755 0.150 0.331 ETKDGv3 17
Y2N C29 -6.202 0.621 0.195 ETKDGv3 18
Y2N C30 -7.441 -0.056 -0.413 ETKDGv3 19
Y2N C32 -8.726 1.997 -0.848 ETKDGv3 20
Y2N C33 -9.078 0.780 1.224 ETKDGv3 21
Y2N C34 -3.458 1.381 1.105 ETKDGv3 22
Y2N C35 -2.202 1.664 1.464 ETKDGv3 23
Y2N C6 1.691 -2.782 0.710 ETKDGv3 24
Y2N C7 2.234 -3.494 1.954 ETKDGv3 25
Y2N C8 2.781 -1.974 0.039 ETKDGv3 26
Y2N C9 3.287 -0.874 0.625 ETKDGv3 27
Y2N N13 6.052 2.944 1.200 ETKDGv3 28
Y2N N15 4.931 2.928 2.032 ETKDGv3 29
Y2N N21 4.978 -3.171 -5.308 ETKDGv3 30
Y2N N31 -8.709 0.678 -0.197 ETKDGv3 31
Y2N N5 0.559 -1.916 1.059 ETKDGv3 32
Y2N O25 -0.228 -1.756 -1.137 ETKDGv3 33
Y2N O28 -5.055 -0.177 -0.080 ETKDGv3 34
Y2N S23 6.362 -1.540 -3.903 ETKDGv3 35
Y2N H1B 0.369 2.252 1.681 ETKDGv3 36
Y2N H1A 1.020 0.953 0.642 ETKDGv3 37
Y2N H1C 0.635 0.620 2.386 ETKDGv3 38
Y2N H12 6.666 1.617 -0.469 ETKDGv3 39
Y2N H14C 6.435 4.796 0.279 ETKDGv3 40
Y2N H14B 7.899 3.790 0.636 ETKDGv3 41
Y2N H14A 7.036 4.635 1.980 ETKDGv3 42
Y2N H16 3.295 1.643 2.220 ETKDGv3 43
Y2N H17 5.551 0.109 -1.760 ETKDGv3 44
Y2N H20 3.280 -3.410 -3.935 ETKDGv3 45
Y2N H22 6.768 -2.576 -6.205 ETKDGv3 46
Y2N H24 2.918 -3.311 -1.716 ETKDGv3 47
Y2N H26 -2.968 -1.583 -0.547 ETKDGv3 48
Y2N H29B -6.056 1.625 -0.254 ETKDGv3 49
Y2N H29A -6.319 0.714 1.295 ETKDGv3 50
Y2N H30B -7.277 -0.188 -1.505 ETKDGv3 51
Y2N H30A -7.535 -1.080 0.011 ETKDGv3 52
Y2N H32B -9.766 2.390 -0.864 ETKDGv3 53
Y2N H32A -8.385 1.917 -1.902 ETKDGv3 54
Y2N H32C -8.085 2.728 -0.309 ETKDGv3 55
Y2N H33B -10.134 1.112 1.310 ETKDGv3 56
Y2N H33C -8.436 1.511 1.762 ETKDGv3 57
Y2N H33A -8.999 -0.211 1.719 ETKDGv3 58
Y2N H34 -4.249 2.063 1.385 ETKDGv3 59
Y2N H35 -2.003 2.568 2.026 ETKDGv3 60
Y2N H6 1.327 -3.574 0.019 ETKDGv3 61
Y2N H7C 1.436 -4.122 2.405 ETKDGv3 62
Y2N H7B 2.580 -2.762 2.714 ETKDGv3 63
Y2N H7A 3.084 -4.154 1.676 ETKDGv3 64
Y2N H9 2.920 -0.572 1.597 ETKDGv3 65
Y2N H5 0.353 -1.718 2.065 ETKDGv3 66
#