data_Y5I
#
_chem_comp.id Y5I
_chem_comp.name
"3-[2-fluoranyl-4-[3-[2-fluoranyl-4-(5-methyl-1,3,4-thiadiazol-2-yl)phenoxy]propoxy]phenyl]propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H20 F2 N2 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-06-12
_chem_comp.pdbx_modified_date 2024-05-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 434.456
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y5I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8PBO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y5I C21 C1 C 0 1 Y N N N N N 16.846 34.271 9.382 5.599 1.477 -0.267 C21 Y5I 1
Y5I C20 C2 C 0 1 Y N N N N N 16.613 32.983 9.756 4.355 2.076 -0.295 C20 Y5I 2
Y5I C18 C3 C 0 1 Y N N N N N 19.919 28.347 15.333 -6.413 1.127 0.335 C18 Y5I 3
Y5I C16 C4 C 0 1 N N N N N N 19.023 30.381 18.064 -8.294 -1.321 -0.677 C16 Y5I 4
Y5I C15 C5 C 0 1 N N N N N N 19.083 28.861 17.673 -7.723 -0.976 0.700 C15 Y5I 5
Y5I C14 C6 C 0 1 Y N N N N N 18.883 28.617 16.189 -6.417 -0.243 0.533 C14 Y5I 6
Y5I C6 C7 C 0 1 Y N N N N N 18.410 32.182 8.418 3.310 -0.064 0.063 C6 Y5I 7
Y5I C4 C8 C 0 1 Y N N N N N 17.836 34.538 8.458 5.703 0.098 -0.072 C4 Y5I 8
Y5I C2 C9 C 0 1 Y N N N N N 18.815 38.027 6.928 9.031 -1.953 0.069 C2 Y5I 9
Y5I O3 O1 O 0 1 N N N N N N 17.843 30.270 20.058 -10.030 -2.277 0.598 O3 Y5I 10
Y5I C1 C10 C 0 1 N N N N N N 19.264 39.219 6.146 10.124 -2.985 0.167 C1 Y5I 11
Y5I C9 C11 C 0 1 N N N N N N 17.118 28.370 10.066 -0.428 1.889 -0.042 C9 Y5I 12
Y5I C11 C12 C 0 1 Y N N N N N 18.428 28.201 13.509 -4.017 1.103 0.230 C11 Y5I 13
Y5I C12 C13 C 0 1 Y N N N N N 17.355 28.505 14.329 -4.025 -0.271 0.423 C12 Y5I 14
Y5I N1 N1 N 0 1 Y N N N N N 18.297 38.159 8.147 9.208 -0.686 -0.121 N1 Y5I 15
Y5I N2 N2 N 0 1 Y N N N N N 17.916 36.943 8.760 8.185 0.052 -0.180 N2 Y5I 16
Y5I C3 C14 C 0 1 Y N N N N N 18.145 35.894 8.017 7.033 -0.547 -0.041 C3 Y5I 17
Y5I C5 C15 C 0 1 Y N N N N N 18.590 33.480 7.951 4.549 -0.669 0.093 C5 Y5I 18
Y5I C7 C16 C 0 1 Y N N N N N 17.401 31.909 9.331 3.209 1.307 -0.125 C7 Y5I 19
Y5I O1 O2 O 0 1 N N N N N N 17.070 30.661 9.756 1.986 1.900 -0.153 O1 Y5I 20
Y5I C8 C17 C 0 1 N N N N N N 17.754 29.498 9.316 0.850 1.050 0.018 C8 Y5I 21
Y5I C10 C18 C 0 1 N N N N N N 17.036 28.595 11.563 -1.645 0.979 0.140 C10 Y5I 22
Y5I O2 O3 O 0 1 N N N N N N 18.247 28.085 12.160 -2.838 1.763 0.084 O2 Y5I 23
Y5I C13 C19 C 0 1 Y N N N N N 17.603 28.663 15.675 -5.224 -0.940 0.577 C13 Y5I 24
Y5I C17 C20 C 0 1 N N N N N N 18.915 30.542 19.569 -9.600 -2.054 -0.509 C17 Y5I 25
Y5I O4 O4 O 0 1 N N N N N N 19.905 30.871 20.249 -10.286 -2.458 -1.590 O4 Y5I 26
Y5I F1 F1 F 0 1 N N N N N N 21.174 28.384 15.843 -7.580 1.806 0.292 F1 Y5I 27
Y5I C19 C21 C 0 1 Y N N N N N 19.733 28.144 14.002 -5.214 1.802 0.186 C19 Y5I 28
Y5I F2 F2 F 0 1 N N N N N N 15.633 32.745 10.654 4.252 3.409 -0.488 F2 Y5I 29
Y5I S1 S1 S 0 1 Y N N N N N 18.852 36.319 6.478 7.351 -2.267 0.185 S1 Y5I 30
Y5I H19 H1 H 0 1 N N N N N N 16.262 35.076 9.804 6.489 2.073 -0.399 H19 Y5I 31
Y5I H16 H2 H 0 1 N N N N N N 19.937 30.881 17.712 -8.462 -0.403 -1.240 H16 Y5I 32
Y5I H17 H3 H 0 1 N N N N N N 18.146 30.842 17.587 -7.589 -1.954 -1.215 H17 Y5I 33
Y5I H14 H4 H 0 1 N N N N N N 18.295 28.327 18.224 -8.429 -0.343 1.238 H14 Y5I 34
Y5I H15 H5 H 0 1 N N N N N N 20.067 28.464 17.963 -7.555 -1.894 1.264 H15 Y5I 35
Y5I H5 H6 H 0 1 N N N N N N 19.054 31.388 8.071 2.417 -0.657 0.195 H5 Y5I 36
Y5I H1 H7 H 0 1 N N N N N N 19.656 38.892 5.171 10.435 -3.088 1.207 H1 Y5I 37
Y5I H2 H8 H 0 1 N N N N N N 18.412 39.897 5.990 9.753 -3.943 -0.198 H2 Y5I 38
Y5I H3 H9 H 0 1 N N N N N N 20.054 39.745 6.701 10.976 -2.671 -0.437 H3 Y5I 39
Y5I H8 H10 H 0 1 N N N N N N 16.097 28.230 9.681 -0.410 2.636 0.752 H8 Y5I 40
Y5I H9 H11 H 0 1 N N N N N N 17.706 27.459 9.885 -0.490 2.388 -1.009 H9 Y5I 41
Y5I H12 H12 H 0 1 N N N N N N 16.358 28.614 13.928 -3.094 -0.817 0.458 H12 Y5I 42
Y5I H4 H13 H 0 1 N N N N N N 19.325 33.671 7.184 4.626 -1.736 0.239 H4 Y5I 43
Y5I H6 H14 H 0 1 N N N N N N 17.628 29.362 8.232 0.911 0.551 0.985 H6 Y5I 44
Y5I H7 H15 H 0 1 N N N N N N 18.826 29.566 9.555 0.832 0.303 -0.776 H7 Y5I 45
Y5I H10 H16 H 0 1 N N N N N N 16.941 29.670 11.774 -1.663 0.233 -0.653 H10 Y5I 46
Y5I H11 H17 H 0 1 N N N N N N 16.165 28.062 11.973 -1.583 0.480 1.107 H11 Y5I 47
Y5I H13 H18 H 0 1 N N N N N N 16.773 28.827 16.346 -5.229 -2.009 0.732 H13 Y5I 48
Y5I H20 H19 H 0 1 N N N N N N 19.672 30.868 21.170 -11.119 -2.924 -1.433 H20 Y5I 49
Y5I H18 H20 H 0 1 N N N N N N 20.568 27.945 13.347 -5.211 2.871 0.036 H18 Y5I 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y5I C1 C2 SING N N 1
Y5I S1 C2 SING Y N 2
Y5I S1 C3 SING Y N 3
Y5I C2 N1 DOUB Y N 4
Y5I C5 C6 DOUB Y N 5
Y5I C5 C4 SING Y N 6
Y5I C3 C4 SING N N 7
Y5I C3 N2 DOUB Y N 8
Y5I N1 N2 SING Y N 9
Y5I C6 C7 SING Y N 10
Y5I C4 C21 DOUB Y N 11
Y5I C8 O1 SING N N 12
Y5I C8 C9 SING N N 13
Y5I C7 C20 DOUB Y N 14
Y5I C7 O1 SING N N 15
Y5I C21 C20 SING Y N 16
Y5I C20 F2 SING N N 17
Y5I C9 C10 SING N N 18
Y5I C10 O2 SING N N 19
Y5I O2 C11 SING N N 20
Y5I C11 C19 DOUB Y N 21
Y5I C11 C12 SING Y N 22
Y5I C19 C18 SING Y N 23
Y5I C12 C13 DOUB Y N 24
Y5I C18 F1 SING N N 25
Y5I C18 C14 DOUB Y N 26
Y5I C13 C14 SING Y N 27
Y5I C14 C15 SING N N 28
Y5I C15 C16 SING N N 29
Y5I C16 C17 SING N N 30
Y5I C17 O3 DOUB N N 31
Y5I C17 O4 SING N N 32
Y5I C21 H19 SING N N 33
Y5I C16 H16 SING N N 34
Y5I C16 H17 SING N N 35
Y5I C15 H14 SING N N 36
Y5I C15 H15 SING N N 37
Y5I C6 H5 SING N N 38
Y5I C1 H1 SING N N 39
Y5I C1 H2 SING N N 40
Y5I C1 H3 SING N N 41
Y5I C9 H8 SING N N 42
Y5I C9 H9 SING N N 43
Y5I C12 H12 SING N N 44
Y5I C5 H4 SING N N 45
Y5I C8 H6 SING N N 46
Y5I C8 H7 SING N N 47
Y5I C10 H10 SING N N 48
Y5I C10 H11 SING N N 49
Y5I C13 H13 SING N N 50
Y5I O4 H20 SING N N 51
Y5I C19 H18 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y5I InChI InChI 1.06 "InChI=1S/C21H20F2N2O4S/c1-13-24-25-21(30-13)15-4-7-19(18(23)11-15)29-10-2-9-28-16-6-3-14(17(22)12-16)5-8-20(26)27/h3-4,6-7,11-12H,2,5,8-10H2,1H3,(H,26,27)"
Y5I InChIKey InChI 1.06 GKRRPRIZEADZRR-UHFFFAOYSA-N
Y5I SMILES_CANONICAL CACTVS 3.385 "Cc1sc(nn1)c2ccc(OCCCOc3ccc(CCC(O)=O)c(F)c3)c(F)c2"
Y5I SMILES CACTVS 3.385 "Cc1sc(nn1)c2ccc(OCCCOc3ccc(CCC(O)=O)c(F)c3)c(F)c2"
Y5I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnc(s1)c2ccc(c(c2)F)OCCCOc3ccc(c(c3)F)CCC(=O)O"
Y5I SMILES "OpenEye OEToolkits" 2.0.7 "Cc1nnc(s1)c2ccc(c(c2)F)OCCCOc3ccc(c(c3)F)CCC(=O)O"
#
_pdbx_chem_comp_identifier.comp_id Y5I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"3-[2-fluoranyl-4-[3-[2-fluoranyl-4-(5-methyl-1,3,4-thiadiazol-2-yl)phenoxy]propoxy]phenyl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y5I 'Create component' 2023-06-12 PDBE
Y5I 'Initial release' 2024-05-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y5I C21 C 4.299 4.847 1
Y5I C20 C 4.299 3.347 2
Y5I C18 C 12.093 -4.153 3
Y5I C16 C 13.392 -7.903 4
Y5I C15 C 13.392 -6.403 5
Y5I C14 C 12.093 -5.653 6
Y5I C6 C 6.897 3.347 7
Y5I C4 C 5.598 5.597 8
Y5I C2 C 4.848 9.405 9
Y5I O3 O 14.691 -10.153 10
Y5I C1 C 3.966 10.618 11
Y5I C9 C 6.897 -1.153 12
Y5I C11 C 9.495 -4.153 13
Y5I C12 C 9.495 -5.653 14
Y5I N1 N 6.348 9.405 15
Y5I N2 N 6.812 7.978 16
Y5I C3 C 5.598 7.097 17
Y5I C5 C 6.897 4.847 18
Y5I C7 C 5.598 2.597 19
Y5I O1 O 5.598 1.097 20
Y5I C8 C 6.897 0.347 21
Y5I C10 C 8.196 -1.903 22
Y5I O2 O 8.196 -3.403 23
Y5I C13 C 10.794 -6.403 24
Y5I C17 C 14.691 -8.653 25
Y5I O4 O 15.990 -7.903 26
Y5I F1 F 13.392 -3.403 27
Y5I C19 C 10.794 -3.403 28
Y5I F2 F 3.000 2.597 29
Y5I S1 S 4.385 7.978 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y5I C1 C2 SINGLE NONE 1
Y5I S1 C2 SINGLE NONE 2
Y5I S1 C3 SINGLE NONE 3
Y5I C2 N1 DOUBLE NONE 4
Y5I C5 C6 DOUBLE NONE 5
Y5I C5 C4 SINGLE NONE 6
Y5I C3 C4 SINGLE NONE 7
Y5I C3 N2 DOUBLE NONE 8
Y5I N1 N2 SINGLE NONE 9
Y5I C6 C7 SINGLE NONE 10
Y5I C4 C21 DOUBLE NONE 11
Y5I C8 O1 SINGLE NONE 12
Y5I C8 C9 SINGLE NONE 13
Y5I C7 C20 DOUBLE NONE 14
Y5I C7 O1 SINGLE NONE 15
Y5I C21 C20 SINGLE NONE 16
Y5I C20 F2 SINGLE NONE 17
Y5I C9 C10 SINGLE NONE 18
Y5I C10 O2 SINGLE NONE 19
Y5I O2 C11 SINGLE NONE 20
Y5I C11 C19 SINGLE NONE 21
Y5I C11 C12 DOUBLE NONE 22
Y5I C19 C18 DOUBLE NONE 23
Y5I C12 C13 SINGLE NONE 24
Y5I C18 F1 SINGLE NONE 25
Y5I C18 C14 SINGLE NONE 26
Y5I C13 C14 DOUBLE NONE 27
Y5I C14 C15 SINGLE NONE 28
Y5I C15 C16 SINGLE NONE 29
Y5I C16 C17 SINGLE NONE 30
Y5I C17 O3 DOUBLE NONE 31
Y5I C17 O4 SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y5I MurckoScaffold S1 scaffold c1ccc(OCCCOc2ccc(-c3nncs3)cc2)cc1 InChI=1S/C17H16N2O2S/c1-2-5-15(6-3-1)20-11-4-12-21-16-9-7-14(8-10-16)17-19-18-13-22-17/h1-3,5-10,13H,4,11-12H2 NENSIVBXKOSAIO-UHFFFAOYSA-N
Y5I phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
Y5I thiadiazole F2 fragment c1nncs1 InChI=1S/C2H2N2S/c1-3-4-2-5-1/h1-2H MBIZXFATKUQOOA-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y5I C21 S1 1
Y5I C20 S1 1
Y5I C18 S1 1
Y5I C14 S1 1
Y5I C6 S1 1
Y5I C4 S1 1
Y5I C2 S1 1
Y5I C9 S1 1
Y5I C11 S1 1
Y5I C12 S1 1
Y5I N1 S1 1
Y5I N2 S1 1
Y5I C3 S1 1
Y5I C5 S1 1
Y5I C7 S1 1
Y5I O1 S1 1
Y5I C8 S1 1
Y5I C10 S1 1
Y5I O2 S1 1
Y5I C13 S1 1
Y5I C19 S1 1
Y5I S1 S1 1
Y5I C21 F1 1
Y5I C4 F1 1
Y5I C5 F1 1
Y5I C6 F1 1
Y5I C7 F1 1
Y5I C20 F1 1
Y5I C18 F1 2
Y5I C19 F1 2
Y5I C11 F1 2
Y5I C12 F1 2
Y5I C13 F1 2
Y5I C14 F1 2
Y5I C2 F2 1
Y5I N1 F2 1
Y5I N2 F2 1
Y5I C3 F2 1
Y5I S1 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Y5I
_pdbe_chem_comp_rdkit_properties.exactmw 434.111
_pdbe_chem_comp_rdkit_properties.amw 434.464
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 203.848
_pdbe_chem_comp_rdkit_properties.tpsa 81.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.243
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.930
_pdbe_chem_comp_rdkit_properties.chi0v 15.008
_pdbe_chem_comp_rdkit_properties.chi1v 8.225
_pdbe_chem_comp_rdkit_properties.chi2v 3.570
_pdbe_chem_comp_rdkit_properties.chi3v 3.570
_pdbe_chem_comp_rdkit_properties.chi4v 2.216
_pdbe_chem_comp_rdkit_properties.chi0n 34.192
_pdbe_chem_comp_rdkit_properties.chi1n 17.316
_pdbe_chem_comp_rdkit_properties.chi2n 2.816
_pdbe_chem_comp_rdkit_properties.chi3n 2.816
_pdbe_chem_comp_rdkit_properties.chi4n 1.666
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.070
_pdbe_chem_comp_rdkit_properties.kappa1 7.563
_pdbe_chem_comp_rdkit_properties.kappa2 10.108
_pdbe_chem_comp_rdkit_properties.kappa3 5.963
_pdbe_chem_comp_rdkit_properties.Phi 2.548
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y5I C21 -5.836 -1.247 1.304 ETKDGv3 1
Y5I C20 -4.670 -2.141 1.469 ETKDGv3 2
Y5I C18 4.865 1.440 0.610 ETKDGv3 3
Y5I C16 8.017 0.464 -0.012 ETKDGv3 4
Y5I C15 6.982 1.197 -0.868 ETKDGv3 5
Y5I C14 5.587 0.765 -0.498 ETKDGv3 6
Y5I C6 -3.572 -0.925 -0.337 ETKDGv3 7
Y5I C4 -5.827 -0.274 0.374 ETKDGv3 8
Y5I C2 -8.719 2.305 -0.347 ETKDGv3 9
Y5I O3 9.935 1.874 0.210 ETKDGv3 10
Y5I C1 -9.638 3.343 -0.891 ETKDGv3 11
Y5I C9 -0.400 -1.646 0.802 ETKDGv3 12
Y5I C11 2.991 -0.098 0.260 ETKDGv3 13
Y5I C12 3.652 -0.719 -0.737 ETKDGv3 14
Y5I N1 -9.058 1.489 0.599 ETKDGv3 15
Y5I N2 -8.069 0.541 0.920 ETKDGv3 16
Y5I C3 -6.990 0.627 0.203 ETKDGv3 17
Y5I C5 -4.628 -0.116 -0.486 ETKDGv3 18
Y5I C7 -3.584 -1.996 0.696 ETKDGv3 19
Y5I O1 -2.502 -2.869 0.890 ETKDGv3 20
Y5I C8 -1.246 -2.782 0.218 ETKDGv3 21
Y5I C10 0.949 -1.543 0.095 ETKDGv3 22
Y5I O2 1.703 -0.478 0.670 ETKDGv3 23
Y5I C13 5.006 -0.274 -1.124 ETKDGv3 24
Y5I C17 9.401 0.896 -0.379 ETKDGv3 25
Y5I O4 10.082 0.244 -1.402 ETKDGv3 26
Y5I F1 5.442 2.472 1.275 ETKDGv3 27
Y5I C19 3.639 1.032 0.962 ETKDGv3 28
Y5I F2 -4.708 -3.112 2.415 ETKDGv3 29
Y5I S1 -7.098 1.952 -0.993 ETKDGv3 30
Y5I H19 -6.693 -1.395 1.950 ETKDGv3 31
Y5I H16 7.837 0.676 1.065 ETKDGv3 32
Y5I H17 7.927 -0.633 -0.168 ETKDGv3 33
Y5I H14 7.083 2.295 -0.720 ETKDGv3 34
Y5I H15 7.173 0.992 -1.945 ETKDGv3 35
Y5I H5 -2.716 -0.785 -0.983 ETKDGv3 36
Y5I H1 -10.284 3.745 -0.082 ETKDGv3 37
Y5I H2 -10.276 2.895 -1.681 ETKDGv3 38
Y5I H3 -9.049 4.176 -1.327 ETKDGv3 39
Y5I H8 -0.233 -1.835 1.885 ETKDGv3 40
Y5I H9 -0.937 -0.680 0.699 ETKDGv3 41
Y5I H12 3.214 -1.550 -1.271 ETKDGv3 42
Y5I H4 -4.594 0.655 -1.245 ETKDGv3 43
Y5I H6 -0.708 -3.742 0.371 ETKDGv3 44
Y5I H7 -1.396 -2.657 -0.875 ETKDGv3 45
Y5I H10 0.785 -1.339 -0.986 ETKDGv3 46
Y5I H11 1.505 -2.498 0.214 ETKDGv3 47
Y5I H13 5.523 -0.799 -1.918 ETKDGv3 48
Y5I H20 11.014 0.534 -1.674 ETKDGv3 49
Y5I H18 3.117 1.528 1.769 ETKDGv3 50
#