data_YAV
#
_chem_comp.id YAV
_chem_comp.name
"2-[2-[2-[3-[2-[2-[2-[[3-[2-[3-(2-hydroxy-2-oxoethyl)-5-methyl-1-benzofuran-2-yl]ethynyl]phenyl]carbonylamino]ethoxy]ethoxy]ethylcarbamoyl]phenyl]ethynyl]-5-methyl-1-benzofuran-3-yl]ethanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C46 H40 N2 O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-15
_chem_comp.pdbx_modified_date 2022-02-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 780.817
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YAV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LQP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YAV C10 C1 C 0 1 N N N N N N 0.708 16.473 -5.841 -11.859 -0.804 1.557 C10 YAV 1
YAV C15 C2 C 0 1 Y N N N N N 2.752 14.066 -4.622 -13.167 -3.774 0.731 C15 YAV 2
YAV C17 C3 C 0 1 N N N N N N 3.656 12.232 -3.125 -14.759 -5.685 0.692 C17 YAV 3
YAV C20 C4 C 0 1 Y N N N N N 3.948 14.799 -6.588 -11.130 -3.798 -0.592 C20 YAV 4
YAV C22 C5 C 0 1 Y N N N N N 0.542 20.285 -9.980 -7.757 2.325 0.676 C22 YAV 5
YAV C24 C6 C 0 1 Y N N N N N 0.880 21.102 -12.215 -5.709 3.289 -0.106 C24 YAV 6
YAV C26 C7 C 0 1 N N N N N N 3.222 20.906 -15.985 -2.152 3.023 -2.539 C26 YAV 7
YAV C02 C8 C 0 1 N N N N N N 2.573 19.983 -13.752 -4.244 2.080 -1.719 C02 YAV 8
YAV C03 C9 C 0 1 Y N N N N N 1.832 20.116 -12.427 -5.466 2.158 -0.890 C03 YAV 9
YAV C04 C10 C 0 1 Y N N N N N 2.135 19.222 -11.426 -6.380 1.107 -0.894 C04 YAV 10
YAV C05 C11 C 0 1 Y N N N N N 1.495 19.307 -10.210 -7.530 1.189 -0.108 C05 YAV 11
YAV C06 C12 C 0 1 N N N N N N 1.891 18.285 -9.155 -8.475 0.113 -0.105 C06 YAV 12
YAV C07 C13 C 0 1 N N N N N N 2.246 17.451 -8.400 -9.250 -0.769 -0.102 C07 YAV 13
YAV C08 C14 C 0 1 Y N N N N N 2.726 16.356 -7.460 -10.195 -1.845 -0.098 C08 YAV 14
YAV C09 C15 C 0 1 Y N N N N N 2.044 15.946 -6.325 -11.347 -1.873 0.626 C09 YAV 15
YAV C11 C16 C 0 1 N N N N N N -0.299 15.384 -6.144 -12.724 0.160 0.787 C11 YAV 16
YAV C14 C17 C 0 1 Y N N N N N 2.853 14.894 -5.745 -11.986 -3.153 0.320 C14 YAV 17
YAV C16 C18 C 0 1 Y N N N N N 3.758 13.143 -4.352 -13.488 -5.010 0.244 C16 YAV 18
YAV C18 C19 C 0 1 Y N N N N N 4.862 13.046 -5.200 -12.650 -5.648 -0.659 C18 YAV 19
YAV C19 C20 C 0 1 Y N N N N N 4.959 13.870 -6.314 -11.482 -5.049 -1.081 C19 YAV 20
YAV C23 C21 C 0 1 Y N N N N N 0.236 21.187 -10.988 -6.849 3.364 0.669 C23 YAV 21
YAV C27 C22 C 0 1 N N N N N N 2.696 21.928 -16.990 -1.330 4.300 -2.356 C27 YAV 22
YAV C29 C23 C 0 1 N N N N N N 4.656 23.107 -17.487 -0.084 5.543 -0.729 C29 YAV 23
YAV C30 C24 C 0 1 N N N N N N 5.402 23.625 -18.710 0.354 5.524 0.737 C30 YAV 24
YAV C32 C25 C 0 1 N N N N N N 4.292 25.485 -19.527 1.701 4.308 2.302 C32 YAV 25
YAV C33 C26 C 0 1 N N N N N N 3.681 26.063 -20.806 2.626 3.094 2.422 C33 YAV 26
YAV C35 C27 C 0 1 N N N N N N 3.195 25.511 -23.202 4.786 2.369 1.560 C35 YAV 27
YAV C36 C28 C 0 1 Y N N N N N 2.849 24.532 -24.325 5.996 2.589 0.739 C36 YAV 28
YAV C37 C29 C 0 1 Y N N N N N 1.521 24.185 -24.520 6.144 3.773 0.013 C37 YAV 29
YAV C38 C30 C 0 1 Y N N N N N 1.169 23.306 -25.529 7.273 3.982 -0.755 C38 YAV 30
YAV C39 C31 C 0 1 Y N N N N N 2.148 22.776 -26.351 8.264 3.023 -0.811 C39 YAV 31
YAV C40 C32 C 0 1 Y N N N N N 3.474 23.122 -26.161 8.130 1.832 -0.089 C40 YAV 32
YAV C41 C33 C 0 1 N N N N N N 4.528 22.510 -27.084 9.159 0.837 -0.147 C41 YAV 33
YAV C42 C34 C 0 1 N N N N N N 5.305 22.026 -27.841 10.002 0.022 -0.195 C42 YAV 34
YAV C43 C35 C 0 1 Y N N N N N 6.301 21.523 -28.886 11.031 -0.972 -0.254 C43 YAV 35
YAV C44 C36 C 0 1 Y N N N N N 6.851 22.356 -29.858 11.008 -2.163 0.404 C44 YAV 36
YAV C45 C37 C 0 1 N N N N N N 6.567 23.843 -30.028 9.919 -2.675 1.312 C45 YAV 37
YAV C46 C38 C 0 1 N N N N N N 6.267 24.224 -31.472 8.911 -3.448 0.502 C46 YAV 38
YAV C49 C39 C 0 1 Y N N N N N 7.733 21.513 -30.638 12.253 -2.845 0.051 C49 YAV 39
YAV C50 C40 C 0 1 Y N N N N N 8.573 21.715 -31.737 12.820 -4.074 0.394 C50 YAV 40
YAV C51 C41 C 0 1 Y N N N N N 9.306 20.653 -32.255 14.039 -4.424 -0.116 C51 YAV 41
YAV C52 C42 C 0 1 N N N N N N 10.226 20.873 -33.457 14.653 -5.750 0.252 C52 YAV 42
YAV C53 C43 C 0 1 Y N N N N N 9.201 19.388 -31.675 14.714 -3.566 -0.972 C53 YAV 43
YAV C54 C44 C 0 1 Y N N N N N 8.366 19.185 -30.584 14.171 -2.348 -1.323 C54 YAV 44
YAV C55 C45 C 0 1 Y N N N N N 7.626 20.255 -30.059 12.934 -1.971 -0.817 C55 YAV 45
YAV C57 C46 C 0 1 Y N N N N N 3.830 24.004 -25.152 6.994 1.618 0.692 C57 YAV 46
YAV N25 N1 N 0 1 N N N N N N 2.507 21.045 -14.732 -3.363 3.100 -1.718 N25 YAV 47
YAV N34 N2 N 0 1 N N N N N N 3.373 25.065 -21.822 3.824 3.312 1.608 N34 YAV 48
YAV O01 O1 O 0 1 N N N N N N 3.211 19.011 -13.972 -4.034 1.097 -2.401 O01 YAV 49
YAV O12 O2 O 0 1 N N N N N N -0.262 14.335 -5.455 -13.293 1.201 1.415 O12 YAV 50
YAV O13 O3 O 0 1 N N N N N N -1.140 15.517 -7.069 -12.907 -0.005 -0.396 O13 YAV 51
YAV O21 O4 O 0 1 Y N N N N N 3.826 15.676 -7.576 -10.079 -2.983 -0.813 O21 YAV 52
YAV O28 O5 O 0 1 N N N N N N 3.717 22.162 -17.919 -0.867 4.381 -1.007 O28 YAV 53
YAV O31 O6 O 0 1 N N N N N N 4.475 24.105 -19.644 1.231 4.417 0.957 O31 YAV 54
YAV O47 O7 O 0 1 N N N N N N 6.814 25.239 -31.978 7.847 -4.001 1.105 O47 YAV 55
YAV O48 O8 O 0 1 N N N N N N 5.474 23.520 -32.148 9.061 -3.570 -0.691 O48 YAV 56
YAV O56 O9 O 0 1 Y N N N N N 6.774 20.319 -29.042 12.167 -0.873 -0.974 O56 YAV 57
YAV O58 O10 O 0 1 N N N N N N 3.306 26.662 -23.456 4.659 1.338 2.191 O58 YAV 58
YAV H1 H1 H 0 1 N N N N N N 0.744 16.672 -4.760 -12.446 -1.265 2.351 H1 YAV 59
YAV H2 H2 H 0 1 N N N N N N 0.445 17.398 -6.375 -11.016 -0.267 1.992 H2 YAV 60
YAV H3 H3 H 0 1 N N N N N N 1.897 14.143 -3.967 -13.822 -3.281 1.434 H3 YAV 61
YAV H4 H4 H 0 1 N N N N N N 4.130 12.723 -2.263 -15.572 -5.409 0.020 H4 YAV 62
YAV H5 H5 H 0 1 N N N N N N 2.597 12.038 -2.900 -14.623 -6.766 0.673 H5 YAV 63
YAV H6 H6 H 0 1 N N N N N N 4.167 11.280 -3.332 -15.002 -5.367 1.706 H6 YAV 64
YAV H7 H7 H 0 1 N N N N N N 0.042 20.345 -9.025 -8.647 2.391 1.285 H7 YAV 65
YAV H8 H8 H 0 1 N N N N N N 0.640 21.802 -13.002 -5.003 4.106 -0.106 H8 YAV 66
YAV H9 H9 H 0 1 N N N N N N 3.072 19.891 -16.382 -2.430 2.916 -3.587 H9 YAV 67
YAV H10 H10 H 0 1 N N N N N N 4.295 21.078 -15.815 -1.558 2.162 -2.231 H10 YAV 68
YAV H11 H11 H 0 1 N N N N N N 2.875 18.454 -11.594 -6.199 0.233 -1.502 H11 YAV 69
YAV H12 H12 H 0 1 N N N N N N 5.642 12.329 -4.990 -12.916 -6.625 -1.036 H12 YAV 70
YAV H13 H13 H 0 1 N N N N N N 5.814 13.794 -6.969 -10.836 -5.558 -1.782 H13 YAV 71
YAV H14 H14 H 0 1 N N N N N N -0.503 21.956 -10.818 -7.031 4.241 1.274 H14 YAV 72
YAV H15 H15 H 0 1 N N N N N N 2.435 22.864 -16.474 -0.475 4.282 -3.033 H15 YAV 73
YAV H16 H16 H 0 1 N N N N N N 1.806 21.530 -17.501 -1.951 5.167 -2.580 H16 YAV 74
YAV H17 H17 H 0 1 N N N N N N 5.365 22.637 -16.789 -0.680 6.436 -0.918 H17 YAV 75
YAV H18 H18 H 0 1 N N N N N N 4.143 23.939 -16.983 0.796 5.551 -1.372 H18 YAV 76
YAV H19 H19 H 0 1 N N N N N N 5.987 22.808 -19.158 0.875 6.453 0.972 H19 YAV 77
YAV H20 H20 H 0 1 N N N N N N 6.079 24.439 -18.411 -0.522 5.427 1.377 H20 YAV 78
YAV H21 H21 H 0 1 N N N N N N 5.265 25.964 -19.344 0.852 4.185 2.975 H21 YAV 79
YAV H22 H22 H 0 1 N N N N N N 3.619 25.689 -18.682 2.250 5.210 2.570 H22 YAV 80
YAV H23 H23 H 0 1 N N N N N N 4.393 26.783 -21.234 2.914 2.958 3.464 H23 YAV 81
YAV H24 H24 H 0 1 N N N N N N 2.749 26.583 -20.539 2.104 2.204 2.070 H24 YAV 82
YAV H25 H25 H 0 1 N N N N N N 0.757 24.603 -23.881 5.373 4.529 0.052 H25 YAV 83
YAV H26 H26 H 0 1 N N N N N N 0.134 23.035 -25.675 7.381 4.899 -1.314 H26 YAV 84
YAV H27 H27 H 0 1 N N N N N N 1.877 22.092 -27.141 9.142 3.190 -1.416 H27 YAV 85
YAV H28 H28 H 0 1 N N N N N N 7.447 24.410 -29.690 10.355 -3.328 2.069 H28 YAV 86
YAV H29 H29 H 0 1 N N N N N N 5.699 24.109 -29.407 9.426 -1.834 1.799 H29 YAV 87
YAV H30 H30 H 0 1 N N N N N N 8.653 22.695 -32.183 12.298 -4.745 1.061 H30 YAV 88
YAV H31 H31 H 0 1 N N N N N N 11.229 21.154 -33.105 14.337 -6.508 -0.464 H31 YAV 89
YAV H32 H32 H 0 1 N N N N N N 10.290 19.945 -34.044 15.739 -5.665 0.236 H32 YAV 90
YAV H33 H33 H 0 1 N N N N N N 9.820 21.678 -34.087 14.325 -6.036 1.252 H33 YAV 91
YAV H34 H34 H 0 1 N N N N N N 9.772 18.563 -32.076 15.677 -3.855 -1.368 H34 YAV 92
YAV H35 H35 H 0 1 N N N N N N 8.286 18.204 -30.140 14.705 -1.689 -1.990 H35 YAV 93
YAV H36 H36 H 0 1 N N N N N N 4.865 24.278 -25.011 6.885 0.701 1.252 H36 YAV 94
YAV H37 H37 H 0 1 N N N N N N 1.972 21.869 -14.546 -3.530 3.885 -1.173 H37 YAV 95
YAV H38 H38 H 0 1 N N N N N N 3.286 24.098 -21.581 3.926 4.135 1.105 H38 YAV 96
YAV H39 H39 H 0 1 N N N N N N -0.934 13.735 -5.755 -13.840 1.791 0.879 H39 YAV 97
YAV H40 H40 H 0 1 N N N N N N 6.526 25.339 -32.878 7.227 -4.487 0.543 H40 YAV 98
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YAV C52 C51 SING N N 1
YAV C51 C50 DOUB Y N 2
YAV C51 C53 SING Y N 3
YAV O48 C46 DOUB N N 4
YAV O47 C46 SING N N 5
YAV C50 C49 SING Y N 6
YAV C53 C54 DOUB Y N 7
YAV C46 C45 SING N N 8
YAV C49 C55 DOUB Y N 9
YAV C49 C44 SING Y N 10
YAV C54 C55 SING Y N 11
YAV C55 O56 SING Y N 12
YAV C45 C44 SING N N 13
YAV C44 C43 DOUB Y N 14
YAV O56 C43 SING Y N 15
YAV C43 C42 SING N N 16
YAV C42 C41 TRIP N N 17
YAV C41 C40 SING N N 18
YAV C39 C40 DOUB Y N 19
YAV C39 C38 SING Y N 20
YAV C40 C57 SING Y N 21
YAV C38 C37 DOUB Y N 22
YAV C57 C36 DOUB Y N 23
YAV C37 C36 SING Y N 24
YAV C36 C35 SING N N 25
YAV O58 C35 DOUB N N 26
YAV C35 N34 SING N N 27
YAV N34 C33 SING N N 28
YAV C33 C32 SING N N 29
YAV O31 C32 SING N N 30
YAV O31 C30 SING N N 31
YAV C30 C29 SING N N 32
YAV O28 C29 SING N N 33
YAV O28 C27 SING N N 34
YAV C27 C26 SING N N 35
YAV C26 N25 SING N N 36
YAV N25 C02 SING N N 37
YAV O01 C02 DOUB N N 38
YAV C02 C03 SING N N 39
YAV C03 C24 DOUB Y N 40
YAV C03 C04 SING Y N 41
YAV C24 C23 SING Y N 42
YAV C04 C05 DOUB Y N 43
YAV C23 C22 DOUB Y N 44
YAV C05 C22 SING Y N 45
YAV C05 C06 SING N N 46
YAV C06 C07 TRIP N N 47
YAV C07 C08 SING N N 48
YAV O21 C08 SING Y N 49
YAV O21 C20 SING Y N 50
YAV C08 C09 DOUB Y N 51
YAV O13 C11 DOUB N N 52
YAV C20 C19 DOUB Y N 53
YAV C20 C14 SING Y N 54
YAV C09 C10 SING N N 55
YAV C09 C14 SING Y N 56
YAV C19 C18 SING Y N 57
YAV C11 C10 SING N N 58
YAV C11 O12 SING N N 59
YAV C14 C15 DOUB Y N 60
YAV C18 C16 DOUB Y N 61
YAV C15 C16 SING Y N 62
YAV C16 C17 SING N N 63
YAV C10 H1 SING N N 64
YAV C10 H2 SING N N 65
YAV C15 H3 SING N N 66
YAV C17 H4 SING N N 67
YAV C17 H5 SING N N 68
YAV C17 H6 SING N N 69
YAV C22 H7 SING N N 70
YAV C24 H8 SING N N 71
YAV C26 H9 SING N N 72
YAV C26 H10 SING N N 73
YAV C04 H11 SING N N 74
YAV C18 H12 SING N N 75
YAV C19 H13 SING N N 76
YAV C23 H14 SING N N 77
YAV C27 H15 SING N N 78
YAV C27 H16 SING N N 79
YAV C29 H17 SING N N 80
YAV C29 H18 SING N N 81
YAV C30 H19 SING N N 82
YAV C30 H20 SING N N 83
YAV C32 H21 SING N N 84
YAV C32 H22 SING N N 85
YAV C33 H23 SING N N 86
YAV C33 H24 SING N N 87
YAV C37 H25 SING N N 88
YAV C38 H26 SING N N 89
YAV C39 H27 SING N N 90
YAV C45 H28 SING N N 91
YAV C45 H29 SING N N 92
YAV C50 H30 SING N N 93
YAV C52 H31 SING N N 94
YAV C52 H32 SING N N 95
YAV C52 H33 SING N N 96
YAV C53 H34 SING N N 97
YAV C54 H35 SING N N 98
YAV C57 H36 SING N N 99
YAV N25 H37 SING N N 100
YAV N34 H38 SING N N 101
YAV O12 H39 SING N N 102
YAV O47 H40 SING N N 103
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YAV InChI InChI 1.03 InChI=1S/C46H40N2O10/c1-29-9-13-39-35(23-29)37(27-43(49)50)41(57-39)15-11-31-5-3-7-33(25-31)45(53)47-17-19-55-21-22-56-20-18-48-46(54)34-8-4-6-32(26-34)12-16-42-38(28-44(51)52)36-24-30(2)10-14-40(36)58-42/h3-10,13-14,23-26H,17-22,27-28H2,1-2H3,(H,47,53)(H,48,54)(H,49,50)(H,51,52)
YAV InChIKey InChI 1.03 CNJSVQQGSQPFLB-UHFFFAOYSA-N
YAV SMILES_CANONICAL CACTVS 3.385 "Cc1ccc2oc(C#Cc3cccc(c3)C(=O)NCCOCCOCCNC(=O)c4cccc(c4)C#Cc5oc6ccc(C)cc6c5CC(O)=O)c(CC(O)=O)c2c1"
YAV SMILES CACTVS 3.385 "Cc1ccc2oc(C#Cc3cccc(c3)C(=O)NCCOCCOCCNC(=O)c4cccc(c4)C#Cc5oc6ccc(C)cc6c5CC(O)=O)c(CC(O)=O)c2c1"
YAV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)c(c(o2)C#Cc3cccc(c3)C(=O)NCCOCCOCCNC(=O)c4cccc(c4)C#Cc5c(c6cc(ccc6o5)C)CC(=O)O)CC(=O)O"
YAV SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)c(c(o2)C#Cc3cccc(c3)C(=O)NCCOCCOCCNC(=O)c4cccc(c4)C#Cc5c(c6cc(ccc6o5)C)CC(=O)O)CC(=O)O"
#
_pdbx_chem_comp_identifier.comp_id YAV
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"2-[2-[2-[3-[2-[2-[2-[[3-[2-[3-(2-hydroxy-2-oxoethyl)-5-methyl-1-benzofuran-2-yl]ethynyl]phenyl]carbonylamino]ethoxy]ethoxy]ethylcarbamoyl]phenyl]ethynyl]-5-methyl-1-benzofuran-3-yl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YAV 'Create component' 2021-02-15 RCSB
YAV 'Initial release' 2022-02-23 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YAV C10 C 37.351 6.295 1
YAV C15 C 40.536 5.162 2
YAV C17 C 43.134 5.162 3
YAV C20 C 39.236 2.912 4
YAV C22 C 31.692 4.961 5
YAV C24 C 29.442 3.662 6
YAV C26 C 27.192 -0.235 7
YAV C02 C 29.442 1.064 8
YAV C03 C 30.192 2.363 9
YAV C04 C 31.692 2.363 10
YAV C05 C 32.442 3.662 11
YAV C06 C 33.942 3.662 12
YAV C07 C 35.442 3.662 13
YAV C08 C 36.942 3.662 14
YAV C09 C 37.817 4.869 15
YAV C11 C 38.353 7.411 16
YAV C14 C 39.236 4.412 17
YAV C16 C 41.835 4.412 18
YAV C18 C 41.835 2.912 19
YAV C19 C 40.536 2.162 20
YAV C23 C 30.192 4.961 21
YAV C27 C 25.692 -0.235 22
YAV C29 C 23.442 -1.534 23
YAV C30 C 22.692 -2.833 24
YAV C32 C 20.442 -4.132 25
YAV C33 C 18.942 -4.132 26
YAV C35 C 16.692 -5.431 27
YAV C36 C 15.942 -6.730 28
YAV C37 C 16.692 -8.029 29
YAV C38 C 15.942 -9.328 30
YAV C39 C 14.442 -9.328 31
YAV C40 C 13.692 -8.029 32
YAV C41 C 12.192 -8.029 33
YAV C42 C 10.692 -8.029 34
YAV C43 C 9.192 -8.029 35
YAV C44 C 8.316 -6.822 36
YAV C45 C 8.783 -5.396 37
YAV C46 C 10.250 -5.087 38
YAV C49 C 6.897 -7.279 39
YAV C50 C 5.598 -6.529 40
YAV C51 C 4.299 -7.279 41
YAV C52 C 3.000 -6.529 42
YAV C53 C 4.299 -8.779 43
YAV C54 C 5.598 -9.529 44
YAV C55 C 6.897 -8.779 45
YAV C57 C 14.442 -6.730 46
YAV N25 N 27.942 1.064 47
YAV N34 N 18.192 -5.431 48
YAV O01 O 30.192 -0.235 49
YAV O12 O 39.821 7.102 50
YAV O13 O 37.887 8.837 51
YAV O21 O 37.817 2.455 52
YAV O28 O 24.942 -1.534 53
YAV O31 O 21.192 -2.833 54
YAV O47 O 11.252 -6.204 55
YAV O48 O 10.716 -3.661 56
YAV O56 O 8.316 -9.236 57
YAV O58 O 15.942 -4.132 58
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YAV C52 C51 SINGLE NONE 1
YAV C51 C50 SINGLE NONE 2
YAV C51 C53 DOUBLE NONE 3
YAV O48 C46 DOUBLE NONE 4
YAV O47 C46 SINGLE NONE 5
YAV C50 C49 DOUBLE NONE 6
YAV C53 C54 SINGLE NONE 7
YAV C46 C45 SINGLE NONE 8
YAV C49 C55 SINGLE NONE 9
YAV C49 C44 SINGLE NONE 10
YAV C54 C55 DOUBLE NONE 11
YAV C55 O56 SINGLE NONE 12
YAV C45 C44 SINGLE NONE 13
YAV C44 C43 DOUBLE NONE 14
YAV O56 C43 SINGLE NONE 15
YAV C43 C42 SINGLE NONE 16
YAV C42 C41 TRIPLE NONE 17
YAV C41 C40 SINGLE NONE 18
YAV C39 C40 DOUBLE NONE 19
YAV C39 C38 SINGLE NONE 20
YAV C40 C57 SINGLE NONE 21
YAV C38 C37 DOUBLE NONE 22
YAV C57 C36 DOUBLE NONE 23
YAV C37 C36 SINGLE NONE 24
YAV C36 C35 SINGLE NONE 25
YAV O58 C35 DOUBLE NONE 26
YAV C35 N34 SINGLE NONE 27
YAV N34 C33 SINGLE NONE 28
YAV C33 C32 SINGLE NONE 29
YAV O31 C32 SINGLE NONE 30
YAV O31 C30 SINGLE NONE 31
YAV C30 C29 SINGLE NONE 32
YAV O28 C29 SINGLE NONE 33
YAV O28 C27 SINGLE NONE 34
YAV C27 C26 SINGLE NONE 35
YAV C26 N25 SINGLE NONE 36
YAV N25 C02 SINGLE NONE 37
YAV O01 C02 DOUBLE NONE 38
YAV C02 C03 SINGLE NONE 39
YAV C03 C24 DOUBLE NONE 40
YAV C03 C04 SINGLE NONE 41
YAV C24 C23 SINGLE NONE 42
YAV C04 C05 DOUBLE NONE 43
YAV C23 C22 DOUBLE NONE 44
YAV C05 C22 SINGLE NONE 45
YAV C05 C06 SINGLE NONE 46
YAV C06 C07 TRIPLE NONE 47
YAV C07 C08 SINGLE NONE 48
YAV O21 C08 SINGLE NONE 49
YAV O21 C20 SINGLE NONE 50
YAV C08 C09 DOUBLE NONE 51
YAV O13 C11 DOUBLE NONE 52
YAV C20 C19 DOUBLE NONE 53
YAV C20 C14 SINGLE NONE 54
YAV C09 C10 SINGLE NONE 55
YAV C09 C14 SINGLE NONE 56
YAV C19 C18 SINGLE NONE 57
YAV C11 C10 SINGLE NONE 58
YAV C11 O12 SINGLE NONE 59
YAV C14 C15 DOUBLE NONE 60
YAV C18 C16 DOUBLE NONE 61
YAV C15 C16 SINGLE NONE 62
YAV C16 C17 SINGLE NONE 63
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YAV MurckoScaffold S1 scaffold 'O=C(NCCOCCOCCNC(=O)c1cccc(C#Cc2cc3ccccc3o2)c1)c1cccc(C#Cc2cc3ccccc3o2)c1' InChI=1S/C40H32N2O6/c43-39(33-11-5-7-29(25-33)15-17-35-27-31-9-1-3-13-37(31)47-35)41-19-21-45-23-24-46-22-20-42-40(44)34-12-6-8-30(26-34)16-18-36-28-32-10-2-4-14-38(32)48-36/h1-14,25-28H,19-24H2,(H,41,43)(H,42,44) KPPRLPXCVMTBTG-UHFFFAOYSA-N
YAV amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
YAV furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
YAV phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YAV C15 S1 1
YAV C20 S1 1
YAV C22 S1 1
YAV C24 S1 1
YAV C26 S1 1
YAV C02 S1 1
YAV C03 S1 1
YAV C04 S1 1
YAV C05 S1 1
YAV C06 S1 1
YAV C07 S1 1
YAV C08 S1 1
YAV C09 S1 1
YAV C14 S1 1
YAV C16 S1 1
YAV C18 S1 1
YAV C19 S1 1
YAV C23 S1 1
YAV C27 S1 1
YAV C29 S1 1
YAV C30 S1 1
YAV C32 S1 1
YAV C33 S1 1
YAV C35 S1 1
YAV C36 S1 1
YAV C37 S1 1
YAV C38 S1 1
YAV C39 S1 1
YAV C40 S1 1
YAV C41 S1 1
YAV C42 S1 1
YAV C43 S1 1
YAV C44 S1 1
YAV C49 S1 1
YAV C50 S1 1
YAV C51 S1 1
YAV C53 S1 1
YAV C54 S1 1
YAV C55 S1 1
YAV C57 S1 1
YAV N25 S1 1
YAV N34 S1 1
YAV O01 S1 1
YAV O21 S1 1
YAV O28 S1 1
YAV O31 S1 1
YAV O56 S1 1
YAV O58 S1 1
YAV N25 F1 1
YAV C02 F1 1
YAV O01 F1 1
YAV C03 F1 1
YAV N34 F1 2
YAV C35 F1 2
YAV O58 F1 2
YAV C36 F1 2
YAV C20 F2 1
YAV C14 F2 1
YAV C09 F2 1
YAV C08 F2 1
YAV O21 F2 1
YAV C43 F2 2
YAV C44 F2 2
YAV C49 F2 2
YAV C55 F2 2
YAV O56 F2 2
YAV C15 F3 1
YAV C14 F3 1
YAV C20 F3 1
YAV C19 F3 1
YAV C18 F3 1
YAV C16 F3 1
YAV C22 F3 2
YAV C23 F3 2
YAV C24 F3 2
YAV C03 F3 2
YAV C04 F3 2
YAV C05 F3 2
YAV C36 F3 3
YAV C57 F3 3
YAV C40 F3 3
YAV C39 F3 3
YAV C38 F3 3
YAV C37 F3 3
YAV C49 F3 4
YAV C50 F3 4
YAV C51 F3 4
YAV C53 F3 4
YAV C54 F3 4
YAV C55 F3 4
#
_pdbe_chem_comp_rdkit_properties.comp_id YAV
_pdbe_chem_comp_rdkit_properties.exactmw 780.268
_pdbe_chem_comp_rdkit_properties.amw 780.830
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 58
_pdbe_chem_comp_rdkit_properties.NumAtoms 98
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.217
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 390.172
_pdbe_chem_comp_rdkit_properties.tpsa 177.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.639
_pdbe_chem_comp_rdkit_properties.CrippenMR 208.658
_pdbe_chem_comp_rdkit_properties.chi0v 27.977
_pdbe_chem_comp_rdkit_properties.chi1v 15.002
_pdbe_chem_comp_rdkit_properties.chi2v 6.304
_pdbe_chem_comp_rdkit_properties.chi3v 6.304
_pdbe_chem_comp_rdkit_properties.chi4v 4.109
_pdbe_chem_comp_rdkit_properties.chi0n 67.977
_pdbe_chem_comp_rdkit_properties.chi1n 34.713
_pdbe_chem_comp_rdkit_properties.chi2n 6.304
_pdbe_chem_comp_rdkit_properties.chi3n 6.304
_pdbe_chem_comp_rdkit_properties.chi4n 4.109
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -7.120
_pdbe_chem_comp_rdkit_properties.kappa1 13.770
_pdbe_chem_comp_rdkit_properties.kappa2 19.154
_pdbe_chem_comp_rdkit_properties.kappa3 10.796
_pdbe_chem_comp_rdkit_properties.Phi 4.547
#
_pdbe_chem_comp_external_mappings.comp_id YAV
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id YAV
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YAV C10 12.795 -0.537 0.683 ETKDGv3 1
YAV C15 13.113 2.127 2.533 ETKDGv3 2
YAV C17 14.170 3.928 4.065 ETKDGv3 3
YAV C20 10.721 2.249 2.135 ETKDGv3 4
YAV C22 9.270 -3.746 -1.540 ETKDGv3 5
YAV C24 7.371 -4.452 -2.900 ETKDGv3 6
YAV C26 3.262 -1.719 -3.490 ETKDGv3 7
YAV C02 5.413 -3.037 -3.346 ETKDGv3 8
YAV C03 6.738 -3.276 -2.724 ETKDGv3 9
YAV C04 7.402 -2.216 -1.917 ETKDGv3 10
YAV C05 8.600 -2.442 -1.354 ETKDGv3 11
YAV C06 9.246 -1.415 -0.580 ETKDGv3 12
YAV C07 9.793 -0.560 0.070 ETKDGv3 13
YAV C08 10.456 0.452 0.847 ETKDGv3 14
YAV C09 11.776 0.483 1.101 ETKDGv3 15
YAV C11 12.865 -1.634 1.694 ETKDGv3 16
YAV C14 12.011 1.639 1.959 ETKDGv3 17
YAV C16 12.972 3.359 3.366 ETKDGv3 18
YAV C18 11.749 3.924 3.535 ETKDGv3 19
YAV C19 10.548 3.342 2.877 ETKDGv3 20
YAV C23 8.689 -4.697 -2.278 ETKDGv3 21
YAV C27 2.454 -0.686 -2.698 ETKDGv3 22
YAV C29 0.837 -1.824 -1.446 ETKDGv3 23
YAV C30 -0.254 -0.839 -1.022 ETKDGv3 24
YAV C32 -1.906 -1.901 0.224 ETKDGv3 25
YAV C33 -3.204 -2.698 0.131 ETKDGv3 26
YAV C35 -4.643 -1.773 -1.751 ETKDGv3 27
YAV C36 -5.788 -0.952 -2.211 ETKDGv3 28
YAV C37 -5.819 -0.462 -3.615 ETKDGv3 29
YAV C38 -6.849 0.271 -4.055 ETKDGv3 30
YAV C39 -7.968 0.596 -3.150 ETKDGv3 31
YAV C40 -7.957 0.153 -1.885 ETKDGv3 32
YAV C41 -9.048 0.462 -0.999 ETKDGv3 33
YAV C42 -9.963 0.726 -0.262 ETKDGv3 34
YAV C43 -11.060 1.048 0.611 ETKDGv3 35
YAV C44 -12.209 1.628 0.221 ETKDGv3 36
YAV C45 -12.556 2.101 -1.162 ETKDGv3 37
YAV C46 -12.136 3.527 -1.339 ETKDGv3 38
YAV C49 -13.017 1.809 1.422 ETKDGv3 39
YAV C50 -14.221 2.346 1.625 ETKDGv3 40
YAV C51 -14.743 2.366 3.025 ETKDGv3 41
YAV C52 -16.108 2.918 3.305 ETKDGv3 42
YAV C53 -14.002 1.830 4.029 ETKDGv3 43
YAV C54 -12.660 1.250 3.755 ETKDGv3 44
YAV C55 -12.230 1.263 2.494 ETKDGv3 45
YAV C57 -6.821 -0.661 -1.396 ETKDGv3 46
YAV N25 4.502 -2.072 -2.796 ETKDGv3 47
YAV N34 -4.292 -1.852 -0.358 ETKDGv3 48
YAV O01 5.075 -3.700 -4.365 ETKDGv3 49
YAV O12 13.663 -1.485 2.824 ETKDGv3 50
YAV O13 12.172 -2.676 1.545 ETKDGv3 51
YAV O21 9.770 1.517 1.445 ETKDGv3 52
YAV O28 2.104 -1.193 -1.422 ETKDGv3 53
YAV O31 -1.521 -1.469 -1.065 ETKDGv3 54
YAV O47 -10.875 3.840 -1.839 ETKDGv3 55
YAV O48 -12.914 4.457 -0.997 ETKDGv3 56
YAV O56 -11.030 0.794 1.988 ETKDGv3 57
YAV O58 -3.953 -2.396 -2.605 ETKDGv3 58
YAV H1 12.536 -0.954 -0.314 ETKDGv3 59
YAV H2 13.791 -0.055 0.592 ETKDGv3 60
YAV H3 14.073 1.644 2.399 ETKDGv3 61
YAV H4 14.171 3.599 5.125 ETKDGv3 62
YAV H5 14.151 5.038 4.026 ETKDGv3 63
YAV H6 15.107 3.581 3.580 ETKDGv3 64
YAV H7 10.236 -3.931 -1.086 ETKDGv3 65
YAV H8 6.921 -5.246 -3.484 ETKDGv3 66
YAV H9 2.650 -2.634 -3.644 ETKDGv3 67
YAV H10 3.510 -1.293 -4.486 ETKDGv3 68
YAV H11 6.934 -1.246 -1.802 ETKDGv3 69
YAV H12 11.632 4.804 4.155 ETKDGv3 70
YAV H13 9.568 3.784 3.003 ETKDGv3 71
YAV H14 9.180 -5.651 -2.419 ETKDGv3 72
YAV H15 1.574 -0.351 -3.295 ETKDGv3 73
YAV H16 3.085 0.216 -2.550 ETKDGv3 74
YAV H17 0.585 -2.279 -2.433 ETKDGv3 75
YAV H18 0.863 -2.661 -0.716 ETKDGv3 76
YAV H19 -0.004 -0.396 -0.029 ETKDGv3 77
YAV H20 -0.273 0.004 -1.744 ETKDGv3 78
YAV H21 -1.128 -2.561 0.672 ETKDGv3 79
YAV H22 -2.072 -1.026 0.894 ETKDGv3 80
YAV H23 -3.063 -3.582 -0.528 ETKDGv3 81
YAV H24 -3.470 -3.076 1.142 ETKDGv3 82
YAV H25 -5.004 -0.688 -4.290 ETKDGv3 83
YAV H26 -6.864 0.628 -5.076 ETKDGv3 84
YAV H27 -8.794 1.191 -3.522 ETKDGv3 85
YAV H28 -12.061 1.464 -1.925 ETKDGv3 86
YAV H29 -13.652 2.011 -1.321 ETKDGv3 87
YAV H30 -14.797 2.753 0.804 ETKDGv3 88
YAV H31 -16.106 3.495 4.254 ETKDGv3 89
YAV H32 -16.835 2.083 3.387 ETKDGv3 90
YAV H33 -16.431 3.597 2.488 ETKDGv3 91
YAV H34 -14.380 1.819 5.045 ETKDGv3 92
YAV H35 -12.054 0.833 4.549 ETKDGv3 93
YAV H36 -6.854 -1.037 -0.381 ETKDGv3 94
YAV H37 4.708 -1.645 -1.865 ETKDGv3 95
YAV H38 -4.711 -1.174 0.317 ETKDGv3 96
YAV H39 13.708 -2.212 3.528 ETKDGv3 97
YAV H40 -10.223 3.114 -2.111 ETKDGv3 98
#