data_YN9
#
_chem_comp.id YN9
_chem_comp.name "3-{4-[(4-fluoro-4'-methyl[1,1'-biphenyl]-2-yl)methoxy]phenyl}propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H21 F O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-13
_chem_comp.pdbx_modified_date 2023-03-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 364.409
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YN9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8G59
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YN9 C6 C1 C 0 1 N N N N N N 100.681 127.013 121.717 5.190 0.092 -0.720 C6 YN9 1
YN9 C5 C2 C 0 1 Y N N N N N 99.649 126.233 120.858 3.745 0.492 -0.575 C5 YN9 2
YN9 C4 C3 C 0 1 N N N N N N 97.366 122.867 117.671 -1.176 0.535 -0.123 C4 YN9 3
YN9 C3 C4 C 0 1 Y N N N N N 97.276 121.375 114.724 -3.492 -1.189 0.047 C3 YN9 4
YN9 O3 O1 O 0 1 N N N N N N 102.490 130.273 121.595 7.740 -0.617 -0.578 O3 YN9 5
YN9 C2 C5 C 0 1 Y N N N N N 96.146 122.042 117.105 -2.556 1.122 0.021 C2 YN9 6
YN9 O2 O2 O 0 1 N N N N N N 102.112 128.847 123.242 8.007 -0.702 1.614 O2 YN9 7
YN9 C1 C6 C 0 1 Y N N N N N 96.102 121.379 115.783 -3.666 0.284 0.103 C1 YN9 8
YN9 O1 O3 O 0 1 N N N N N N 96.900 123.974 118.470 -0.213 1.589 -0.179 O1 YN9 9
YN9 C10 C7 C 0 1 Y N N N N N 97.551 120.229 113.971 -4.090 -2.000 1.010 C10 YN9 10
YN9 C11 C8 C 0 1 Y N N N N N 98.131 122.513 114.453 -2.735 -1.765 -0.970 C11 YN9 11
YN9 C12 C9 C 0 1 N N N N N N 101.170 128.289 121.046 5.811 -0.088 0.667 C12 YN9 12
YN9 C13 C10 C 0 1 Y N N N N N 99.987 124.986 120.323 3.403 1.830 -0.503 C13 YN9 13
YN9 C14 C11 C 0 1 Y N N N N N 98.334 126.729 120.577 2.761 -0.478 -0.520 C14 YN9 14
YN9 C15 C12 C 0 1 Y N N N N N 99.056 124.233 119.521 2.079 2.200 -0.370 C15 YN9 15
YN9 C16 C13 C 0 1 Y N N N N N 97.418 126.013 119.798 1.436 -0.114 -0.388 C16 YN9 16
YN9 C17 C14 C 0 1 Y N N N N N 99.435 121.290 112.752 -3.168 -3.936 -0.057 C17 YN9 17
YN9 C18 C15 C 0 1 Y N N N N N 93.766 120.651 116.387 -5.097 2.203 0.288 C18 YN9 18
YN9 C19 C16 C 0 1 Y N N N N N 93.914 121.303 117.583 -3.990 3.032 0.212 C19 YN9 19
YN9 C20 C17 C 0 1 Y N N N N N 98.624 120.180 112.991 -3.925 -3.369 0.953 C20 YN9 20
YN9 C21 C18 C 0 1 Y N N N N N 99.169 122.474 113.510 -2.577 -3.135 -1.018 C21 YN9 21
YN9 C22 C19 C 0 1 N N N N N N 100.553 121.213 111.713 -2.992 -5.431 -0.114 C22 YN9 22
YN9 C23 C20 C 0 1 N N N N N N 101.985 129.200 122.032 7.257 -0.488 0.521 C23 YN9 23
YN9 C7 C21 C 0 1 Y N N N N N 94.903 120.706 115.483 -4.940 0.832 0.237 C7 YN9 24
YN9 C8 C22 C 0 1 Y N N N N N 95.063 121.998 117.969 -2.722 2.491 0.078 C8 YN9 25
YN9 C9 C23 C 0 1 Y N N N N N 97.784 124.741 119.261 1.091 1.228 -0.309 C9 YN9 26
YN9 F1 F1 F 0 1 N N N N N N 92.826 121.273 118.486 -4.148 4.373 0.268 F1 YN9 27
YN9 H1 H1 H 0 1 N N N N N N 100.210 127.279 122.675 5.253 -0.847 -1.271 H1 YN9 28
YN9 H2 H2 H 0 1 N N N N N N 101.547 126.361 121.903 5.730 0.868 -1.262 H2 YN9 29
YN9 H3 H3 H 0 1 N N N N N N 97.990 122.209 118.293 -0.962 -0.107 0.732 H3 YN9 30
YN9 H4 H4 H 0 1 N N N N N N 97.963 123.253 116.831 -1.125 -0.052 -1.040 H4 YN9 31
YN9 H5 H5 H 0 1 N N N N N N 102.620 129.498 123.711 8.929 -0.957 1.470 H5 YN9 32
YN9 H6 H6 H 0 1 N N N N N N 96.944 119.348 114.123 -4.681 -1.559 1.799 H6 YN9 33
YN9 H7 H7 H 0 1 N N N N N N 97.962 123.429 115.000 -2.274 -1.141 -1.721 H7 YN9 34
YN9 H8 H8 H 0 1 N N N N N N 101.816 128.019 120.197 5.748 0.851 1.217 H8 YN9 35
YN9 H9 H9 H 0 1 N N N N N N 100.300 128.853 120.679 5.272 -0.864 1.209 H9 YN9 36
YN9 H10 H10 H 0 1 N N N N N N 100.968 124.578 120.515 4.173 2.587 -0.550 H10 YN9 37
YN9 H11 H11 H 0 1 N N N N N N 98.040 127.687 120.980 3.030 -1.523 -0.581 H11 YN9 38
YN9 H12 H12 H 0 1 N N N N N N 99.345 123.272 119.120 1.813 3.245 -0.313 H12 YN9 39
YN9 H13 H13 H 0 1 N N N N N N 96.437 126.421 119.603 0.668 -0.872 -0.345 H13 YN9 40
YN9 H14 H14 H 0 1 N N N N N N 92.857 120.127 116.131 -6.084 2.628 0.392 H14 YN9 41
YN9 H15 H15 H 0 1 N N N N N N 98.796 119.268 112.438 -4.384 -3.999 1.700 H15 YN9 42
YN9 H16 H16 H 0 1 N N N N N N 99.778 123.352 113.354 -1.988 -3.583 -1.804 H16 YN9 43
YN9 H17 H17 H 0 1 N N N N N N 100.163 121.517 110.730 -3.789 -5.869 -0.714 H17 YN9 44
YN9 H18 H18 H 0 1 N N N N N N 101.373 121.886 112.006 -2.027 -5.667 -0.564 H18 YN9 45
YN9 H19 H19 H 0 1 N N N N N N 100.929 120.181 111.655 -3.030 -5.840 0.896 H19 YN9 46
YN9 H20 H20 H 0 1 N N N N N N 94.823 120.204 114.530 -5.803 0.186 0.301 H20 YN9 47
YN9 H21 H21 H 0 1 N N N N N N 95.107 122.494 118.927 -1.861 3.141 0.019 H21 YN9 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YN9 C22 C17 SING N N 1
YN9 C17 C20 DOUB Y N 2
YN9 C17 C21 SING Y N 3
YN9 C20 C10 SING Y N 4
YN9 C21 C11 DOUB Y N 5
YN9 C10 C3 DOUB Y N 6
YN9 C11 C3 SING Y N 7
YN9 C3 C1 SING N N 8
YN9 C7 C1 DOUB Y N 9
YN9 C7 C18 SING Y N 10
YN9 C1 C2 SING Y N 11
YN9 C18 C19 DOUB Y N 12
YN9 C2 C4 SING N N 13
YN9 C2 C8 DOUB Y N 14
YN9 C19 C8 SING Y N 15
YN9 C19 F1 SING N N 16
YN9 C4 O1 SING N N 17
YN9 O1 C9 SING N N 18
YN9 C9 C15 DOUB Y N 19
YN9 C9 C16 SING Y N 20
YN9 C15 C13 SING Y N 21
YN9 C16 C14 DOUB Y N 22
YN9 C13 C5 DOUB Y N 23
YN9 C14 C5 SING Y N 24
YN9 C5 C6 SING N N 25
YN9 C12 C6 SING N N 26
YN9 C12 C23 SING N N 27
YN9 O3 C23 DOUB N N 28
YN9 C23 O2 SING N N 29
YN9 C6 H1 SING N N 30
YN9 C6 H2 SING N N 31
YN9 C4 H3 SING N N 32
YN9 C4 H4 SING N N 33
YN9 O2 H5 SING N N 34
YN9 C10 H6 SING N N 35
YN9 C11 H7 SING N N 36
YN9 C12 H8 SING N N 37
YN9 C12 H9 SING N N 38
YN9 C13 H10 SING N N 39
YN9 C14 H11 SING N N 40
YN9 C15 H12 SING N N 41
YN9 C16 H13 SING N N 42
YN9 C18 H14 SING N N 43
YN9 C20 H15 SING N N 44
YN9 C21 H16 SING N N 45
YN9 C22 H17 SING N N 46
YN9 C22 H18 SING N N 47
YN9 C22 H19 SING N N 48
YN9 C7 H20 SING N N 49
YN9 C8 H21 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YN9 SMILES ACDLabs 12.01 Cc1ccc(cc1)c1ccc(F)cc1COc1ccc(cc1)CCC(=O)O
YN9 InChI InChI 1.06 InChI=1S/C23H21FO3/c1-16-2-7-18(8-3-16)22-12-9-20(24)14-19(22)15-27-21-10-4-17(5-11-21)6-13-23(25)26/h2-5,7-12,14H,6,13,15H2,1H3,(H,25,26)
YN9 InChIKey InChI 1.06 LPGBXHWIQNZEJB-UHFFFAOYSA-N
YN9 SMILES_CANONICAL CACTVS 3.385 Cc1ccc(cc1)c2ccc(F)cc2COc3ccc(CCC(O)=O)cc3
YN9 SMILES CACTVS 3.385 Cc1ccc(cc1)c2ccc(F)cc2COc3ccc(CCC(O)=O)cc3
YN9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1)c2ccc(cc2COc3ccc(cc3)CCC(=O)O)F
YN9 SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1)c2ccc(cc2COc3ccc(cc3)CCC(=O)O)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YN9 "SYSTEMATIC NAME" ACDLabs 12.01 "3-{4-[(4-fluoro-4'-methyl[1,1'-biphenyl]-2-yl)methoxy]phenyl}propanoic acid"
YN9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[[5-fluoranyl-2-(4-methylphenyl)phenyl]methoxy]phenyl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YN9 'Create component' 2023-02-13 RCSB
YN9 'Initial release' 2023-03-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YN9 C6 C 7.702 1.500 1
YN9 C5 C 9.002 0.750 2
YN9 C4 C 14.198 -0.750 3
YN9 C3 C 16.796 0.750 4
YN9 O3 O 3.805 0.750 5
YN9 C2 C 15.497 -1.500 6
YN9 O2 O 5.104 3.000 7
YN9 C1 C 16.796 -0.750 8
YN9 O1 O 12.899 -1.500 9
YN9 C10 C 15.497 1.500 10
YN9 C11 C 18.095 1.500 11
YN9 C12 C 6.404 0.750 12
YN9 C13 C 10.301 1.500 13
YN9 C14 C 9.002 -0.750 14
YN9 C15 C 11.600 0.750 15
YN9 C16 C 10.301 -1.500 16
YN9 C17 C 16.796 3.750 17
YN9 C18 C 18.095 -3.000 18
YN9 C19 C 16.796 -3.750 19
YN9 C20 C 15.497 3.000 20
YN9 C21 C 18.095 3.000 21
YN9 C22 C 16.796 5.250 22
YN9 C23 C 5.104 1.500 23
YN9 C7 C 18.095 -1.500 24
YN9 C8 C 15.497 -3.000 25
YN9 C9 C 11.600 -0.750 26
YN9 F1 F 16.796 -5.250 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YN9 C22 C17 SINGLE NONE 1
YN9 C17 C20 SINGLE NONE 2
YN9 C17 C21 DOUBLE NONE 3
YN9 C20 C10 DOUBLE NONE 4
YN9 C21 C11 SINGLE NONE 5
YN9 C10 C3 SINGLE NONE 6
YN9 C11 C3 DOUBLE NONE 7
YN9 C3 C1 SINGLE NONE 8
YN9 C7 C1 SINGLE NONE 9
YN9 C7 C18 DOUBLE NONE 10
YN9 C1 C2 DOUBLE NONE 11
YN9 C18 C19 SINGLE NONE 12
YN9 C2 C4 SINGLE NONE 13
YN9 C2 C8 SINGLE NONE 14
YN9 C19 C8 DOUBLE NONE 15
YN9 C19 F1 SINGLE NONE 16
YN9 C4 O1 SINGLE NONE 17
YN9 O1 C9 SINGLE NONE 18
YN9 C9 C15 DOUBLE NONE 19
YN9 C9 C16 SINGLE NONE 20
YN9 C15 C13 SINGLE NONE 21
YN9 C16 C14 DOUBLE NONE 22
YN9 C13 C5 DOUBLE NONE 23
YN9 C14 C5 SINGLE NONE 24
YN9 C5 C6 SINGLE NONE 25
YN9 C12 C6 SINGLE NONE 26
YN9 C12 C23 SINGLE NONE 27
YN9 O3 C23 DOUBLE NONE 28
YN9 C23 O2 SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YN9 MurckoScaffold S1 scaffold c1ccc(OCc2ccccc2-c2ccccc2)cc1 InChI=1S/C19H16O/c1-3-9-16(10-4-1)19-14-8-7-11-17(19)15-20-18-12-5-2-6-13-18/h1-14H,15H2 JZPJTIGPVNSVOM-UHFFFAOYSA-N
YN9 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YN9 C5 S1 1
YN9 C4 S1 1
YN9 C3 S1 1
YN9 C2 S1 1
YN9 C1 S1 1
YN9 O1 S1 1
YN9 C10 S1 1
YN9 C11 S1 1
YN9 C13 S1 1
YN9 C14 S1 1
YN9 C15 S1 1
YN9 C16 S1 1
YN9 C17 S1 1
YN9 C18 S1 1
YN9 C19 S1 1
YN9 C20 S1 1
YN9 C21 S1 1
YN9 C7 S1 1
YN9 C8 S1 1
YN9 C9 S1 1
YN9 C5 F1 1
YN9 C13 F1 1
YN9 C15 F1 1
YN9 C9 F1 1
YN9 C16 F1 1
YN9 C14 F1 1
YN9 C3 F1 2
YN9 C10 F1 2
YN9 C20 F1 2
YN9 C17 F1 2
YN9 C21 F1 2
YN9 C11 F1 2
YN9 C2 F1 3
YN9 C1 F1 3
YN9 C7 F1 3
YN9 C18 F1 3
YN9 C19 F1 3
YN9 C8 F1 3
#
_pdbe_chem_comp_rdkit_properties.comp_id YN9
_pdbe_chem_comp_rdkit_properties.exactmw 364.147
_pdbe_chem_comp_rdkit_properties.amw 364.416
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.174
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 187.196
_pdbe_chem_comp_rdkit_properties.tpsa 46.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.391
_pdbe_chem_comp_rdkit_properties.CrippenMR 100.574
_pdbe_chem_comp_rdkit_properties.chi0v 13.103
_pdbe_chem_comp_rdkit_properties.chi1v 7.005
_pdbe_chem_comp_rdkit_properties.chi2v 2.804
_pdbe_chem_comp_rdkit_properties.chi3v 2.804
_pdbe_chem_comp_rdkit_properties.chi4v 1.715
_pdbe_chem_comp_rdkit_properties.chi0n 34.103
_pdbe_chem_comp_rdkit_properties.chi1n 17.414
_pdbe_chem_comp_rdkit_properties.chi2n 2.804
_pdbe_chem_comp_rdkit_properties.chi3n 2.804
_pdbe_chem_comp_rdkit_properties.chi4n 1.715
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.140
_pdbe_chem_comp_rdkit_properties.kappa1 5.678
_pdbe_chem_comp_rdkit_properties.kappa2 8.495
_pdbe_chem_comp_rdkit_properties.kappa3 5.171
_pdbe_chem_comp_rdkit_properties.Phi 1.787
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
YN9 UniChem ChEMBL CHEMBL2058533
YN9 UniChem PDBe YN9
YN9 UniChem 'Guide to Pharmacology' 6490
YN9 UniChem ZINC ZINC000081213892
YN9 UniChem HMDB HMDB0259323
YN9 UniChem MedChemExpress HY-100881
YN9 UniChem 'Probes And Drugs' PD016454
YN9 UniChem ChemicalBook CB22701695
YN9 UniChem SureChEMBL SCHEMBL15264542
YN9 UniChem 'PubChem TPHARMA' 137279604
YN9 UniChem PubChem 57522038
YN9 UniChem Nikkaji J3.401.341A
YN9 UniChem BindingDb 50420167
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YN9 C6 4.476 1.384 0.252 ETKDGv3 1
YN9 C5 3.277 0.475 0.244 ETKDGv3 2
YN9 C4 -0.742 -2.571 -0.991 ETKDGv3 3
YN9 C3 -2.789 -0.648 -0.075 ETKDGv3 4
YN9 O3 6.055 3.724 -1.288 ETKDGv3 5
YN9 C2 -2.177 -2.965 -0.739 ETKDGv3 6
YN9 O2 5.595 4.415 0.854 ETKDGv3 7
YN9 C1 -3.111 -2.070 -0.321 ETKDGv3 8
YN9 O1 -0.216 -1.918 0.161 ETKDGv3 9
YN9 C10 -2.794 -0.129 1.313 ETKDGv3 10
YN9 C11 -2.458 0.172 -1.087 ETKDGv3 11
YN9 C12 4.105 2.767 -0.289 ETKDGv3 12
YN9 C13 2.440 0.433 1.295 ETKDGv3 13
YN9 C14 2.971 -0.334 -0.961 ETKDGv3 14
YN9 C15 1.238 -0.423 1.256 ETKDGv3 15
YN9 C16 1.879 -1.106 -0.998 ETKDGv3 16
YN9 C17 -2.016 2.025 0.450 ETKDGv3 17
YN9 C18 -4.833 -3.810 -0.228 ETKDGv3 18
YN9 C19 -3.830 -4.778 -0.710 ETKDGv3 19
YN9 C20 -2.425 1.133 1.561 ETKDGv3 20
YN9 C21 -2.058 1.568 -0.813 ETKDGv3 21
YN9 C22 -1.621 3.444 0.730 ETKDGv3 22
YN9 C23 5.298 3.669 -0.282 ETKDGv3 23
YN9 C7 -4.493 -2.531 -0.041 ETKDGv3 24
YN9 C8 -2.576 -4.381 -0.952 ETKDGv3 25
YN9 C9 0.955 -1.151 0.167 ETKDGv3 26
YN9 F1 -4.183 -6.073 -0.905 ETKDGv3 27
YN9 H1 5.281 0.940 -0.376 ETKDGv3 28
YN9 H2 4.877 1.478 1.286 ETKDGv3 29
YN9 H3 -0.712 -1.891 -1.869 ETKDGv3 30
YN9 H4 -0.117 -3.460 -1.220 ETKDGv3 31
YN9 H5 6.408 5.019 0.880 ETKDGv3 32
YN9 H6 -3.080 -0.776 2.132 ETKDGv3 33
YN9 H7 -2.462 -0.183 -2.110 ETKDGv3 34
YN9 H8 3.307 3.216 0.341 ETKDGv3 35
YN9 H9 3.717 2.675 -1.328 ETKDGv3 36
YN9 H10 2.629 1.034 2.176 ETKDGv3 37
YN9 H11 3.634 -0.302 -1.817 ETKDGv3 38
YN9 H12 0.571 -0.440 2.109 ETKDGv3 39
YN9 H13 1.681 -1.696 -1.883 ETKDGv3 40
YN9 H14 -5.844 -4.138 -0.026 ETKDGv3 41
YN9 H15 -2.423 1.499 2.581 ETKDGv3 42
YN9 H16 -1.789 2.210 -1.643 ETKDGv3 43
YN9 H17 -1.317 3.564 1.791 ETKDGv3 44
YN9 H18 -2.480 4.116 0.524 ETKDGv3 45
YN9 H19 -0.763 3.742 0.090 ETKDGv3 46
YN9 H20 -5.237 -1.827 0.313 ETKDGv3 47
YN9 H21 -1.849 -5.102 -1.303 ETKDGv3 48
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