data_YOD
#
_chem_comp.id YOD
_chem_comp.name (1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H36 N2 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-03-17
_chem_comp.pdbx_modified_date 2021-11-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 412.631
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code YOD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LYD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YOD C21 C1 C 0 1 N N N N N N -42.934 18.173 -7.637 3.689 0.515 0.183 C21 YOD 1
YOD C22 C2 C 0 1 N N N N N N -43.430 19.129 -6.537 4.618 0.059 1.311 C22 YOD 2
YOD C23 C3 C 0 1 N N N N N N -42.936 20.568 -6.778 6.065 0.397 0.947 C23 YOD 3
YOD C24 C4 C 0 1 N N N N N N -41.405 20.606 -6.898 6.446 -0.322 -0.350 C24 YOD 4
YOD C26 C5 C 0 1 N N N N N N -40.981 19.725 -8.086 5.517 0.134 -1.477 C26 YOD 5
YOD C27 C6 C 0 1 N N N N N N -41.413 18.266 -7.837 4.070 -0.203 -1.113 C27 YOD 6
YOD C11 C7 C 0 1 Y N N N N N -46.767 12.159 -9.513 -2.185 -2.637 -0.084 C11 YOD 7
YOD C13 C8 C 0 1 Y N N N N N -47.138 11.727 -11.884 -3.474 -4.209 -1.349 C13 YOD 8
YOD C14 C9 C 0 1 Y N N N N N -48.383 11.188 -11.611 -2.741 -5.247 -0.804 C14 YOD 9
YOD C29 C10 C 0 1 N N N N N N -45.311 14.682 -6.251 -1.081 1.514 -0.389 C29 YOD 10
YOD C15 C11 C 0 1 Y N N N N N -48.816 11.130 -10.291 -1.728 -4.980 0.096 C15 YOD 11
YOD C10 C12 C 0 1 N N N N N N -44.635 11.807 -8.174 -2.083 -1.054 1.822 C10 YOD 12
YOD C12 C13 C 0 1 Y N N N N N -46.344 12.205 -10.841 -3.196 -2.904 -0.989 C12 YOD 13
YOD C01 C14 C 0 1 N N N N N N -46.152 11.313 -2.622 -4.317 4.790 -1.254 C01 YOD 14
YOD C03 C15 C 0 1 N N N N N N -46.494 13.360 -4.545 -3.475 2.123 -0.766 C03 YOD 15
YOD C04 C16 C 0 1 N N S N N N -45.747 13.245 -5.882 -2.528 1.177 -0.025 C04 YOD 16
YOD C05 C17 C 0 1 N N N N N N -44.467 12.397 -5.740 -2.725 1.337 1.484 C05 YOD 17
YOD C06 C18 C 0 1 N N S N N N -43.717 12.387 -7.085 -1.779 0.391 2.225 C06 YOD 18
YOD C07 C19 C 0 1 N N N N N N -43.289 13.815 -7.486 -0.332 0.728 1.861 C07 YOD 19
YOD C08 C20 C 0 1 N N N N N N -46.648 12.662 -6.998 -2.832 -0.268 -0.428 C08 YOD 20
YOD C09 C21 C 0 1 N N S N N N -45.895 12.677 -8.358 -1.886 -1.214 0.313 C09 YOD 21
YOD C16 C22 C 0 1 Y N N N N N -48.028 11.614 -9.263 -1.453 -3.675 0.461 C16 YOD 22
YOD C17 C23 C 0 1 N N N N N N -45.472 14.123 -8.685 -0.439 -0.877 -0.051 C17 YOD 23
YOD C18 C24 C 0 1 N N R N N N -44.544 14.692 -7.591 -0.135 0.568 0.353 C18 YOD 24
YOD C19 C25 C 0 1 N N N N N N -44.279 16.147 -7.961 1.291 0.900 -0.006 C19 YOD 25
YOD N20 N1 N 0 1 N N N N N N -43.270 16.780 -7.328 2.303 0.192 0.532 N20 YOD 26
YOD N25 N2 N 0 1 N N N N N N -40.959 21.991 -7.131 7.836 0.002 -0.699 N25 YOD 27
YOD O28 O1 O 0 1 N N N N N N -44.959 16.706 -8.820 1.527 1.805 -0.778 O28 YOD 28
YOD S02 S1 S 0 1 N N N N N N -47.367 11.766 -3.993 -3.114 3.835 -0.288 S02 YOD 29
YOD H1 H1 H 0 1 N N N N N N -43.421 18.458 -8.581 3.787 1.592 0.045 H1 YOD 30
YOD H2 H2 H 0 1 N N N N N N -44.530 19.125 -6.529 4.347 0.571 2.234 H2 YOD 31
YOD H3 H3 H 0 1 N N N N N N -43.055 18.780 -5.564 4.520 -1.017 1.449 H3 YOD 32
YOD H4 H4 H 0 1 N N N N N N -43.248 21.202 -5.935 6.164 1.473 0.808 H4 YOD 33
YOD H5 H5 H 0 1 N N N N N N -43.380 20.951 -7.709 6.727 0.072 1.750 H5 YOD 34
YOD H6 H6 H 0 1 N N N N N N -40.957 20.212 -5.974 6.348 -1.398 -0.211 H6 YOD 35
YOD H7 H7 H 0 1 N N N N N N -39.888 19.767 -8.200 5.615 1.211 -1.616 H7 YOD 36
YOD H8 H8 H 0 1 N N N N N N -41.460 20.096 -9.004 5.788 -0.378 -2.400 H8 YOD 37
YOD H9 H9 H 0 1 N N N N N N -41.125 17.652 -8.703 3.972 -1.280 -0.974 H9 YOD 38
YOD H10 H10 H 0 1 N N N N N N -40.907 17.889 -6.936 3.408 0.121 -1.916 H10 YOD 39
YOD H11 H11 H 0 1 N N N N N N -46.782 11.778 -12.902 -4.266 -4.418 -2.053 H11 YOD 40
YOD H12 H12 H 0 1 N N N N N N -49.008 10.818 -12.410 -2.959 -6.267 -1.086 H12 YOD 41
YOD H13 H13 H 0 1 N N N N N N -44.658 15.076 -5.458 -0.941 1.400 -1.464 H13 YOD 42
YOD H14 H14 H 0 1 N N N N N N -46.204 15.318 -6.341 -0.865 2.543 -0.101 H14 YOD 43
YOD H15 H15 H 0 1 N N N N N N -49.781 10.701 -10.066 -1.155 -5.791 0.522 H15 YOD 44
YOD H16 H16 H 0 1 N N N N N N -44.939 10.791 -7.884 -1.409 -1.728 2.350 H16 YOD 45
YOD H17 H17 H 0 1 N N N N N N -44.084 11.767 -9.125 -3.114 -1.294 2.081 H17 YOD 46
YOD H18 H18 H 0 1 N N N N N N -45.374 12.622 -11.069 -3.768 -2.092 -1.414 H18 YOD 47
YOD H19 H19 H 0 1 N N N N N N -46.474 10.378 -2.140 -4.155 4.609 -2.316 H19 YOD 48
YOD H20 H20 H 0 1 N N N N N N -45.148 11.177 -3.052 -5.327 4.483 -0.982 H20 YOD 49
YOD H21 H21 H 0 1 N N N N N N -46.125 12.120 -1.875 -4.191 5.852 -1.043 H21 YOD 50
YOD H22 H22 H 0 1 N N N N N N -45.767 13.641 -3.768 -3.334 2.009 -1.841 H22 YOD 51
YOD H23 H23 H 0 1 N N N N N N -47.252 14.151 -4.642 -4.506 1.883 -0.507 H23 YOD 52
YOD H24 H24 H 0 1 N N N N N N -44.736 11.368 -5.461 -2.509 2.366 1.771 H24 YOD 53
YOD H25 H25 H 0 1 N N N N N N -43.822 12.831 -4.962 -3.757 1.097 1.743 H25 YOD 54
YOD H26 H26 H 0 1 N N N N N N -42.821 11.755 -6.994 -1.920 0.505 3.300 H26 YOD 55
YOD H27 H27 H 0 1 N N N N N N -42.774 13.788 -8.457 -0.115 1.757 2.149 H27 YOD 56
YOD H28 H28 H 0 1 N N N N N N -42.612 14.227 -6.723 0.342 0.054 2.390 H28 YOD 57
YOD H29 H29 H 0 1 N N N N N N -47.562 13.269 -7.082 -3.863 -0.508 -0.169 H29 YOD 58
YOD H30 H30 H 0 1 N N N N N N -46.918 11.626 -6.743 -2.692 -0.382 -1.503 H30 YOD 59
YOD H31 H31 H 0 1 N N N N N N -48.395 11.570 -8.248 -0.666 -3.467 1.171 H31 YOD 60
YOD H32 H32 H 0 1 N N N N N N -44.940 14.133 -9.648 0.235 -1.551 0.478 H32 YOD 61
YOD H33 H33 H 0 1 N N N N N N -46.371 14.753 -8.757 -0.298 -0.991 -1.125 H33 YOD 62
YOD H34 H34 H 0 1 N N N N N N -42.741 16.290 -6.635 2.115 -0.532 1.150 H34 YOD 63
YOD H35 H35 H 0 1 N N N N N N -41.234 22.565 -6.359 8.111 -0.460 -1.552 H35 YOD 64
YOD H36 H36 H 0 1 N N N N N N -39.963 22.010 -7.222 7.967 1.000 -0.770 H36 YOD 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YOD C13 C14 DOUB Y N 1
YOD C13 C12 SING Y N 2
YOD C14 C15 SING Y N 3
YOD C12 C11 DOUB Y N 4
YOD C15 C16 DOUB Y N 5
YOD C11 C16 SING Y N 6
YOD C11 C09 SING N N 7
YOD O28 C19 DOUB N N 8
YOD C17 C09 SING N N 9
YOD C17 C18 SING N N 10
YOD C09 C10 SING N N 11
YOD C09 C08 SING N N 12
YOD C10 C06 SING N N 13
YOD C26 C27 SING N N 14
YOD C26 C24 SING N N 15
YOD C19 C18 SING N N 16
YOD C19 N20 SING N N 17
YOD C27 C21 SING N N 18
YOD C21 N20 SING N N 19
YOD C21 C22 SING N N 20
YOD C18 C07 SING N N 21
YOD C18 C29 SING N N 22
YOD C07 C06 SING N N 23
YOD N25 C24 SING N N 24
YOD C06 C05 SING N N 25
YOD C08 C04 SING N N 26
YOD C24 C23 SING N N 27
YOD C23 C22 SING N N 28
YOD C29 C04 SING N N 29
YOD C04 C05 SING N N 30
YOD C04 C03 SING N N 31
YOD C03 S02 SING N N 32
YOD S02 C01 SING N N 33
YOD C21 H1 SING N N 34
YOD C22 H2 SING N N 35
YOD C22 H3 SING N N 36
YOD C23 H4 SING N N 37
YOD C23 H5 SING N N 38
YOD C24 H6 SING N N 39
YOD C26 H7 SING N N 40
YOD C26 H8 SING N N 41
YOD C27 H9 SING N N 42
YOD C27 H10 SING N N 43
YOD C13 H11 SING N N 44
YOD C14 H12 SING N N 45
YOD C29 H13 SING N N 46
YOD C29 H14 SING N N 47
YOD C15 H15 SING N N 48
YOD C10 H16 SING N N 49
YOD C10 H17 SING N N 50
YOD C12 H18 SING N N 51
YOD C01 H19 SING N N 52
YOD C01 H20 SING N N 53
YOD C01 H21 SING N N 54
YOD C03 H22 SING N N 55
YOD C03 H23 SING N N 56
YOD C05 H24 SING N N 57
YOD C05 H25 SING N N 58
YOD C06 H26 SING N N 59
YOD C07 H27 SING N N 60
YOD C07 H28 SING N N 61
YOD C08 H29 SING N N 62
YOD C08 H30 SING N N 63
YOD C16 H31 SING N N 64
YOD C17 H32 SING N N 65
YOD C17 H33 SING N N 66
YOD N20 H34 SING N N 67
YOD N25 H35 SING N N 68
YOD N25 H36 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YOD SMILES ACDLabs 12.01 O=C(NC1CCC(N)CC1)C12CC3CC(CC(CSC)(C3)C1)(C2)c1ccccc1
YOD InChI InChI 1.03 InChI=1S/C25H36N2OS/c1-29-17-23-11-18-12-24(14-23,19-5-3-2-4-6-19)16-25(13-18,15-23)22(28)27-21-9-7-20(26)8-10-21/h2-6,18,20-21H,7-17,26H2,1H3,(H,27,28)/t18-,20-,21-,23-,24+,25-/m0/s1
YOD InChIKey InChI 1.03 DETLZYCOWYAPEH-ONOIFOFISA-N
YOD SMILES_CANONICAL CACTVS 3.385 CSC[C@]12C[C@@H]3C[C@](C1)(C[C@@](C3)(C2)c4ccccc4)C(=O)N[C@H]5CC[C@H](N)CC5
YOD SMILES CACTVS 3.385 CSC[C]12C[CH]3C[C](C1)(C[C](C3)(C2)c4ccccc4)C(=O)N[CH]5CC[CH](N)CC5
YOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CSC[C@@]12C[C@H]3C[C@@](C1)(C[C@](C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5
YOD SMILES "OpenEye OEToolkits" 2.0.7 CSCC12CC3CC(C1)(CC(C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YOD "SYSTEMATIC NAME" ACDLabs 12.01 (1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide
YOD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (1~{R},3~{S},5~{S},7~{S})-~{N}-(4-azanylcyclohexyl)-3-(methylsulfanylmethyl)-5-phenyl-adamantane-1-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YOD 'Create component' 2021-03-17 RCSB
YOD 'Initial release' 2021-11-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
YOD C21 C -3.359 -2.197 1
YOD C22 C -3.392 -3.697 2
YOD C23 C -4.705 -4.423 3
YOD C24 C -5.987 -3.646 4
YOD C26 C -5.959 -2.147 5
YOD C27 C -4.643 -1.424 6
YOD C11 C 3.011 -0.610 7
YOD C13 C 3.777 -3.093 8
YOD C14 C 5.210 -2.649 9
YOD C29 C 0.029 2.193 10
YOD C15 C 5.544 -1.188 11
YOD C10 C 1.671 1.746 12
YOD C12 C 2.678 -2.071 13
YOD C01 C 4.136 5.505 14
YOD C03 C 2.733 3.156 15
YOD C04 C 1.345 2.863 16
YOD C05 C 1.087 4.240 17
YOD C06 C 0.475 2.877 18
YOD C07 C -0.856 2.172 19
YOD C08 C 2.519 1.749 20
YOD C09 C 1.904 0.400 21
YOD C16 C 4.444 -0.167 22
YOD C17 C 0.570 -0.292 23
YOD C18 C -0.595 0.833 24
YOD C19 C -1.957 0.086 25
YOD N20 N -2.009 -1.451 26
YOD N25 N -7.303 -4.370 27
YOD O28 O -3.237 0.868 28
YOD S02 S 2.867 4.738 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
YOD C13 C14 DOUBLE NONE 1
YOD C13 C12 SINGLE NONE 2
YOD C14 C15 SINGLE NONE 3
YOD C12 C11 DOUBLE NONE 4
YOD C15 C16 DOUBLE NONE 5
YOD C11 C16 SINGLE NONE 6
YOD C09 C11 SINGLE BEGINDASH 7
YOD O28 C19 DOUBLE NONE 8
YOD C17 C09 SINGLE NONE 9
YOD C17 C18 SINGLE NONE 10
YOD C09 C10 SINGLE NONE 11
YOD C09 C08 SINGLE NONE 12
YOD C10 C06 SINGLE NONE 13
YOD C26 C27 SINGLE NONE 14
YOD C26 C24 SINGLE NONE 15
YOD C18 C19 SINGLE BEGINWEDGE 16
YOD C19 N20 SINGLE NONE 17
YOD C27 C21 SINGLE NONE 18
YOD C21 N20 SINGLE BEGINWEDGE 19
YOD C21 C22 SINGLE NONE 20
YOD C18 C07 SINGLE NONE 21
YOD C18 C29 SINGLE NONE 22
YOD C07 C06 SINGLE NONE 23
YOD C24 N25 SINGLE BEGINDASH 24
YOD C06 C05 SINGLE NONE 25
YOD C08 C04 SINGLE NONE 26
YOD C24 C23 SINGLE NONE 27
YOD C23 C22 SINGLE NONE 28
YOD C29 C04 SINGLE NONE 29
YOD C04 C05 SINGLE NONE 30
YOD C04 C03 SINGLE BEGINWEDGE 31
YOD C03 S02 SINGLE NONE 32
YOD S02 C01 SINGLE NONE 33
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
YOD MurckoScaffold S1 scaffold 'O=C(NC1CCCCC1)[C@]12CC3C[C@H](C1)C[C@@](c1ccccc1)(C3)C2' InChI=1S/C23H31NO/c25-21(24-20-9-5-2-6-10-20)23-14-17-11-18(15-23)13-22(12-17,16-23)19-7-3-1-4-8-19/h1,3-4,7-8,17-18,20H,2,5-6,9-16H2,(H,24,25)/t17-,18?,22+,23-/m0/s1 ZUXLYLNEYGXHBS-KAMBVDCMSA-N
YOD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
YOD cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
YOD phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
YOD Z1787158625 F4 fragment CC(=O)NC1CCC(N)CC1 InChI=1S/C8H16N2O/c1-6(11)10-8-4-2-7(9)3-5-8/h7-8H,2-5,9H2,1H3,(H,10,11) DGCIBJXJCNPBTN-UHFFFAOYSA-N
YOD Z32016974 F5 fragment CNC(=O)CCC1CCCCC1 InChI=1S/C10H19NO/c1-11-10(12)8-7-9-5-3-2-4-6-9/h9H,2-8H2,1H3,(H,11,12) NKQAGLASNCWFIR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
YOD C21 S1 1
YOD C22 S1 1
YOD C23 S1 1
YOD C24 S1 1
YOD C26 S1 1
YOD C27 S1 1
YOD C11 S1 1
YOD C13 S1 1
YOD C14 S1 1
YOD C29 S1 1
YOD C15 S1 1
YOD C10 S1 1
YOD C12 S1 1
YOD C04 S1 1
YOD C05 S1 1
YOD C06 S1 1
YOD C07 S1 1
YOD C08 S1 1
YOD C09 S1 1
YOD C16 S1 1
YOD C17 S1 1
YOD C18 S1 1
YOD C19 S1 1
YOD N20 S1 1
YOD O28 S1 1
YOD N20 F1 1
YOD C19 F1 1
YOD O28 F1 1
YOD C18 F1 1
YOD C21 F2 1
YOD C27 F2 1
YOD C26 F2 1
YOD C24 F2 1
YOD C23 F2 1
YOD C22 F2 1
YOD C29 F2 2
YOD C18 F2 2
YOD C17 F2 2
YOD C09 F2 2
YOD C08 F2 2
YOD C04 F2 2
YOD C29 F2 3
YOD C18 F2 3
YOD C07 F2 3
YOD C06 F2 3
YOD C05 F2 3
YOD C04 F2 3
YOD C10 F2 4
YOD C09 F2 4
YOD C17 F2 4
YOD C18 F2 4
YOD C07 F2 4
YOD C06 F2 4
YOD C10 F2 5
YOD C09 F2 5
YOD C08 F2 5
YOD C04 F2 5
YOD C05 F2 5
YOD C06 F2 5
YOD C11 F3 1
YOD C12 F3 1
YOD C13 F3 1
YOD C14 F3 1
YOD C15 F3 1
YOD C16 F3 1
YOD C18 F4 1
YOD C19 F4 1
YOD O28 F4 1
YOD N20 F4 1
YOD C21 F4 1
YOD C27 F4 1
YOD C26 F4 1
YOD C24 F4 1
YOD N25 F4 1
YOD C23 F4 1
YOD C22 F4 1
YOD C21 F5 1
YOD N20 F5 1
YOD C19 F5 1
YOD O28 F5 1
YOD C18 F5 1
YOD C17 F5 1
YOD C09 F5 1
YOD C10 F5 1
YOD C06 F5 1
YOD C05 F5 1
YOD C04 F5 1
YOD C08 F5 1
YOD C21 F5 2
YOD N20 F5 2
YOD C19 F5 2
YOD O28 F5 2
YOD C18 F5 2
YOD C07 F5 2
YOD C06 F5 2
YOD C10 F5 2
YOD C09 F5 2
YOD C08 F5 2
YOD C04 F5 2
YOD C05 F5 2
YOD C21 F5 3
YOD N20 F5 3
YOD C19 F5 3
YOD O28 F5 3
YOD C18 F5 3
YOD C29 F5 3
YOD C04 F5 3
YOD C08 F5 3
YOD C09 F5 3
YOD C10 F5 3
YOD C06 F5 3
YOD C05 F5 3
#
_pdbe_chem_comp_rdkit_properties.comp_id YOD
_pdbe_chem_comp_rdkit_properties.exactmw 412.255
_pdbe_chem_comp_rdkit_properties.amw 412.643
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.720
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 5
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 230.269
_pdbe_chem_comp_rdkit_properties.tpsa 55.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.589
_pdbe_chem_comp_rdkit_properties.CrippenMR 120.668
_pdbe_chem_comp_rdkit_properties.chi0v 15.027
_pdbe_chem_comp_rdkit_properties.chi1v 8.850
_pdbe_chem_comp_rdkit_properties.chi2v 4.683
_pdbe_chem_comp_rdkit_properties.chi3v 4.683
_pdbe_chem_comp_rdkit_properties.chi4v 3.567
_pdbe_chem_comp_rdkit_properties.chi0n 50.211
_pdbe_chem_comp_rdkit_properties.chi1n 25.875
_pdbe_chem_comp_rdkit_properties.chi2n 4.274
_pdbe_chem_comp_rdkit_properties.chi3n 4.274
_pdbe_chem_comp_rdkit_properties.chi4n 3.260
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1
_pdbe_chem_comp_rdkit_properties.kappa1 4.414
_pdbe_chem_comp_rdkit_properties.kappa2 7.301
_pdbe_chem_comp_rdkit_properties.kappa3 3.444
_pdbe_chem_comp_rdkit_properties.Phi 1.111
#
_pdbe_chem_comp_external_mappings.comp_id YOD
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id YOD
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
YOD C21 3.660 0.381 0.051 ETKDGv3 1
YOD C22 4.529 0.106 1.293 ETKDGv3 2
YOD C23 6.013 0.013 0.919 ETKDGv3 3
YOD C24 6.243 -1.076 -0.150 ETKDGv3 4
YOD C26 5.373 -0.810 -1.390 ETKDGv3 5
YOD C27 3.889 -0.709 -1.013 ETKDGv3 6
YOD C11 -2.542 -2.155 0.677 ETKDGv3 7
YOD C13 -2.254 -4.321 1.824 ETKDGv3 8
YOD C14 -3.194 -4.902 1.076 ETKDGv3 9
YOD C29 -1.114 1.582 -1.173 ETKDGv3 10
YOD C15 -3.893 -4.121 0.042 ETKDGv3 11
YOD C10 -2.392 0.112 1.808 ETKDGv3 12
YOD C12 -1.914 -2.899 1.619 ETKDGv3 13
YOD C01 -5.444 3.925 -1.320 ETKDGv3 14
YOD C03 -3.442 2.177 -1.936 ETKDGv3 15
YOD C04 -2.620 1.510 -0.801 ETKDGv3 16
YOD C05 -2.831 2.249 0.546 ETKDGv3 17
YOD C06 -1.978 1.589 1.644 ETKDGv3 18
YOD C07 -0.485 1.670 1.265 ETKDGv3 19
YOD C08 -3.012 0.017 -0.631 ETKDGv3 20
YOD C09 -2.163 -0.672 0.481 ETKDGv3 21
YOD C16 -3.592 -2.831 -0.151 ETKDGv3 22
YOD C17 -0.663 -0.560 0.077 ETKDGv3 23
YOD C18 -0.234 0.925 -0.072 ETKDGv3 24
YOD C19 1.243 1.001 -0.438 ETKDGv3 25
YOD N20 2.242 0.426 0.422 ETKDGv3 26
YOD N25 7.653 -1.140 -0.538 ETKDGv3 27
YOD O28 1.601 1.577 -1.503 ETKDGv3 28
YOD S02 -5.257 2.142 -1.645 ETKDGv3 29
YOD H1 3.956 1.370 -0.365 ETKDGv3 30
YOD H2 4.212 -0.844 1.778 ETKDGv3 31
YOD H3 4.392 0.929 2.028 ETKDGv3 32
YOD H4 6.600 -0.231 1.830 ETKDGv3 33
YOD H5 6.360 1.000 0.541 ETKDGv3 34
YOD H6 5.953 -2.063 0.277 ETKDGv3 35
YOD H7 5.692 0.135 -1.884 ETKDGv3 36
YOD H8 5.505 -1.639 -2.119 ETKDGv3 37
YOD H9 3.304 -0.473 -1.927 ETKDGv3 38
YOD H10 3.536 -1.692 -0.627 ETKDGv3 39
YOD H11 -1.737 -4.892 2.585 ETKDGv3 40
YOD H12 -3.443 -5.944 1.226 ETKDGv3 41
YOD H13 -0.814 2.646 -1.307 ETKDGv3 42
YOD H14 -0.944 1.066 -2.146 ETKDGv3 43
YOD H15 -4.654 -4.597 -0.563 ETKDGv3 44
YOD H16 -1.801 -0.325 2.641 ETKDGv3 45
YOD H17 -3.463 0.055 2.104 ETKDGv3 46
YOD H18 -1.143 -2.476 2.249 ETKDGv3 47
YOD H19 -4.803 4.233 -0.469 ETKDGv3 48
YOD H20 -5.171 4.506 -2.226 ETKDGv3 49
YOD H21 -6.503 4.137 -1.065 ETKDGv3 50
YOD H22 -3.257 1.633 -2.888 ETKDGv3 51
YOD H23 -3.088 3.218 -2.096 ETKDGv3 52
YOD H24 -2.549 3.320 0.447 ETKDGv3 53
YOD H25 -3.899 2.213 0.852 ETKDGv3 54
YOD H26 -2.141 2.125 2.605 ETKDGv3 55
YOD H27 0.118 1.227 2.087 ETKDGv3 56
YOD H28 -0.181 2.736 1.172 ETKDGv3 57
YOD H29 -2.862 -0.507 -1.602 ETKDGv3 58
YOD H30 -4.088 -0.054 -0.362 ETKDGv3 59
YOD H31 -4.134 -2.305 -0.923 ETKDGv3 60
YOD H32 -0.492 -1.101 -0.881 ETKDGv3 61
YOD H33 -0.027 -1.052 0.842 ETKDGv3 62
YOD H34 1.951 0.035 1.347 ETKDGv3 63
YOD H35 8.219 -1.399 0.303 ETKDGv3 64
YOD H36 7.972 -0.193 -0.849 ETKDGv3 65
#